| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74316543
Identifier: 74316543
GI number: 74316543
Start: 552907
End: 553491
Strand: Reverse
Name: 74316543
Synonym: Tbd_0525
Alternate gene names: NA
Gene position: 553491-552907 (Counterclockwise)
Preceding gene: 74316544
Following gene: 74316542
Centisome position: 19.02
GC content: 65.81
Gene sequence:
>585_bases GTGGCGCAAGCAGGGCTGCCTCTGTTTCCGCTCAACACCCTGGTCTTTCCGGGCGGGCGGCTGCCGCTGCGGGTGTTCGA GCAGCGCTATATCGACATGGTCAAGCGCGCGATCGCGGAGGACTCTGTCTTCGGCATCTGCGCGATCCGAGAGGGGCGGG AAACCGGAACGCCTGCCGTGCCCTACCCGGTCGGCACGGTCGTGCGGATCACCGAGTGGGACATGCCCGAGGCCGGCATT TTCCATATCGAGACGCAGGCCGCACACCGTTTCGTCATCCGCCGCAGCGCCGTCGAGCCGGATGGGCTGCTCGTGGCGAG CGTCGAGGACGTGAGTGCCGAGCCGCCCACCGCGGTTCCCGACGAGCTCGGCCTGGCGGTTGAAATCCTGCGCCACATCG TGGATGAGTACGGCGACGCACGCTTCCCTGCGCCGCACGCCTACGACGACGCGGTCTGGGTCAGCTACCGGCTGTCGGAG GTCCTTCCGCTGAAACTCAGCGTGAAGCAGAACCTGCTCGAAATGAACGACAGCGTCACGCGCCTGCGCATCCTCAACGA GTTTCTCAAGCGGCAGATCAACTGA
Upstream 100 bases:
>100_bases TCGAGGACGTCGTCGACTTCATCGTCGCGCGCATCCTCGACCAGCTCGACATCGCGCACGCCTTGATCCCGCGCTGGGCC GAAGAGGGGTGAGCGGCCGG
Downstream 100 bases:
>100_bases TGGCACGTTTCTATCCCGCACTCGAGGCCCGACACCGCGCCTTCATCGCCGCCCAGAAGGTCTTTTTCACTGCGAGCGGC ACGGCCGATGGCCGCCTCAA
Product: peptidase S16
Products: NA
Alternate protein names: ATP-Dependent Protease La; ATP-Dependent Protease La Domain Protein; Endopeptidase; ATP-Dependent Protease La Domain-Containing Protein; Protease; ATP-Dependent Endopeptidase Lon; Peptidase S
Number of amino acids: Translated: 194; Mature: 193
Protein sequence:
>194_residues MAQAGLPLFPLNTLVFPGGRLPLRVFEQRYIDMVKRAIAEDSVFGICAIREGRETGTPAVPYPVGTVVRITEWDMPEAGI FHIETQAAHRFVIRRSAVEPDGLLVASVEDVSAEPPTAVPDELGLAVEILRHIVDEYGDARFPAPHAYDDAVWVSYRLSE VLPLKLSVKQNLLEMNDSVTRLRILNEFLKRQIN
Sequences:
>Translated_194_residues MAQAGLPLFPLNTLVFPGGRLPLRVFEQRYIDMVKRAIAEDSVFGICAIREGRETGTPAVPYPVGTVVRITEWDMPEAGI FHIETQAAHRFVIRRSAVEPDGLLVASVEDVSAEPPTAVPDELGLAVEILRHIVDEYGDARFPAPHAYDDAVWVSYRLSE VLPLKLSVKQNLLEMNDSVTRLRILNEFLKRQIN >Mature_193_residues AQAGLPLFPLNTLVFPGGRLPLRVFEQRYIDMVKRAIAEDSVFGICAIREGRETGTPAVPYPVGTVVRITEWDMPEAGIF HIETQAAHRFVIRRSAVEPDGLLVASVEDVSAEPPTAVPDELGLAVEILRHIVDEYGDARFPAPHAYDDAVWVSYRLSEV LPLKLSVKQNLLEMNDSVTRLRILNEFLKRQIN
Specific function: Unknown
COG id: COG2802
COG function: function code R; Uncharacterized protein, similar to the N-terminal domain of Lon protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21687; Mature: 21556
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQAGLPLFPLNTLVFPGGRLPLRVFEQRYIDMVKRAIAEDSVFGICAIREGRETGTPAV CCCCCCCCCCCHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCC PYPVGTVVRITEWDMPEAGIFHIETQAAHRFVIRRSAVEPDGLLVASVEDVSAEPPTAVP CCCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCC DELGLAVEILRHIVDEYGDARFPAPHAYDDAVWVSYRLSEVLPLKLSVKQNLLEMNDSVT HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHCCCHHHHHHHHHHHCCHHH RLRILNEFLKRQIN HHHHHHHHHHHHCC >Mature Secondary Structure AQAGLPLFPLNTLVFPGGRLPLRVFEQRYIDMVKRAIAEDSVFGICAIREGRETGTPAV CCCCCCCCCCHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCC PYPVGTVVRITEWDMPEAGIFHIETQAAHRFVIRRSAVEPDGLLVASVEDVSAEPPTAVP CCCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCC DELGLAVEILRHIVDEYGDARFPAPHAYDDAVWVSYRLSEVLPLKLSVKQNLLEMNDSVT HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHCCCHHHHHHHHHHHCCHHH RLRILNEFLKRQIN HHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA