| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is cbbYC [H]
Identifier: 74316708
GI number: 74316708
Start: 730430
End: 731191
Strand: Reverse
Name: cbbYC [H]
Synonym: Tbd_0690
Alternate gene names: 74316708
Gene position: 731191-730430 (Counterclockwise)
Preceding gene: 74316711
Following gene: 74316706
Centisome position: 25.13
GC content: 67.06
Gene sequence:
>762_bases ATGACATTACGCGCCCTATTATTCGACGTGGACGGCACCCTTGCCGATACCGAACGGGACGGCCACCGGCCGGCCTTCAA TCAAGCCTTCGCCGACGCCGGACTCGACTGGCAGTGGGACGTGGATCTGTACGGCAAACTGCTCGCCGTCACCGGCGGAA AAGAGCGGATGAAACACTACATCGAAGCCTTCCGCCCCGACTATCGGCGGCCGGACAATTTCGACGAAATGGTCGCGAAA CTGCATCAGGCCAAAACACGTATCTACGCCGACCTCGCCGCTCGTGGTGGTATTCCCATGCGCCCCGGCGTCCGGCGCCT GCTCGAGGAGGCGCGCGCCGCAGGCCTGCGCCTTGCGATCGCGACGACGACGACGCCGGAAAACGTCACCGTTCTGCTCG AACACAGCCTCGGCCCGGGCACCCAGGAGTGGTTCGAGGTGATCGCCGCCGGCGACGTCGTCCCCGCGAAGAAGCCCGCC CCCGACATCTATCACTACGCGTTGGAGGCGATGGGGCTTGCGGCCGCGGACTGCCTCGCGTTCGAGGACTCGGAGAACGG CCTGCGCGCGAGCCTCGGCGCCGGACTCAAAACCCTCGTGACGGTCAACGACTACACGCTCGACCACGATTTCAGCGGCG CGGCCGCCGTGCTCTCCGATCTCGGCGAGCCCGAGGCCCCGGCGCGCCGCCTGACCGGCCCCGCCCTCCCCGGCCCCTGC GTCGACGTCGCCTATCTCAAAACGCTGCATCGCAGCCAGTGA
Upstream 100 bases:
>100_bases ATCAAAGTTTCAGCCATCTCGTTCTCTTCGAAAATTCACAGTTCCGGGGCAAGCCCAACCCCGACTTAATATCAGAATCG CATTCCTGCCGCAACCCGAA
Downstream 100 bases:
>100_bases TGAGGGGTCAGGATGCAGGGATCAGAATTCAGGGAGCGAAGCCGAATTAGCGCCACCCCTGACCCCCAGCCCCTGGCCCC TAGCCCCTAGCGCCTAGCGC
Product: HAD family hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MTLRALLFDVDGTLADTERDGHRPAFNQAFADAGLDWQWDVDLYGKLLAVTGGKERMKHYIEAFRPDYRRPDNFDEMVAK LHQAKTRIYADLAARGGIPMRPGVRRLLEEARAAGLRLAIATTTTPENVTVLLEHSLGPGTQEWFEVIAAGDVVPAKKPA PDIYHYALEAMGLAAADCLAFEDSENGLRASLGAGLKTLVTVNDYTLDHDFSGAAAVLSDLGEPEAPARRLTGPALPGPC VDVAYLKTLHRSQ
Sequences:
>Translated_253_residues MTLRALLFDVDGTLADTERDGHRPAFNQAFADAGLDWQWDVDLYGKLLAVTGGKERMKHYIEAFRPDYRRPDNFDEMVAK LHQAKTRIYADLAARGGIPMRPGVRRLLEEARAAGLRLAIATTTTPENVTVLLEHSLGPGTQEWFEVIAAGDVVPAKKPA PDIYHYALEAMGLAAADCLAFEDSENGLRASLGAGLKTLVTVNDYTLDHDFSGAAAVLSDLGEPEAPARRLTGPALPGPC VDVAYLKTLHRSQ >Mature_252_residues TLRALLFDVDGTLADTERDGHRPAFNQAFADAGLDWQWDVDLYGKLLAVTGGKERMKHYIEAFRPDYRRPDNFDEMVAKL HQAKTRIYADLAARGGIPMRPGVRRLLEEARAAGLRLAIATTTTPENVTVLLEHSLGPGTQEWFEVIAAGDVVPAKKPAP DIYHYALEAMGLAAADCLAFEDSENGLRASLGAGLKTLVTVNDYTLDHDFSGAAAVLSDLGEPEAPARRLTGPALPGPCV DVAYLKTLHRSQ
Specific function: Unknown
COG id: COG0637
COG function: function code R; Predicted phosphatase/phosphohexomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006402 - InterPro: IPR005833 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: NA
Molecular weight: Translated: 27510; Mature: 27379
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLRALLFDVDGTLADTERDGHRPAFNQAFADAGLDWQWDVDLYGKLLAVTGGKERMKHY CCCEEEEEECCCCEECCCCCCCCCHHHHHHHHCCCCEEECHHHHCEEEEECCCHHHHHHH IEAFRPDYRRPDNFDEMVAKLHQAKTRIYADLAARGGIPMRPGVRRLLEEARAAGLRLAI HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEE ATTTTPENVTVLLEHSLGPGTQEWFEVIAAGDVVPAKKPAPDIYHYALEAMGLAAADCLA EECCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHE FEDSENGLRASLGAGLKTLVTVNDYTLDHDFSGAAAVLSDLGEPEAPARRLTGPALPGPC ECCCCCCCHHHHCCCCEEEEEEECEEECCCCCHHHHHHHHCCCCCCCHHHCCCCCCCCCH VDVAYLKTLHRSQ HHHHHHHHHHCCC >Mature Secondary Structure TLRALLFDVDGTLADTERDGHRPAFNQAFADAGLDWQWDVDLYGKLLAVTGGKERMKHY CCEEEEEECCCCEECCCCCCCCCHHHHHHHHCCCCEEECHHHHCEEEEECCCHHHHHHH IEAFRPDYRRPDNFDEMVAKLHQAKTRIYADLAARGGIPMRPGVRRLLEEARAAGLRLAI HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEE ATTTTPENVTVLLEHSLGPGTQEWFEVIAAGDVVPAKKPAPDIYHYALEAMGLAAADCLA EECCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHE FEDSENGLRASLGAGLKTLVTVNDYTLDHDFSGAAAVLSDLGEPEAPARRLTGPALPGPC ECCCCCCCHHHHCCCCEEEEEEECEEECCCCCHHHHHHHHCCCCCCCHHHCCCCCCCCCH VDVAYLKTLHRSQ HHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1429456 [H]