| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74316542
Identifier: 74316542
GI number: 74316542
Start: 552344
End: 552907
Strand: Reverse
Name: 74316542
Synonym: Tbd_0524
Alternate gene names: NA
Gene position: 552907-552344 (Counterclockwise)
Preceding gene: 74316543
Following gene: 74316541
Centisome position: 19.0
GC content: 68.26
Gene sequence:
>564_bases ATGGCACGTTTCTATCCCGCACTCGAGGCCCGACACCGCGCCTTCATCGCCGCCCAGAAGGTCTTTTTCACTGCGAGCGG CACGGCCGATGGCCGCCTCAACCTCTCGCCCAAGGGCATGGACAGCGTGCGCGTGCTGTCCGACGTGCGCGTCGCCTACC TCGATCTCACCGGCAGCGGCAACGAAACCGCGGCCCACCTCAGGCACGACGGCCGACTCACGATGATGTGGTGCAGCTTC GACGCCGATCCGCTGATCCTGCGCGCCTACGGCCGCGGCCGCGTCGTGCGTCGCCAGGACGCAGAGTGGGCCGCGCTTCG TCACCACTTCGCCGACCTGCCCGGCGAGCGGCAAATCATCGTGCTCGACATCGACTCGGTGCAGACCTCGTGCGGCTACG CGGTGCCGCGCTACCGCTACCTCGGCGAGCGCGAAACCCTTGCGCGCTGGGTCGAAAAGAAAGGGCCGGTCGGCCTTGTC GAGTACTGGCGGGAGAAAAACCAGGTCAGCGTCGACGGCCTGCCGACGGGCCTGCTCGACGACGCGGCCCCCGATCCGTC CTGA
Upstream 100 bases:
>100_bases TTCCGCTGAAACTCAGCGTGAAGCAGAACCTGCTCGAAATGAACGACAGCGTCACGCGCCTGCGCATCCTCAACGAGTTT CTCAAGCGGCAGATCAACTG
Downstream 100 bases:
>100_bases TCGGGCGCCCTCGAGCAATACGCCCGGCGGCGGATAGAGGTCGGCTCCGCACGAATGCTCGGAGCGCGCCCCCCGGGGCG TCAAGTCGGAATTGTCTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: Pyridoxamine 5-Phosphate Oxidase Family Protein; Pyridoxamine 5-Phosphate Oxidase-Like Protein; Signal Transduction Histidine Kinase; Pyridoxamine-Phosphate Oxidase; Pyridoxamine 5-Phosphate Oxidase Family
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MARFYPALEARHRAFIAAQKVFFTASGTADGRLNLSPKGMDSVRVLSDVRVAYLDLTGSGNETAAHLRHDGRLTMMWCSF DADPLILRAYGRGRVVRRQDAEWAALRHHFADLPGERQIIVLDIDSVQTSCGYAVPRYRYLGERETLARWVEKKGPVGLV EYWREKNQVSVDGLPTGLLDDAAPDPS
Sequences:
>Translated_187_residues MARFYPALEARHRAFIAAQKVFFTASGTADGRLNLSPKGMDSVRVLSDVRVAYLDLTGSGNETAAHLRHDGRLTMMWCSF DADPLILRAYGRGRVVRRQDAEWAALRHHFADLPGERQIIVLDIDSVQTSCGYAVPRYRYLGERETLARWVEKKGPVGLV EYWREKNQVSVDGLPTGLLDDAAPDPS >Mature_186_residues ARFYPALEARHRAFIAAQKVFFTASGTADGRLNLSPKGMDSVRVLSDVRVAYLDLTGSGNETAAHLRHDGRLTMMWCSFD ADPLILRAYGRGRVVRRQDAEWAALRHHFADLPGERQIIVLDIDSVQTSCGYAVPRYRYLGERETLARWVEKKGPVGLVE YWREKNQVSVDGLPTGLLDDAAPDPS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20946; Mature: 20815
Theoretical pI: Translated: 8.22; Mature: 8.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARFYPALEARHRAFIAAQKVFFTASGTADGRLNLSPKGMDSVRVLSDVRVAYLDLTGSG CCCCCCHHHHHHHHHHEEEEEEEEECCCCCCEEECCCCCCCHHHHHHCCEEEEEEEECCC NETAAHLRHDGRLTMMWCSFDADPLILRAYGRGRVVRRQDAEWAALRHHFADLPGERQII CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEECCCHHHHHHHHHHCCCCCCEEE VLDIDSVQTSCGYAVPRYRYLGERETLARWVEKKGPVGLVEYWREKNQVSVDGLPTGLLD EEECCCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEECCCCCCCCC DAAPDPS CCCCCCC >Mature Secondary Structure ARFYPALEARHRAFIAAQKVFFTASGTADGRLNLSPKGMDSVRVLSDVRVAYLDLTGSG CCCCCHHHHHHHHHHEEEEEEEEECCCCCCEEECCCCCCCHHHHHHCCEEEEEEEECCC NETAAHLRHDGRLTMMWCSFDADPLILRAYGRGRVVRRQDAEWAALRHHFADLPGERQII CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEECCCHHHHHHHHHHCCCCCCEEE VLDIDSVQTSCGYAVPRYRYLGERETLARWVEKKGPVGLVEYWREKNQVSVDGLPTGLLD EEECCCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEECCCCCCCCC DAAPDPS CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA