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The map label for this gene is kdsD [H]

Identifier: 74316556

GI number: 74316556

Start: 561750

End: 562736

Strand: Reverse

Name: kdsD [H]

Synonym: Tbd_0538

Alternate gene names: 74316556

Gene position: 562736-561750 (Counterclockwise)

Preceding gene: 74316558

Following gene: 74316555

Centisome position: 19.34

GC content: 66.77

Gene sequence:

>987_bases
ATGCAAGTCCAATCCCTCTCCGCCGAACATTCACTCGCGCTCGCGCGTCAGGTCCTCGAGATCGAAGCCGACGCGCTGCA
TACCGTTTCGACACGTCTCGATCACGGATTTGCCGACGCCGTTCGCCTGATCCTCGCCTGCACCGGGCGGGTCGTCGTCT
CCGGGATGGGCAAATCGGGGCACGTCGGTAGCAAGATCGCCGCCACCCTCGCGTCGACCGGAACGCCGGCATTTTTCATG
CATCCCGGGGAAGCGAGCCACGGCGACCTCGGCATGATCGCGCACGACGACGTCGTACTCGCGCTGTCCAATTCCGGCGA
AAGCAGCGAGATCGTCTGCATCGTGCCGCTCATCAAGCGACGCGGCGCGAAGCTCGTCGCGATGACCGGCAACCCGGCGT
CGACGCTCGCGCGCGAGGCCGATGCCCACCTCAACGCCAAGGTCGACAAGGAGGCGTGTCCGCTCAACCTCGCGCCGACC
GCGAGCACGACGGCGGCACTCGCGCTCGGAGACGCGCTCGCGGTCGCCCTGCTCGACGCACGCGGTTTTTCGGCCGACGA
TTTCGCGCGCACCCACCCGGGCGGCAGCCTCGGGCGGCGGCTGCTCGTTCATGTCGCCGACGTCATGCACGGCGGCGACG
CGCTGCCGAAAGTCGGGCGCGACGCGACGCTCAAGGCCGCGCTGTTCGAAATGACCAAAAAGGGCCTGGGCATGACCGCC
GTGGTCGATGCCGACGACCGCGTCGTCGGGCTCTTCACCGACGGCGACCTGCGTCGGACGCTCGAACATGCTCTCGACAT
CCAGCACGCGAAAATCGCCGACCTCATGACACCGAACCCGAAGACGATCCGCGCGGACGAACTCGCCGCCGCGGCAGTGG
AGAAAATGGAGACGCTGAAAATCAACGGTCTGCTCGTCGTCGACGCCGACAATCGCCTGGTCGGCGCCCTCAACATGCAC
GACCTGCTGAAAGCGGGGGTGGTGTGA

Upstream 100 bases:

>100_bases
GGTCGTCGATGGCTGAGTGTTATTCGGGGGGGCGCGATACGCTCGGCCGGACGCAAGGAAATGGGCGGCGTAAACGCGGC
GTTTAGTATACTTGCCGCCC

Downstream 100 bases:

>100_bases
TGGCCGACGACGCGATCGCCCGGGCGCGAAAAATCCGCCTCATCGCCTTCGACGTCGACGGCGTCATGACCGACGGCACG
CTGTTCCTCGCCGACGACGG

Product: capsule expression protein KpsF/GutQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MQVQSLSAEHSLALARQVLEIEADALHTVSTRLDHGFADAVRLILACTGRVVVSGMGKSGHVGSKIAATLASTGTPAFFM
HPGEASHGDLGMIAHDDVVLALSNSGESSEIVCIVPLIKRRGAKLVAMTGNPASTLAREADAHLNAKVDKEACPLNLAPT
ASTTAALALGDALAVALLDARGFSADDFARTHPGGSLGRRLLVHVADVMHGGDALPKVGRDATLKAALFEMTKKGLGMTA
VVDADDRVVGLFTDGDLRRTLEHALDIQHAKIADLMTPNPKTIRADELAAAAVEKMETLKINGLLVVDADNRLVGALNMH
DLLKAGVV

Sequences:

>Translated_328_residues
MQVQSLSAEHSLALARQVLEIEADALHTVSTRLDHGFADAVRLILACTGRVVVSGMGKSGHVGSKIAATLASTGTPAFFM
HPGEASHGDLGMIAHDDVVLALSNSGESSEIVCIVPLIKRRGAKLVAMTGNPASTLAREADAHLNAKVDKEACPLNLAPT
ASTTAALALGDALAVALLDARGFSADDFARTHPGGSLGRRLLVHVADVMHGGDALPKVGRDATLKAALFEMTKKGLGMTA
VVDADDRVVGLFTDGDLRRTLEHALDIQHAKIADLMTPNPKTIRADELAAAAVEKMETLKINGLLVVDADNRLVGALNMH
DLLKAGVV
>Mature_328_residues
MQVQSLSAEHSLALARQVLEIEADALHTVSTRLDHGFADAVRLILACTGRVVVSGMGKSGHVGSKIAATLASTGTPAFFM
HPGEASHGDLGMIAHDDVVLALSNSGESSEIVCIVPLIKRRGAKLVAMTGNPASTLAREADAHLNAKVDKEACPLNLAPT
ASTTAALALGDALAVALLDARGFSADDFARTHPGGSLGRRLLVHVADVMHGGDALPKVGRDATLKAALFEMTKKGLGMTA
VVDADDRVVGLFTDGDLRRTLEHALDIQHAKIADLMTPNPKTIRADELAAAAVEKMETLKINGLLVVDADNRLVGALNMH
DLLKAGVV

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=313, Percent_Identity=54.3130990415335, Blast_Score=347, Evalue=7e-97,
Organism=Escherichia coli, GI87082151, Length=321, Percent_Identity=46.7289719626168, Blast_Score=278, Evalue=5e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 34148; Mature: 34148

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00758 ARGE_DAPE_CPG2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVQSLSAEHSLALARQVLEIEADALHTVSTRLDHGFADAVRLILACTGRVVVSGMGKSG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCCC
HVGSKIAATLASTGTPAFFMHPGEASHGDLGMIAHDDVVLALSNSGESSEIVCIVPLIKR
CCCHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEECCEEEEEECCCCCCEEEEEEEHHHH
RGAKLVAMTGNPASTLAREADAHLNAKVDKEACPLNLAPTASTTAALALGDALAVALLDA
CCCEEEEEECCCHHHHHHHHCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
RGFSADDFARTHPGGSLGRRLLVHVADVMHGGDALPKVGRDATLKAALFEMTKKGLGMTA
CCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
VVDADDRVVGLFTDGDLRRTLEHALDIQHAKIADLMTPNPKTIRADELAAAAVEKMETLK
EEECCCCEEEEEECCHHHHHHHHHHCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHHHEEE
INGLLVVDADNRLVGALNMHDLLKAGVV
ECCEEEEECCCCEEEECCHHHHHHHCCC
>Mature Secondary Structure
MQVQSLSAEHSLALARQVLEIEADALHTVSTRLDHGFADAVRLILACTGRVVVSGMGKSG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCCC
HVGSKIAATLASTGTPAFFMHPGEASHGDLGMIAHDDVVLALSNSGESSEIVCIVPLIKR
CCCHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEECCEEEEEECCCCCCEEEEEEEHHHH
RGAKLVAMTGNPASTLAREADAHLNAKVDKEACPLNLAPTASTTAALALGDALAVALLDA
CCCEEEEEECCCHHHHHHHHCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
RGFSADDFARTHPGGSLGRRLLVHVADVMHGGDALPKVGRDATLKAALFEMTKKGLGMTA
CCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
VVDADDRVVGLFTDGDLRRTLEHALDIQHAKIADLMTPNPKTIRADELAAAAVEKMETLK
EEECCCCEEEEEECCHHHHHHHHHHCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHHHEEE
INGLLVVDADNRLVGALNMHDLLKAGVV
ECCEEEEECCCCEEEECCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]