| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is 74316895
Identifier: 74316895
GI number: 74316895
Start: 926905
End: 927552
Strand: Direct
Name: 74316895
Synonym: Tbd_0877
Alternate gene names: NA
Gene position: 926905-927552 (Clockwise)
Preceding gene: 74316884
Following gene: 74316900
Centisome position: 31.85
GC content: 68.36
Gene sequence:
>648_bases ATGGTCTTCAAGCAGGGAATCCGGGCGTTCATCTTAACCGCCGGCGTGTTTGCGTGCACCGCGGTGTCAGCGACCAGCGT GGCCGTGGTCGGCCTCTTCAGGGACAAGGCCATCGTCAGCATTGACGGCGGCAAGCCGCTCACGCTGAGCCGCGGCCAGA CGGTAAGCGGCGTGACCTTGATCGCCGCCGACTCGGACCGCGTCGCGGTGGATGTCGACGGAGAGCGCCGCAGCCTTGGC ATGGGACAGTCGTTTGCCGGGGGCGCTCAGACGGCCGCGCGCCAGTCGGTTTCGCTGACGGCCGATGCGCGCGGTCACTT CGCGGCGAATGGCGCGCTGAACGGGTACCCGATCACGTTTCTGGTCGACACCGGCGCTACCGCGGTCGCGATCGGTGCGG CGGAAGCCCGCCGGCTCGGGCTCGACTACCGCAGCGGCACGGCCGCGCGCGTCAACACGGCCGCGGGCGCCGTGCCGGCT TGGCGGGTGACGTTCCACACGGTGAAGGTGGGCGGTATCAGCGTCAATCAGGTCGAGGGGCTGGTCGTCGAAAGCGGACT CGACGTACCCCTGCTCGGCATGAGCTTTCTCAACCGGATGGACATGACGCGCGACGGCCAGACGATGACGCTGACGCGTC GCTACTGA
Upstream 100 bases:
>100_bases ACGGACCAGGTGCCAGGGAATGTCGTGGCGGTCGAGAAAGCTCGCGAAGTAGCCGGGCCCCTCGATCGGGGAGTGCTGAA AAATCAGAACAGGATGCATG
Downstream 100 bases:
>100_bases CGACGACCGCTGTAGCGGCCAGGTCGCAGGCGCCTATTTTTTGCGCTTGTCGTGCTCGATCAGCGCGTAGGCGCTGTGGT TATGGATCGACTCGAAGTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 215; Mature: 215
Protein sequence:
>215_residues MVFKQGIRAFILTAGVFACTAVSATSVAVVGLFRDKAIVSIDGGKPLTLSRGQTVSGVTLIAADSDRVAVDVDGERRSLG MGQSFAGGAQTAARQSVSLTADARGHFAANGALNGYPITFLVDTGATAVAIGAAEARRLGLDYRSGTAARVNTAAGAVPA WRVTFHTVKVGGISVNQVEGLVVESGLDVPLLGMSFLNRMDMTRDGQTMTLTRRY
Sequences:
>Translated_215_residues MVFKQGIRAFILTAGVFACTAVSATSVAVVGLFRDKAIVSIDGGKPLTLSRGQTVSGVTLIAADSDRVAVDVDGERRSLG MGQSFAGGAQTAARQSVSLTADARGHFAANGALNGYPITFLVDTGATAVAIGAAEARRLGLDYRSGTAARVNTAAGAVPA WRVTFHTVKVGGISVNQVEGLVVESGLDVPLLGMSFLNRMDMTRDGQTMTLTRRY >Mature_215_residues MVFKQGIRAFILTAGVFACTAVSATSVAVVGLFRDKAIVSIDGGKPLTLSRGQTVSGVTLIAADSDRVAVDVDGERRSLG MGQSFAGGAQTAARQSVSLTADARGHFAANGALNGYPITFLVDTGATAVAIGAAEARRLGLDYRSGTAARVNTAAGAVPA WRVTFHTVKVGGISVNQVEGLVVESGLDVPLLGMSFLNRMDMTRDGQTMTLTRRY
Specific function: Unknown
COG id: COG3577
COG function: function code R; Predicted aspartyl protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22239; Mature: 22239
Theoretical pI: Translated: 10.34; Mature: 10.34
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00141 ASP_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVFKQGIRAFILTAGVFACTAVSATSVAVVGLFRDKAIVSIDGGKPLTLSRGQTVSGVTL CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCCEEEEECCCEECCEEE IAADSDRVAVDVDGERRSLGMGQSFAGGAQTAARQSVSLTADARGHFAANGALNGYPITF EEECCCEEEEEECCCCCCCCCCCCCCCCCHHHHHCEEEEEECCCCCEEECCCCCCCEEEE LVDTGATAVAIGAAEARRLGLDYRSGTAARVNTAAGAVPAWRVTFHTVKVGGISVNQVEG EEECCCEEEEEECHHHHHHCCCCCCCCCEEEECCCCCCCEEEEEEEEEEECCEEHHHCCE LVVESGLDVPLLGMSFLNRMDMTRDGQTMTLTRRY EEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEECC >Mature Secondary Structure MVFKQGIRAFILTAGVFACTAVSATSVAVVGLFRDKAIVSIDGGKPLTLSRGQTVSGVTL CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCCEEEEECCCEECCEEE IAADSDRVAVDVDGERRSLGMGQSFAGGAQTAARQSVSLTADARGHFAANGALNGYPITF EEECCCEEEEEECCCCCCCCCCCCCCCCCHHHHHCEEEEEECCCCCEEECCCCCCCEEEE LVDTGATAVAIGAAEARRLGLDYRSGTAARVNTAAGAVPAWRVTFHTVKVGGISVNQVEG EEECCCEEEEEECHHHHHHCCCCCCCCCEEEECCCCCCCEEEEEEEEEEECCEEHHHCCE LVVESGLDVPLLGMSFLNRMDMTRDGQTMTLTRRY EEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA