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The map label for this gene is ycaO [H]

Identifier: 74316630

GI number: 74316630

Start: 640889

End: 642637

Strand: Reverse

Name: ycaO [H]

Synonym: Tbd_0612

Alternate gene names: 74316630

Gene position: 642637-640889 (Counterclockwise)

Preceding gene: 74316632

Following gene: 74316629

Centisome position: 22.09

GC content: 66.04

Gene sequence:

>1749_bases
ATGCTGTCGGTCATGACTTCCATCGATGACGCAATGAACGCCCCCGAACATTTCATTCCCGGCAAGGACGCCTCGCTCGA
AGCCTCGATCGCCACCCTGCATGCCAAGCTCGAGGCGATCGGCTTCCATGTCGAGGAGCGCTCCTGGCTCAACCCGGTCG
AGGGCGTGTGGTCGGTGCACATCCGCGACCGCGACTGCCCCCTGCTGTTCACCAACGGCAAGGGCGGCTCGGAACTCGCG
GCGCGGGCGAGCGCACTCGGCGAATTCTTCGAGCGGCTGTCGACCAATTATTTCTGGACCCACTTCTATCTGGGCGACAC
GATCGCCAACCGGCACTACGTCCACCACCCCGAGGAGCGCTGGTTCGAACTGGGCGACGGCAACGCCTGGCCGAAAGGCC
TGCTCACGCCCGAACTGCAGAGGCTCTACGACCCGGATCGGGCCGTGCGCGCCGCCCAACTGATCGACCTCAATTCCGGC
AACGCCGATCGTGGCATCTGCGCCATCCCCTACCAGCGGCTCGCCGACGGCGAAACCGTGTATTTCCCGGTCAACCTAAT
CGGCAACCTCTACGTCAGCAACGGCATGTCGGCCGGCAACACGCTGAAGGAAGCGCGGGCGCAGGCGCTCGCCGAAATCT
TCGAGCGCAACGTCAAGTTCCGCATCATCCGCGATGGCCTCTGCCTGCCCGACGTCCCCGCGGCCGTGATCGACCGTTAT
CCACGCATCGCGGCCGGCATCCGCGGGCTGCGCGAAGCGGGCTTCGGCATTCTGGTCAAGGACGCCTCGCTCGGCGGCCG
CTACCCGGTCATGAACGTCACCCTGCTGCATCCGGACGACCAAGGCTGCTTCGCGAGCTTCGGCGCGCACCCGCGCTTCG
AGGTCGCGCTCGAGCGCGCCTTGACCGAGTTGTTGCAAGGCCGCGCGCTCGATTCGCTCGAGGGCTTCCCGGCGCCGGGC
TTCGACGAGTCGGAGATCGCCGATCCGCAGAATCTGGAAATCCACTTCGTCGACTCCAGCGGCGTGATTTCCTGGCGCTT
CCTGCGCGACACGCCCGACTTCGAATTCGTCGACTGGAATTTCGCCACCACCACCGACGAGGATTACCGCTGGTCGGTCG
ACGCGCTGCATGCGGAAGGCCACGAGATCTACGTCGCGGATTTCACCCACCTCGGCGTCTACGCCTGTCGCATCCTGGTG
CCGGGGGTATCCGAGATCTACCCCTTCGAGGAACTCGAATTCGAGAACAACAGCGTCGGCAACCTGATCCGTCCGGCGCT
CGCGCGCCTGCCCGAGCTTTCCGACGACGAATGCGCCGAGCTGCTCGATCTGATCGGCGAACTCGAACTCGCCGACGACC
GCCTGGTGAGCGTGCTGATCGGCCTCGCCCCGGATCCCGACTCGCCGTGGACCGACCTGCGCGTCGGCGAGTTGAAGTTG
TTGCTCGCGCTGGCGATCGGCGACGACGACGCGATCCTCGAAGGCTGCGCCTGGATCGCCCAGTACGGCCAGCGCAGCGA
TACGCGCCTCAAGGTCTACCGCTGCATCGCCGACCTCGTCCAGCTCGACGACCCGGGTGCGTTCGAGCCGGCGCTGGCGC
TGCTGTATGGCCGCGAGACGCTGGCACAGGCGTTCGCGCTCTACAACCAGGACGAGCGTTTCTTCGGGCTGACCACGCTG
GGCGACGACTTCGAGGGCAGCGCGATCCACCGGCGCCTGCTGGAGGCGTACCGCAAGGTGCGCGGCTAA

Upstream 100 bases:

>100_bases
GCAACGCGCACAGAGCCAGCAACACGAACAATCGCTTGGACATCAGCTTCCTCGGACCTGGAGATCGGCTTGATTTTACG
CCGCGCTTGACGCGTCGCTT

Downstream 100 bases:

>100_bases
AGCCCAAATGAAGATCCCCAGGCGGCTCGAACCCCTGCTCGAAGACGGCCTGATCGACGGCGTCGTGCGTCAGCTCATGA
GCGGCAAGGAGGCGATGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 582; Mature: 582

Protein sequence:

>582_residues
MLSVMTSIDDAMNAPEHFIPGKDASLEASIATLHAKLEAIGFHVEERSWLNPVEGVWSVHIRDRDCPLLFTNGKGGSELA
ARASALGEFFERLSTNYFWTHFYLGDTIANRHYVHHPEERWFELGDGNAWPKGLLTPELQRLYDPDRAVRAAQLIDLNSG
NADRGICAIPYQRLADGETVYFPVNLIGNLYVSNGMSAGNTLKEARAQALAEIFERNVKFRIIRDGLCLPDVPAAVIDRY
PRIAAGIRGLREAGFGILVKDASLGGRYPVMNVTLLHPDDQGCFASFGAHPRFEVALERALTELLQGRALDSLEGFPAPG
FDESEIADPQNLEIHFVDSSGVISWRFLRDTPDFEFVDWNFATTTDEDYRWSVDALHAEGHEIYVADFTHLGVYACRILV
PGVSEIYPFEELEFENNSVGNLIRPALARLPELSDDECAELLDLIGELELADDRLVSVLIGLAPDPDSPWTDLRVGELKL
LLALAIGDDDAILEGCAWIAQYGQRSDTRLKVYRCIADLVQLDDPGAFEPALALLYGRETLAQAFALYNQDERFFGLTTL
GDDFEGSAIHRRLLEAYRKVRG

Sequences:

>Translated_582_residues
MLSVMTSIDDAMNAPEHFIPGKDASLEASIATLHAKLEAIGFHVEERSWLNPVEGVWSVHIRDRDCPLLFTNGKGGSELA
ARASALGEFFERLSTNYFWTHFYLGDTIANRHYVHHPEERWFELGDGNAWPKGLLTPELQRLYDPDRAVRAAQLIDLNSG
NADRGICAIPYQRLADGETVYFPVNLIGNLYVSNGMSAGNTLKEARAQALAEIFERNVKFRIIRDGLCLPDVPAAVIDRY
PRIAAGIRGLREAGFGILVKDASLGGRYPVMNVTLLHPDDQGCFASFGAHPRFEVALERALTELLQGRALDSLEGFPAPG
FDESEIADPQNLEIHFVDSSGVISWRFLRDTPDFEFVDWNFATTTDEDYRWSVDALHAEGHEIYVADFTHLGVYACRILV
PGVSEIYPFEELEFENNSVGNLIRPALARLPELSDDECAELLDLIGELELADDRLVSVLIGLAPDPDSPWTDLRVGELKL
LLALAIGDDDAILEGCAWIAQYGQRSDTRLKVYRCIADLVQLDDPGAFEPALALLYGRETLAQAFALYNQDERFFGLTTL
GDDFEGSAIHRRLLEAYRKVRG
>Mature_582_residues
MLSVMTSIDDAMNAPEHFIPGKDASLEASIATLHAKLEAIGFHVEERSWLNPVEGVWSVHIRDRDCPLLFTNGKGGSELA
ARASALGEFFERLSTNYFWTHFYLGDTIANRHYVHHPEERWFELGDGNAWPKGLLTPELQRLYDPDRAVRAAQLIDLNSG
NADRGICAIPYQRLADGETVYFPVNLIGNLYVSNGMSAGNTLKEARAQALAEIFERNVKFRIIRDGLCLPDVPAAVIDRY
PRIAAGIRGLREAGFGILVKDASLGGRYPVMNVTLLHPDDQGCFASFGAHPRFEVALERALTELLQGRALDSLEGFPAPG
FDESEIADPQNLEIHFVDSSGVISWRFLRDTPDFEFVDWNFATTTDEDYRWSVDALHAEGHEIYVADFTHLGVYACRILV
PGVSEIYPFEELEFENNSVGNLIRPALARLPELSDDECAELLDLIGELELADDRLVSVLIGLAPDPDSPWTDLRVGELKL
LLALAIGDDDAILEGCAWIAQYGQRSDTRLKVYRCIADLVQLDDPGAFEPALALLYGRETLAQAFALYNQDERFFGLTTL
GDDFEGSAIHRRLLEAYRKVRG

Specific function: Unknown

COG id: COG1944

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0142 family [H]

Homologues:

Organism=Escherichia coli, GI87081799, Length=576, Percent_Identity=49.6527777777778, Blast_Score=555, Evalue=1e-159,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003776 [H]

Pfam domain/function: PF02624 YcaO [H]

EC number: NA

Molecular weight: Translated: 64817; Mature: 64817

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVMTSIDDAMNAPEHFIPGKDASLEASIATLHAKLEAIGFHVEERSWLNPVEGVWSVH
CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEECCCCCCCCCCCEEEEE
IRDRDCPLLFTNGKGGSELAARASALGEFFERLSTNYFWTHFYLGDTIANRHYVHHPEER
EECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCCCCCCCHHH
WFELGDGNAWPKGLLTPELQRLYDPDRAVRAAQLIDLNSGNADRGICAIPYQRLADGETV
HEECCCCCCCCCCCCCHHHHHHCCHHHHHHHHHEEECCCCCCCCCEEECCHHHHCCCCEE
YFPVNLIGNLYVSNGMSAGNTLKEARAQALAEIFERNVKFRIIRDGLCLPDVPAAVIDRY
EEEHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHCC
PRIAAGIRGLREAGFGILVKDASLGGRYPVMNVTLLHPDDQGCFASFGAHPRFEVALERA
HHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCCCCCHHHHCCCCCHHHHHHHHH
LTELLQGRALDSLEGFPAPGFDESEIADPQNLEIHFVDSSGVISWRFLRDTPDFEFVDWN
HHHHHCCCCCHHCCCCCCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECE
FATTTDEDYRWSVDALHAEGHEIYVADFTHLGVYACRILVPGVSEIYPFEELEFENNSVG
EEECCCCCCEEEEEEEECCCCEEEEEEHHHHHHHHHHHHCCCHHHHCCCHHCCCCCCCCH
NLIRPALARLPELSDDECAELLDLIGELELADDRLVSVLIGLAPDPDSPWTDLRVGELKL
HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHEEE
LLALAIGDDDAILEGCAWIAQYGQRSDTRLKVYRCIADLVQLDDPGAFEPALALLYGRET
EEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LAQAFALYNQDERFFGLTTLGDDFEGSAIHRRLLEAYRKVRG
HHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLSVMTSIDDAMNAPEHFIPGKDASLEASIATLHAKLEAIGFHVEERSWLNPVEGVWSVH
CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEECCCCCCCCCCCEEEEE
IRDRDCPLLFTNGKGGSELAARASALGEFFERLSTNYFWTHFYLGDTIANRHYVHHPEER
EECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCCCCCCCHHH
WFELGDGNAWPKGLLTPELQRLYDPDRAVRAAQLIDLNSGNADRGICAIPYQRLADGETV
HEECCCCCCCCCCCCCHHHHHHCCHHHHHHHHHEEECCCCCCCCCEEECCHHHHCCCCEE
YFPVNLIGNLYVSNGMSAGNTLKEARAQALAEIFERNVKFRIIRDGLCLPDVPAAVIDRY
EEEHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHCC
PRIAAGIRGLREAGFGILVKDASLGGRYPVMNVTLLHPDDQGCFASFGAHPRFEVALERA
HHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCCCCCHHHHCCCCCHHHHHHHHH
LTELLQGRALDSLEGFPAPGFDESEIADPQNLEIHFVDSSGVISWRFLRDTPDFEFVDWN
HHHHHCCCCCHHCCCCCCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECE
FATTTDEDYRWSVDALHAEGHEIYVADFTHLGVYACRILVPGVSEIYPFEELEFENNSVG
EEECCCCCCEEEEEEEECCCCEEEEEEHHHHHHHHHHHHCCCHHHHCCCHHCCCCCCCCH
NLIRPALARLPELSDDECAELLDLIGELELADDRLVSVLIGLAPDPDSPWTDLRVGELKL
HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHEEE
LLALAIGDDDAILEGCAWIAQYGQRSDTRLKVYRCIADLVQLDDPGAFEPALALLYGRET
EEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LAQAFALYNQDERFFGLTTLGDDFEGSAIHRRLLEAYRKVRG
HHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]