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The map label for this gene is yggS [C]

Identifier: 74316686

GI number: 74316686

Start: 708952

End: 709662

Strand: Reverse

Name: yggS [C]

Synonym: Tbd_0668

Alternate gene names: 74316686

Gene position: 709662-708952 (Counterclockwise)

Preceding gene: 74316687

Following gene: 74316685

Centisome position: 24.39

GC content: 67.65

Gene sequence:

>711_bases
ATGTCGGAAACGATCGCCGCGCGGCTGCTGACGCTGCACGACCGGCTGGCGCGGGCCGCACTCGACTGCGCGCGTGATCC
GCGCGCCGTGACACTGCTCGCCGTCAGCAAGACCTACGATCACAACGCCGTGCGCAATATCGCACGCCTCGGGCATCGCG
AATTCGGCGAGAACTATCTGCAGGAAGCACTCGACAAGCAGCGGGCGCTTGCCGATCTCGATCTGGTGTGGCATTTCATC
GGGCCGATCCAGCGCAACAAGACGCGTCGCGTCGCCGAAAACTTTTCCTGGGCGCACTGCGTCGACCGCTTATGCATCGC
GGAGCGTCTGTCCGAGCAGCGGCCTGCCGACGCTCCGCCCTTGAACGTCTGCCTGGAAGTCAATGTGAGTGGCGAGCCGA
GCAAGGGGGGCGTCCCCGCGGACGCCGCGATCGCGCTTGCGAAGCAGGTCTCGGCCTTGCCCCGGCTGAGACTGCGGGGC
TTGATGGCGATACCCGCGCCGACCCGCGATCGCGCCTGTCAGCGCGCCGCCTTTGCCAGGGTGCGCCGTCTGTTCGAGGC
GCTCAAGGCGCACGGACTTCCCGTCGACACGCTGTCGATGGGCATGTCCGGCGACTTCGAGGCGGCGATCGCGGAAGGGG
CGACGATCGTGCGCATCGGCACGGCGATTTTCGGCCCGCGCTTCTATCCCGAGCTGGCCGCGCACCGGTAG

Upstream 100 bases:

>100_bases
CCTCTGTGCCGAGCACACCCTTTCGGACATGGACCGGGTGCTCGATTCGGTCTCGCGCCACGGCCGCGACCTCGGCATCA
TCCAGTAACGGGAGGCCGTC

Downstream 100 bases:

>100_bases
CGGGAGCCTCACGTCATGCATGTCCGCGTGTATTCGTCGATAGACGAGATCGAGCCTCGCGCCTGGGACGAAATTCTCGG
TCGCGACGCCACGATCTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSETIAARLLTLHDRLARAALDCARDPRAVTLLAVSKTYDHNAVRNIARLGHREFGENYLQEALDKQRALADLDLVWHFI
GPIQRNKTRRVAENFSWAHCVDRLCIAERLSEQRPADAPPLNVCLEVNVSGEPSKGGVPADAAIALAKQVSALPRLRLRG
LMAIPAPTRDRACQRAAFARVRRLFEALKAHGLPVDTLSMGMSGDFEAAIAEGATIVRIGTAIFGPRFYPELAAHR

Sequences:

>Translated_236_residues
MSETIAARLLTLHDRLARAALDCARDPRAVTLLAVSKTYDHNAVRNIARLGHREFGENYLQEALDKQRALADLDLVWHFI
GPIQRNKTRRVAENFSWAHCVDRLCIAERLSEQRPADAPPLNVCLEVNVSGEPSKGGVPADAAIALAKQVSALPRLRLRG
LMAIPAPTRDRACQRAAFARVRRLFEALKAHGLPVDTLSMGMSGDFEAAIAEGATIVRIGTAIFGPRFYPELAAHR
>Mature_235_residues
SETIAARLLTLHDRLARAALDCARDPRAVTLLAVSKTYDHNAVRNIARLGHREFGENYLQEALDKQRALADLDLVWHFIG
PIQRNKTRRVAENFSWAHCVDRLCIAERLSEQRPADAPPLNVCLEVNVSGEPSKGGVPADAAIALAKQVSALPRLRLRGL
MAIPAPTRDRACQRAAFARVRRLFEALKAHGLPVDTLSMGMSGDFEAAIAEGATIVRIGTAIFGPRFYPELAAHR

Specific function: Perhaps involved in proline biosynthesis [H]

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=240, Percent_Identity=35.8333333333333, Blast_Score=114, Evalue=7e-26,
Organism=Escherichia coli, GI1789321, Length=228, Percent_Identity=51.7543859649123, Blast_Score=224, Evalue=6e-60,
Organism=Caenorhabditis elegans, GI17533025, Length=241, Percent_Identity=31.9502074688797, Blast_Score=108, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6319435, Length=208, Percent_Identity=34.6153846153846, Blast_Score=105, Evalue=8e-24,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=38.3886255924171, Blast_Score=120, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25944; Mature: 25813

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETIAARLLTLHDRLARAALDCARDPRAVTLLAVSKTYDHNAVRNIARLGHREFGENYL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
QEALDKQRALADLDLVWHFIGPIQRNKTRRVAENFSWAHCVDRLCIAERLSEQRPADAPP
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC
LNVCLEVNVSGEPSKGGVPADAAIALAKQVSALPRLRLRGLMAIPAPTRDRACQRAAFAR
CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHH
VRRLFEALKAHGLPVDTLSMGMSGDFEAAIAEGATIVRIGTAIFGPRFYPELAAHR
HHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHCCCEEEEEHHHHHCCHHHHHHHCCC
>Mature Secondary Structure 
SETIAARLLTLHDRLARAALDCARDPRAVTLLAVSKTYDHNAVRNIARLGHREFGENYL
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
QEALDKQRALADLDLVWHFIGPIQRNKTRRVAENFSWAHCVDRLCIAERLSEQRPADAPP
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC
LNVCLEVNVSGEPSKGGVPADAAIALAKQVSALPRLRLRGLMAIPAPTRDRACQRAAFAR
CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHH
VRRLFEALKAHGLPVDTLSMGMSGDFEAAIAEGATIVRIGTAIFGPRFYPELAAHR
HHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHCCCEEEEEHHHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1676385; 10984043; 2107123 [H]