| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is norD [H]
Identifier: 74316843
GI number: 74316843
Start: 866976
End: 869000
Strand: Direct
Name: norD [H]
Synonym: Tbd_0825
Alternate gene names: 74316843
Gene position: 866976-869000 (Clockwise)
Preceding gene: 74316842
Following gene: 74316849
Centisome position: 29.79
GC content: 72.54
Gene sequence:
>2025_bases ATGCCCGAGGCGGAAGAACTCATCATCGATGCCGCGCGCCATGCCGGCACCGCGGTGCACGGATTCTGGCGGCGCCGCCA CGCCCCGCCGCCGACGCCGACGGTATTCCTGCGCGACGTGCGCACGCGCCTCGAGATGCTGATCGACGCCGTGCTCGGTT GCGAGCTGCCGGTGCGGGCGGCGCAGGCGGCCGCGCCGATGCCGCTTCTGCGCAGGCTGTTCACGCGCGGTGGACGGAAG ACGGCGGCCGCCGGACCGCTTCCGGCGACCGACGGCACGGCGGTTTTCCTGCCGCCGAGCCTTCCCGTATCGCCGCCGGC GTCGGCGGCGTTCACCGACGACTACTGCCTGCTCGCGCTGCTGCAGGCGCTGCATCACCTGCGCGGAAGCGCAGGCGAAA TCGCGCGCCTGGAGTCGGACCTCGCGCGCGACCTGTACCTGATCGCCGAAGCCGCGGCGGTCGACCACCGGCTGCGCCGG CTCATGCCGGGATGGTCGCAGGCGCTCGACGCGCTTTACGTGCGGATGGACCGCGCGCTTGCGCAGCGCCGCCTGCGGGA CGCGCTCGAGGCCGACGTCGCGGCGCGTTACCGGAATTTCCTGCGTGGCCGCGCGGGCGCGGAAACGCTGCACGCGAATC CGGCCGCGGCGCTCGACTGGGCGAATGCACAGGCGCGCGCCCTGCGTCTGCGCGTGCCTGCCAGGCGCTATGTCGCCTGG CTCGGCGACCTCGTCGTCGGCCGCCTGCTGCCACCCGAAGGCGCGCCGCGGGCGCGTGTGCGCGCATCCTCGAAGGCGGC GGCGGCCGCGGACGCGCGGGCCGGCGCGCGCACGGCCTCGCTCGTGCGGCGTCCGCGCGTGCGCGACGGCCGCGACGAGG ACGATGCGAAACCGGGCGTATCGATGGTCCAGACCTCCGAGCCGCATCCGCACGCCGAGGATCCCTTCGGCCTCAACCGT CCGGAAGACCAGGAGCCGGAAGACGACTTGGGGGGCGCGGCGGAGTCGCTGGCCGAAATGGAAGAGGCGCGGCTGGTCCA CAGCCCCGGCGCTGCGCGCGAAGCCTTCGAGGCAAGCGATCCGCCGCCACGGCTCGAAAGCGCGGCGGACACCGCACTGC CGCCCTGTGCATTCAGCTACCCGGAATGGGATTGCCGCACGAGTCGTTACCGTGAAAACGCTGTTGCACTTTTCTCGCAT CCGGCGAAACCGGGCGGCGCGAAATGGGTCGCCGACGCGTTGCAGCGCAACGCCGGCCTGCTCGCACAGATCCGCCGGCG GCTCGGCGCGATTCGTCCCGACCGCACGATCCTGCGCGGGCAGACCGCGGGGGACGAGATCGACCTCGACGCGGTCGTCG CCGCGCGGGGCGAGCGCCGGGCCGGCGCGACAGGCGACGCGCGCTTCTACCGCTCCCGTCGTCCGGCGCCGCGCACGCTC GCGCTTGTGCTCCTGGTCGACGCGAGCGCGTCGACCGACGCATGGGTGACGCGCAAGGACCGCGTCATCGACATCGAGAA GGAGGCGGCGCTGCTCGCCGCGGCGGGGCTCGAGACCTTGCGAACGCGCTTCGCGGTGCTCGCGTTTTCGGGCGAAGGCC CGGCCGGCGTGCAGATACGCGAGATCAAGCGTTTCGACGAGACCTGGGATGCAAGCGCACAGCGTCGCCTCGCCGGCCTC GAGCCCGACCGCTACACCCGGCTCGGCGCCGCCCTACGCCACGCCAACGCCTTGCTCGCGGCGTGCGCGGCTGACCACCG GCTGTTGCTACTTTTGTCGGACGGGCGGCCCAACGACTGCGACCGCTACGCGAGCCGCTACGGCATCGAAGACGCGCGCC AAGCGCTCACCGAGGCGCGGCTCAAGCGCATTTCGCCCTACTGCTTCACGGTCGACCGCGCCGGCGGCAGTTATCTGCCG ACGATTTTCGGCAGCGAGGGCTACACAGTGGTGCAGCACCCGCAACAGCTGCCGGTCGCGTTCATCAACTGGCTGCGGCG CGCGGCGCGCGTGTGCATGCGCTAG
Upstream 100 bases:
>100_bases GCGCCGCGCCTGCGAGGTCGCGATCGCCGACGCGCTGACCGACGACCCGCTGCTGCTCGGTACCCTCGGCGATCTGATCG CCGGCAGCTTTCCCTGAGCA
Downstream 100 bases:
>100_bases ACGCGCCGCTGGCTCAGCCTTCGTCGTAGCCTTCGTCGACCGGGTTGTCGACCAGATGGAACGGATGGTCGATCGGCATA TCCATGAATTCCTTGCGCGT
Product: nitric oxide reductase activase protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 674; Mature: 673
Protein sequence:
>674_residues MPEAEELIIDAARHAGTAVHGFWRRRHAPPPTPTVFLRDVRTRLEMLIDAVLGCELPVRAAQAAAPMPLLRRLFTRGGRK TAAAGPLPATDGTAVFLPPSLPVSPPASAAFTDDYCLLALLQALHHLRGSAGEIARLESDLARDLYLIAEAAAVDHRLRR LMPGWSQALDALYVRMDRALAQRRLRDALEADVAARYRNFLRGRAGAETLHANPAAALDWANAQARALRLRVPARRYVAW LGDLVVGRLLPPEGAPRARVRASSKAAAAADARAGARTASLVRRPRVRDGRDEDDAKPGVSMVQTSEPHPHAEDPFGLNR PEDQEPEDDLGGAAESLAEMEEARLVHSPGAAREAFEASDPPPRLESAADTALPPCAFSYPEWDCRTSRYRENAVALFSH PAKPGGAKWVADALQRNAGLLAQIRRRLGAIRPDRTILRGQTAGDEIDLDAVVAARGERRAGATGDARFYRSRRPAPRTL ALVLLVDASASTDAWVTRKDRVIDIEKEAALLAAAGLETLRTRFAVLAFSGEGPAGVQIREIKRFDETWDASAQRRLAGL EPDRYTRLGAALRHANALLAACAADHRLLLLLSDGRPNDCDRYASRYGIEDARQALTEARLKRISPYCFTVDRAGGSYLP TIFGSEGYTVVQHPQQLPVAFINWLRRAARVCMR
Sequences:
>Translated_674_residues MPEAEELIIDAARHAGTAVHGFWRRRHAPPPTPTVFLRDVRTRLEMLIDAVLGCELPVRAAQAAAPMPLLRRLFTRGGRK TAAAGPLPATDGTAVFLPPSLPVSPPASAAFTDDYCLLALLQALHHLRGSAGEIARLESDLARDLYLIAEAAAVDHRLRR LMPGWSQALDALYVRMDRALAQRRLRDALEADVAARYRNFLRGRAGAETLHANPAAALDWANAQARALRLRVPARRYVAW LGDLVVGRLLPPEGAPRARVRASSKAAAAADARAGARTASLVRRPRVRDGRDEDDAKPGVSMVQTSEPHPHAEDPFGLNR PEDQEPEDDLGGAAESLAEMEEARLVHSPGAAREAFEASDPPPRLESAADTALPPCAFSYPEWDCRTSRYRENAVALFSH PAKPGGAKWVADALQRNAGLLAQIRRRLGAIRPDRTILRGQTAGDEIDLDAVVAARGERRAGATGDARFYRSRRPAPRTL ALVLLVDASASTDAWVTRKDRVIDIEKEAALLAAAGLETLRTRFAVLAFSGEGPAGVQIREIKRFDETWDASAQRRLAGL EPDRYTRLGAALRHANALLAACAADHRLLLLLSDGRPNDCDRYASRYGIEDARQALTEARLKRISPYCFTVDRAGGSYLP TIFGSEGYTVVQHPQQLPVAFINWLRRAARVCMR >Mature_673_residues PEAEELIIDAARHAGTAVHGFWRRRHAPPPTPTVFLRDVRTRLEMLIDAVLGCELPVRAAQAAAPMPLLRRLFTRGGRKT AAAGPLPATDGTAVFLPPSLPVSPPASAAFTDDYCLLALLQALHHLRGSAGEIARLESDLARDLYLIAEAAAVDHRLRRL MPGWSQALDALYVRMDRALAQRRLRDALEADVAARYRNFLRGRAGAETLHANPAAALDWANAQARALRLRVPARRYVAWL GDLVVGRLLPPEGAPRARVRASSKAAAAADARAGARTASLVRRPRVRDGRDEDDAKPGVSMVQTSEPHPHAEDPFGLNRP EDQEPEDDLGGAAESLAEMEEARLVHSPGAAREAFEASDPPPRLESAADTALPPCAFSYPEWDCRTSRYRENAVALFSHP AKPGGAKWVADALQRNAGLLAQIRRRLGAIRPDRTILRGQTAGDEIDLDAVVAARGERRAGATGDARFYRSRRPAPRTLA LVLLVDASASTDAWVTRKDRVIDIEKEAALLAAAGLETLRTRFAVLAFSGEGPAGVQIREIKRFDETWDASAQRRLAGLE PDRYTRLGAALRHANALLAACAADHRLLLLLSDGRPNDCDRYASRYGIEDARQALTEARLKRISPYCFTVDRAGGSYLPT IFGSEGYTVVQHPQQLPVAFINWLRRAARVCMR
Specific function: Part of the operon norEFCBQD encoding nitric oxide reductase. Essential virulence factor, probably involved in the detoxification of nitric oxide (NO) produced in the macrophages during the innate response against infection [H]
COG id: COG4548
COG function: function code P; Nitric oxide reductase activation protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 VWFA domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002035 [H]
Pfam domain/function: PF00092 VWA [H]
EC number: NA
Molecular weight: Translated: 73587; Mature: 73456
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEAEELIIDAARHAGTAVHGFWRRRHAPPPTPTVFLRDVRTRLEMLIDAVLGCELPVRA CCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH AQAAAPMPLLRRLFTRGGRKTAAAGPLPATDGTAVFLPPSLPVSPPASAAFTDDYCLLAL HHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHH LQALHHLRGSAGEIARLESDLARDLYLIAEAAAVDHRLRRLMPGWSQALDALYVRMDRAL HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH AQRRLRDALEADVAARYRNFLRGRAGAETLHANPAAALDWANAQARALRLRVPARRYVAW HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHCCCCCHHHEEEEECCHHHHHHH LGDLVVGRLLPPEGAPRARVRASSKAAAAADARAGARTASLVRRPRVRDGRDEDDAKPGV HHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCC SMVQTSEPHPHAEDPFGLNRPEDQEPEDDLGGAAESLAEMEEARLVHSPGAAREAFEASD CEEECCCCCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCCHHHHHHCCCC PPPRLESAADTALPPCAFSYPEWDCRTSRYRENAVALFSHPAKPGGAKWVADALQRNAGL CCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCH LAQIRRRLGAIRPDRTILRGQTAGDEIDLDAVVAARGERRAGATGDARFYRSRRPAPRTL HHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCEE ALVLLVDASASTDAWVTRKDRVIDIEKEAALLAAAGLETLRTRFAVLAFSGEGPAGVQIR EEEEEEECCCCCCCEEECCCCEEEEHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHH EIKRFDETWDASAQRRLAGLEPDRYTRLGAALRHANALLAACAADHRLLLLLSDGRPNDC HHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHH DRYASRYGIEDARQALTEARLKRISPYCFTVDRAGGSYLPTIFGSEGYTVVQHPQQLPVA HHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCEEECCCCCCHHH FINWLRRAARVCMR HHHHHHHHHHHHCC >Mature Secondary Structure PEAEELIIDAARHAGTAVHGFWRRRHAPPPTPTVFLRDVRTRLEMLIDAVLGCELPVRA CCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH AQAAAPMPLLRRLFTRGGRKTAAAGPLPATDGTAVFLPPSLPVSPPASAAFTDDYCLLAL HHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHH LQALHHLRGSAGEIARLESDLARDLYLIAEAAAVDHRLRRLMPGWSQALDALYVRMDRAL HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH AQRRLRDALEADVAARYRNFLRGRAGAETLHANPAAALDWANAQARALRLRVPARRYVAW HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHCCCCCHHHEEEEECCHHHHHHH LGDLVVGRLLPPEGAPRARVRASSKAAAAADARAGARTASLVRRPRVRDGRDEDDAKPGV HHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCC SMVQTSEPHPHAEDPFGLNRPEDQEPEDDLGGAAESLAEMEEARLVHSPGAAREAFEASD CEEECCCCCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCCHHHHHHCCCC PPPRLESAADTALPPCAFSYPEWDCRTSRYRENAVALFSHPAKPGGAKWVADALQRNAGL CCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCH LAQIRRRLGAIRPDRTILRGQTAGDEIDLDAVVAARGERRAGATGDARFYRSRRPAPRTL HHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCEE ALVLLVDASASTDAWVTRKDRVIDIEKEAALLAAAGLETLRTRFAVLAFSGEGPAGVQIR EEEEEEECCCCCCCEEECCCCEEEEHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHH EIKRFDETWDASAQRRLAGLEPDRYTRLGAALRHANALLAACAADHRLLLLLSDGRPNDC HHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHH DRYASRYGIEDARQALTEARLKRISPYCFTVDRAGGSYLPTIFGSEGYTVVQHPQQLPVA HHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCEEECCCCCCHHH FINWLRRAARVCMR HHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA