| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is ybbP [H]
Identifier: 74316702
GI number: 74316702
Start: 724165
End: 726654
Strand: Reverse
Name: ybbP [H]
Synonym: Tbd_0684
Alternate gene names: 74316702
Gene position: 726654-724165 (Counterclockwise)
Preceding gene: 74316703
Following gene: 74316700
Centisome position: 24.97
GC content: 71.29
Gene sequence:
>2490_bases ATGAATTTCCTTCGGCTCGGGCTGTGGATGCTGCGCCGCGAGGGCAGGCAGAAAGGCTTCGCCGCCAGCGGCGAGTGGCG CGTGTTGCTGCTCGCCCTGGTCATCGGCGTCGGCAGCGTGTCGACGACGGGCTTCCTCGGCGACCGCCTGAAGCGCGCGA TGAACGAGCAGGGCGCGAGCTTTCTCGGCGCCGACCTGCTCGTCACGAGCCCGCGTCGCATCGAGGCGTGGCCGGACCAC GCGCTTCGTCGTTCGGCCGCGCTCGATTTCACGAGCATGGTCAGCCGCGGCGACGCGTTCCAGCTCGCCGCCGTGCGCGC CGTCGACGCACGCTACCCGCTGCGCGGCAGCGTGCGGATCGCCGAACGCGCCTTCGCGCCAGGCAACGCCCGCCCCGCGC TACCGCCCCGGGGCGCCGTGTTCGTCGATCAGGCGCTGTTGCCGCTCCTCGACGCGCAAGTCGGCGATCGCGTCCGCATC GGCGAAGCCGAATTTCGCATCGCCGGCGTCGTGGTCGAAGAGCCGGGCCAGCTCGGCGGCGTGTTCGGACTCGCGCCGCG CGTGTTCCTGCGCTCCGACGAACTCGCGCAAACGCGCATCGTGCAGCCGGGAAGCCGCGTCACCCACGTCTATCAGTTCG CCGGCGAACCCGCGGCGCTCGCGGCCTTCGCCCGCGCGCTCAAGCCGCGCCTCGACAGCACCCAGCGCCTGATCGGTTCG CGTGAAGGCGTCGAGACGCTGCGCGGCGCGTTCGCGAACGCCGATCGCTACATCCAGCTCACGGCGCTGATCAGCCTGCT GCTATCGGTGGCGGCGATCGCGATCGCCGCGCGCCGCCACGCGCTGCGCCACTACGACCAGGCCGCGCTGCTGCGCTGCC TCGGTGCGACGACCCGGCAGCTGCGCGTGCTATACGTCACGCAATTGCTCGTGCTCGGACTGCTGGGCAGCCTCCTCGGC GTTGCAATCGGCGCGCTCATGCAGCAGGCGCTTGCCGGAATGCTGCTGCCGGACGCCGTCACCCGCCTGCCGGCGCTCGG CTGGGCGCCGGTCGGCGCGGCCATCGCGAGCGGGCTGCTCGCGCTGGCCGGCGCCAGCCTGCCCGCGCTCGTGCGCCTGA TCCGGGTGCCGCCGCTGCGCGTGTTGCGGCGCGACCTGCCGCCGCTGCCGCTGTCGGCGTGGATCAGCGCGACGACCAGC GTGGGCGCGCTGCTCGTGCTGATCGCCTGCTACGCGGGCGACGCCCGGCTCGTCGGCGTTTTCGTTGCGGCGCTCGCCGC ACTGGCCGGCGTGCTTGCCTTGCTGGCGCGTCTCGCTCTGCTCGCCGGCCGCGGCGTCCAGCTTCTCGCCCAGGGCCCCT TGCGCTTTGGCCTGGCGCAACTCCTGCGTCATCGTTTCGACAGCAGCCTGCAACTCGGCGCCTTCACGCTCGCGCTGTTT CTGGTCGCGCTGCTGGCGCTCGTGCGCAGCGACCTCGTCGCCGGCTGGCGCGCGCAATTGCCGCCGCAGGCGCCGAATTA CTTCCTCGTGAACATCCCGCCGCACGAGCAGGACGCCGTAGCGTCCTACCTCGCCGCGCATGACCTGCGGGCGTCGACGA TCTATCCGATGGTACGCGGCCGGCTGGTCACGAAAAACGGCGCGCCCATCGCCGAGACGCTGCCTCCCGAAGCGCGCAGC AGCAACACGCTGCGGCGCGAACTCAACCTGACCTGGACCGCGGCGCTGCCCGCGAACAACGAGGTGCTCGACGGGCGCTG GCACGGCGAGCGGCGCGGCGCAGAGATCTCGGTCGAGTCGGGGATGGCCGAGCGCCTGCAACTCGCGCTCGGCGACGCGC TCGGTTTCCAGATCGGTGACCAGACGCTGGCGGCACGCATCACGAGCATCCGCAGCGTGAAATGGGATTCGATGCAGCCC AACTTCTTCGTGATTTTCGCGCCTGGCCAGCTCGACGCCTTCCCGGCGAGTTCGATCGCGAGCGTCTACGTCTCGCCCCC GGCGAAGCAGGCTCTGCCGGGCTTCGTCAAATCCTTTCCCGGCGTCACGGTGCTCGCGCTCGACAAGCTCATCGCGAATA TCGAGGCCGTCTTCGCGCAGATCATCGGCGCGATCCAACTCTTGTTGGGGTTTCTGCTCGCCGCCGGCATGGCGGTCGTC GTCGCGACGCTCCTCGCGAGTCTCGATGCCCGGCAGCAGGAAGCGGTGCTCTTGCGCACGCTCGGCGCCGAGCGCGCCTA TCTGGCGAAGGCGCTGTGGAGCGAGTTCATCGTGCTCGGCGTGCTCGCGGGCCTGCTCGCGAGCGCCTGCGCCGAGGCCG CGATGGCGCTGATCGGGGACCGCCTGTTCGAGCTGCCGCCGCGCCTGCACCCCTGGCTCTGGCTCGTGCTCCCGGCCGCC GGCGCGCTGCTCGTCGGCGCGAGCGGCTGGCTGACCACGCGCCACATCACGCGCCTGCCGCCGATGCAGTCGATACGCGA ACTCGCCTGA
Upstream 100 bases:
>100_bases GCACGACCCTGATCCTCGTCACCCACGACGACGCGCTCGCCAGCCGCTGCCAGCGCCGTCTGCATCTCGTCGCCGGCCGC GCGCGCGAAGTGGAGGCGGC
Downstream 100 bases:
>100_bases GCGGCGGTTCCCGCGTCAGCAGTGCACGCGGCCGCCGAGCGGCTGCAGGTCGGCGCCGACCGCTTCGCGCGCGTCGAAGA CGAAACACCCGCCGCGGTAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 829; Mature: 829
Protein sequence:
>829_residues MNFLRLGLWMLRREGRQKGFAASGEWRVLLLALVIGVGSVSTTGFLGDRLKRAMNEQGASFLGADLLVTSPRRIEAWPDH ALRRSAALDFTSMVSRGDAFQLAAVRAVDARYPLRGSVRIAERAFAPGNARPALPPRGAVFVDQALLPLLDAQVGDRVRI GEAEFRIAGVVVEEPGQLGGVFGLAPRVFLRSDELAQTRIVQPGSRVTHVYQFAGEPAALAAFARALKPRLDSTQRLIGS REGVETLRGAFANADRYIQLTALISLLLSVAAIAIAARRHALRHYDQAALLRCLGATTRQLRVLYVTQLLVLGLLGSLLG VAIGALMQQALAGMLLPDAVTRLPALGWAPVGAAIASGLLALAGASLPALVRLIRVPPLRVLRRDLPPLPLSAWISATTS VGALLVLIACYAGDARLVGVFVAALAALAGVLALLARLALLAGRGVQLLAQGPLRFGLAQLLRHRFDSSLQLGAFTLALF LVALLALVRSDLVAGWRAQLPPQAPNYFLVNIPPHEQDAVASYLAAHDLRASTIYPMVRGRLVTKNGAPIAETLPPEARS SNTLRRELNLTWTAALPANNEVLDGRWHGERRGAEISVESGMAERLQLALGDALGFQIGDQTLAARITSIRSVKWDSMQP NFFVIFAPGQLDAFPASSIASVYVSPPAKQALPGFVKSFPGVTVLALDKLIANIEAVFAQIIGAIQLLLGFLLAAGMAVV VATLLASLDARQQEAVLLRTLGAERAYLAKALWSEFIVLGVLAGLLASACAEAAMALIGDRLFELPPRLHPWLWLVLPAA GALLVGASGWLTTRHITRLPPMQSIRELA
Sequences:
>Translated_829_residues MNFLRLGLWMLRREGRQKGFAASGEWRVLLLALVIGVGSVSTTGFLGDRLKRAMNEQGASFLGADLLVTSPRRIEAWPDH ALRRSAALDFTSMVSRGDAFQLAAVRAVDARYPLRGSVRIAERAFAPGNARPALPPRGAVFVDQALLPLLDAQVGDRVRI GEAEFRIAGVVVEEPGQLGGVFGLAPRVFLRSDELAQTRIVQPGSRVTHVYQFAGEPAALAAFARALKPRLDSTQRLIGS REGVETLRGAFANADRYIQLTALISLLLSVAAIAIAARRHALRHYDQAALLRCLGATTRQLRVLYVTQLLVLGLLGSLLG VAIGALMQQALAGMLLPDAVTRLPALGWAPVGAAIASGLLALAGASLPALVRLIRVPPLRVLRRDLPPLPLSAWISATTS VGALLVLIACYAGDARLVGVFVAALAALAGVLALLARLALLAGRGVQLLAQGPLRFGLAQLLRHRFDSSLQLGAFTLALF LVALLALVRSDLVAGWRAQLPPQAPNYFLVNIPPHEQDAVASYLAAHDLRASTIYPMVRGRLVTKNGAPIAETLPPEARS SNTLRRELNLTWTAALPANNEVLDGRWHGERRGAEISVESGMAERLQLALGDALGFQIGDQTLAARITSIRSVKWDSMQP NFFVIFAPGQLDAFPASSIASVYVSPPAKQALPGFVKSFPGVTVLALDKLIANIEAVFAQIIGAIQLLLGFLLAAGMAVV VATLLASLDARQQEAVLLRTLGAERAYLAKALWSEFIVLGVLAGLLASACAEAAMALIGDRLFELPPRLHPWLWLVLPAA GALLVGASGWLTTRHITRLPPMQSIRELA >Mature_829_residues MNFLRLGLWMLRREGRQKGFAASGEWRVLLLALVIGVGSVSTTGFLGDRLKRAMNEQGASFLGADLLVTSPRRIEAWPDH ALRRSAALDFTSMVSRGDAFQLAAVRAVDARYPLRGSVRIAERAFAPGNARPALPPRGAVFVDQALLPLLDAQVGDRVRI GEAEFRIAGVVVEEPGQLGGVFGLAPRVFLRSDELAQTRIVQPGSRVTHVYQFAGEPAALAAFARALKPRLDSTQRLIGS REGVETLRGAFANADRYIQLTALISLLLSVAAIAIAARRHALRHYDQAALLRCLGATTRQLRVLYVTQLLVLGLLGSLLG VAIGALMQQALAGMLLPDAVTRLPALGWAPVGAAIASGLLALAGASLPALVRLIRVPPLRVLRRDLPPLPLSAWISATTS VGALLVLIACYAGDARLVGVFVAALAALAGVLALLARLALLAGRGVQLLAQGPLRFGLAQLLRHRFDSSLQLGAFTLALF LVALLALVRSDLVAGWRAQLPPQAPNYFLVNIPPHEQDAVASYLAAHDLRASTIYPMVRGRLVTKNGAPIAETLPPEARS SNTLRRELNLTWTAALPANNEVLDGRWHGERRGAEISVESGMAERLQLALGDALGFQIGDQTLAARITSIRSVKWDSMQP NFFVIFAPGQLDAFPASSIASVYVSPPAKQALPGFVKSFPGVTVLALDKLIANIEAVFAQIIGAIQLLLGFLLAAGMAVV VATLLASLDARQQEAVLLRTLGAERAYLAKALWSEFIVLGVLAGLLASACAEAAMALIGDRLFELPPRLHPWLWLVLPAA GALLVGASGWLTTRHITRLPPMQSIRELA
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=815, Percent_Identity=33.7423312883436, Blast_Score=370, Evalue=1e-103,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 88423; Mature: 88423
Theoretical pI: Translated: 11.20; Mature: 11.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFLRLGLWMLRREGRQKGFAASGEWRVLLLALVIGVGSVSTTGFLGDRLKRAMNEQGAS CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCH FLGADLLVTSPRRIEAWPDHALRRSAALDFTSMVSRGDAFQLAAVRAVDARYPLRGSVRI HHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHH AERAFAPGNARPALPPRGAVFVDQALLPLLDAQVGDRVRIGEAEFRIAGVVVEEPGQLGG HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCEEEEEEEEECCCCCCC VFGLAPRVFLRSDELAQTRIVQPGSRVTHVYQFAGEPAALAAFARALKPRLDSTQRLIGS HHHCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHCC REGVETLRGAFANADRYIQLTALISLLLSVAAIAIAARRHALRHYDQAALLRCLGATTRQ CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH LRVLYVTQLLVLGLLGSLLGVAIGALMQQALAGMLLPDAVTRLPALGWAPVGAAIASGLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH ALAGASLPALVRLIRVPPLRVLRRDLPPLPLSAWISATTSVGALLVLIACYAGDARLVGV HHHCCCHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH FVAALAALAGVLALLARLALLAGRGVQLLAQGPLRFGLAQLLRHRFDSSLQLGAFTLALF HHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH LVALLALVRSDLVAGWRAQLPPQAPNYFLVNIPPHEQDAVASYLAAHDLRASTIYPMVRG HHHHHHHHHHHHHCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHCC RLVTKNGAPIAETLPPEARSSNTLRRELNLTWTAALPANNEVLDGRWHGERRGAEISVES EEEECCCCCCHHCCCCCCCCCCHHHHHCCEEEEEECCCCCCEECCCCCCCCCCCEEEHHC GMAERLQLALGDALGFQIGDQTLAARITSIRSVKWDSMQPNFFVIFAPGQLDAFPASSIA CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHH SVYVSPPAKQALPGFVKSFPGVTVLALDKLIANIEAVFAQIIGAIQLLLGFLLAAGMAVV EEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VATLLASLDARQQEAVLLRTLGAERAYLAKALWSEFIVLGVLAGLLASACAEAAMALIGD HHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLFELPPRLHPWLWLVLPAAGALLVGASGWLTTRHITRLPPMQSIRELA HHHHCCCCCCHHHHHHHHHCCCEEECCCCCEEHHHHHCCCCHHHHHHCC >Mature Secondary Structure MNFLRLGLWMLRREGRQKGFAASGEWRVLLLALVIGVGSVSTTGFLGDRLKRAMNEQGAS CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCH FLGADLLVTSPRRIEAWPDHALRRSAALDFTSMVSRGDAFQLAAVRAVDARYPLRGSVRI HHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHH AERAFAPGNARPALPPRGAVFVDQALLPLLDAQVGDRVRIGEAEFRIAGVVVEEPGQLGG HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCEEEEEEEEECCCCCCC VFGLAPRVFLRSDELAQTRIVQPGSRVTHVYQFAGEPAALAAFARALKPRLDSTQRLIGS HHHCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHCC REGVETLRGAFANADRYIQLTALISLLLSVAAIAIAARRHALRHYDQAALLRCLGATTRQ CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH LRVLYVTQLLVLGLLGSLLGVAIGALMQQALAGMLLPDAVTRLPALGWAPVGAAIASGLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH ALAGASLPALVRLIRVPPLRVLRRDLPPLPLSAWISATTSVGALLVLIACYAGDARLVGV HHHCCCHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH FVAALAALAGVLALLARLALLAGRGVQLLAQGPLRFGLAQLLRHRFDSSLQLGAFTLALF HHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH LVALLALVRSDLVAGWRAQLPPQAPNYFLVNIPPHEQDAVASYLAAHDLRASTIYPMVRG HHHHHHHHHHHHHCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHCC RLVTKNGAPIAETLPPEARSSNTLRRELNLTWTAALPANNEVLDGRWHGERRGAEISVES EEEECCCCCCHHCCCCCCCCCCHHHHHCCEEEEEECCCCCCEECCCCCCCCCCCEEEHHC GMAERLQLALGDALGFQIGDQTLAARITSIRSVKWDSMQPNFFVIFAPGQLDAFPASSIA CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHH SVYVSPPAKQALPGFVKSFPGVTVLALDKLIANIEAVFAQIIGAIQLLLGFLLAAGMAVV EEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VATLLASLDARQQEAVLLRTLGAERAYLAKALWSEFIVLGVLAGLLASACAEAAMALIGD HHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLFELPPRLHPWLWLVLPAAGALLVGASGWLTTRHITRLPPMQSIRELA HHHHCCCCCCHHHHHHHHHCCCEEECCCCCEEHHHHHCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]