Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

Click here to switch to the map view.

The map label for this gene is 74316543

Identifier: 74316543

GI number: 74316543

Start: 552907

End: 553491

Strand: Reverse

Name: 74316543

Synonym: Tbd_0525

Alternate gene names: NA

Gene position: 553491-552907 (Counterclockwise)

Preceding gene: 74316544

Following gene: 74316542

Centisome position: 19.02

GC content: 65.81

Gene sequence:

>585_bases
GTGGCGCAAGCAGGGCTGCCTCTGTTTCCGCTCAACACCCTGGTCTTTCCGGGCGGGCGGCTGCCGCTGCGGGTGTTCGA
GCAGCGCTATATCGACATGGTCAAGCGCGCGATCGCGGAGGACTCTGTCTTCGGCATCTGCGCGATCCGAGAGGGGCGGG
AAACCGGAACGCCTGCCGTGCCCTACCCGGTCGGCACGGTCGTGCGGATCACCGAGTGGGACATGCCCGAGGCCGGCATT
TTCCATATCGAGACGCAGGCCGCACACCGTTTCGTCATCCGCCGCAGCGCCGTCGAGCCGGATGGGCTGCTCGTGGCGAG
CGTCGAGGACGTGAGTGCCGAGCCGCCCACCGCGGTTCCCGACGAGCTCGGCCTGGCGGTTGAAATCCTGCGCCACATCG
TGGATGAGTACGGCGACGCACGCTTCCCTGCGCCGCACGCCTACGACGACGCGGTCTGGGTCAGCTACCGGCTGTCGGAG
GTCCTTCCGCTGAAACTCAGCGTGAAGCAGAACCTGCTCGAAATGAACGACAGCGTCACGCGCCTGCGCATCCTCAACGA
GTTTCTCAAGCGGCAGATCAACTGA

Upstream 100 bases:

>100_bases
TCGAGGACGTCGTCGACTTCATCGTCGCGCGCATCCTCGACCAGCTCGACATCGCGCACGCCTTGATCCCGCGCTGGGCC
GAAGAGGGGTGAGCGGCCGG

Downstream 100 bases:

>100_bases
TGGCACGTTTCTATCCCGCACTCGAGGCCCGACACCGCGCCTTCATCGCCGCCCAGAAGGTCTTTTTCACTGCGAGCGGC
ACGGCCGATGGCCGCCTCAA

Product: peptidase S16

Products: NA

Alternate protein names: ATP-Dependent Protease La; ATP-Dependent Protease La Domain Protein; Endopeptidase; ATP-Dependent Protease La Domain-Containing Protein; Protease; ATP-Dependent Endopeptidase Lon; Peptidase S

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MAQAGLPLFPLNTLVFPGGRLPLRVFEQRYIDMVKRAIAEDSVFGICAIREGRETGTPAVPYPVGTVVRITEWDMPEAGI
FHIETQAAHRFVIRRSAVEPDGLLVASVEDVSAEPPTAVPDELGLAVEILRHIVDEYGDARFPAPHAYDDAVWVSYRLSE
VLPLKLSVKQNLLEMNDSVTRLRILNEFLKRQIN

Sequences:

>Translated_194_residues
MAQAGLPLFPLNTLVFPGGRLPLRVFEQRYIDMVKRAIAEDSVFGICAIREGRETGTPAVPYPVGTVVRITEWDMPEAGI
FHIETQAAHRFVIRRSAVEPDGLLVASVEDVSAEPPTAVPDELGLAVEILRHIVDEYGDARFPAPHAYDDAVWVSYRLSE
VLPLKLSVKQNLLEMNDSVTRLRILNEFLKRQIN
>Mature_193_residues
AQAGLPLFPLNTLVFPGGRLPLRVFEQRYIDMVKRAIAEDSVFGICAIREGRETGTPAVPYPVGTVVRITEWDMPEAGIF
HIETQAAHRFVIRRSAVEPDGLLVASVEDVSAEPPTAVPDELGLAVEILRHIVDEYGDARFPAPHAYDDAVWVSYRLSEV
LPLKLSVKQNLLEMNDSVTRLRILNEFLKRQIN

Specific function: Unknown

COG id: COG2802

COG function: function code R; Uncharacterized protein, similar to the N-terminal domain of Lon protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21687; Mature: 21556

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQAGLPLFPLNTLVFPGGRLPLRVFEQRYIDMVKRAIAEDSVFGICAIREGRETGTPAV
CCCCCCCCCCCHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCC
PYPVGTVVRITEWDMPEAGIFHIETQAAHRFVIRRSAVEPDGLLVASVEDVSAEPPTAVP
CCCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCC
DELGLAVEILRHIVDEYGDARFPAPHAYDDAVWVSYRLSEVLPLKLSVKQNLLEMNDSVT
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHCCCHHHHHHHHHHHCCHHH
RLRILNEFLKRQIN
HHHHHHHHHHHHCC
>Mature Secondary Structure 
AQAGLPLFPLNTLVFPGGRLPLRVFEQRYIDMVKRAIAEDSVFGICAIREGRETGTPAV
CCCCCCCCCCHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCC
PYPVGTVVRITEWDMPEAGIFHIETQAAHRFVIRRSAVEPDGLLVASVEDVSAEPPTAVP
CCCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCC
DELGLAVEILRHIVDEYGDARFPAPHAYDDAVWVSYRLSEVLPLKLSVKQNLLEMNDSVT
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHCCCHHHHHHHHHHHCCHHH
RLRILNEFLKRQIN
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA