| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is yqeZ [H]
Identifier: 74316509
GI number: 74316509
Start: 510065
End: 511405
Strand: Reverse
Name: yqeZ [H]
Synonym: Tbd_0491
Alternate gene names: 74316509
Gene position: 511405-510065 (Counterclockwise)
Preceding gene: 74316510
Following gene: 74316508
Centisome position: 17.58
GC content: 69.28
Gene sequence:
>1341_bases ATGGCGCATCCCTTCCGAATCCTGCTGGGTCTGGCCCTGCTGTTCGTGCTCGGCGCGCCTGCCGCGGCCGCGACCGTTCG CGTCCTCACCATACAGGGCGCGATCGGCCCGGCGAGCGCCGATTACCTGCTGCGCGGAATCGACAAGGCGATCAAGGACA GCGCCCAGCTCGTCGTAATCGAGATGGACACCCCGGGCGGCCTCGACACCTCGATGCGCGACATCATCAAGGCCATCCTC GCCTCGCCGGTCCCGGTTGCGACCTACGTCTCGCCACGCGGCGCGCGTGCCGCGAGTGCCGGCACCTACATCCTCTACGC GAGCCACATCGCCGCGATGGCGCCGGCGACGAATCTCGGCGCGGCGACCCCGGTCGAACTCGCTCCTGGCGGCAGCGACA AGCCCGCGCAGCCGGCCGGCGACCAAGCCCGCGAGCCGCCCGGTGACCCGAAAATGCGCAAGGCCGTGCACGACGCCGCC GCCTATATCCGCGGCCTCGCCGAGCTGCGCGGACGCAATGCCGAGTGGGCCGAACGCGCGGTGCGCGAGGCCGTGAGCCT GTCGGCGCCCGAAGCGCTCGAACTCAAGGTCGTCGATCTGATCGCGGCCAGCATCGAGGATCTGTTGCGCCAGATCGACG GCCGCGTCGTCAGAACCGCGACCGGCGAGGTGACGCTCGCGACGGCCGACGCGCAGGTCGAGCCGGTGGTGCCGGACTGG CGCAGCCGCCTGCTTGCCGTGATTGGCGATCCGAGCATCGCCTACATCCTGATGCTGCTCGGCATCTACGGTCTGATCTA CGAGTTCTCCAACCCCGGCATGTTCTTCCCGGGCGTGGTCGGCGGCATCTGCCTGCTGCTCGCGCTGTTCGCGCTGCAGG TCATGCCGATCAGCTACGCCGGACTCGCGCTGATGGTGCTCGGCATCGTGCTGATGATCTCCGAGGCCTTCATCCCGAGC TTCGGCGCGCTCGGCCTCGGCGGCATCGTCGCCTTCACGATCGGCTCGGTCATGCTGATCGACACCGAGGCGCCGGGCTA CGGCATTCCGTGGATGCTCGTCGTGCCGGTGGCGTTGGCGAGCGCGCTGTTCAGCTTCTTCGCCGTCGGCATGGCGCTGA AGGCCCGCAGCCGCCCCGTCGTGACCGGCGCCGAGGAAATGCTCGGCGCGCGCGGAGAGGTCATCGACGACATGGCCGGC GAAGGCTGGGCCCGCATACACGGCGAACAATGGCGGGTGCGCAGCGGCACGCCGCTGAAACGGGGCGATCGCGTGCGCGT GCGCGCCCGCCACGACCTGATCCTCGAAGTGGAACCGGACAAGGAGAACGACCATGTTTGA
Upstream 100 bases:
>100_bases GCTCGCTCCGCCGCCGGACCCTGAGCGCCCGCCCCGCGACCCGGAGTAAGCCCCGGCCGCCCGATTGGACCGCGGGGATT CGGGCGTCTAGATTGAGGGG
Downstream 100 bases:
>100_bases ATTTGGCGGCTTGACTGTCGTGTTCGCGCTCATCGCGCTTCTGGTCGCGAGCGTGCGCATCCTGCGCGAGTACGAACGCG GCGTCGTGTTCATGCTCGGC
Product: transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 446; Mature: 445
Protein sequence:
>446_residues MAHPFRILLGLALLFVLGAPAAAATVRVLTIQGAIGPASADYLLRGIDKAIKDSAQLVVIEMDTPGGLDTSMRDIIKAIL ASPVPVATYVSPRGARAASAGTYILYASHIAAMAPATNLGAATPVELAPGGSDKPAQPAGDQAREPPGDPKMRKAVHDAA AYIRGLAELRGRNAEWAERAVREAVSLSAPEALELKVVDLIAASIEDLLRQIDGRVVRTATGEVTLATADAQVEPVVPDW RSRLLAVIGDPSIAYILMLLGIYGLIYEFSNPGMFFPGVVGGICLLLALFALQVMPISYAGLALMVLGIVLMISEAFIPS FGALGLGGIVAFTIGSVMLIDTEAPGYGIPWMLVVPVALASALFSFFAVGMALKARSRPVVTGAEEMLGARGEVIDDMAG EGWARIHGEQWRVRSGTPLKRGDRVRVRARHDLILEVEPDKENDHV
Sequences:
>Translated_446_residues MAHPFRILLGLALLFVLGAPAAAATVRVLTIQGAIGPASADYLLRGIDKAIKDSAQLVVIEMDTPGGLDTSMRDIIKAIL ASPVPVATYVSPRGARAASAGTYILYASHIAAMAPATNLGAATPVELAPGGSDKPAQPAGDQAREPPGDPKMRKAVHDAA AYIRGLAELRGRNAEWAERAVREAVSLSAPEALELKVVDLIAASIEDLLRQIDGRVVRTATGEVTLATADAQVEPVVPDW RSRLLAVIGDPSIAYILMLLGIYGLIYEFSNPGMFFPGVVGGICLLLALFALQVMPISYAGLALMVLGIVLMISEAFIPS FGALGLGGIVAFTIGSVMLIDTEAPGYGIPWMLVVPVALASALFSFFAVGMALKARSRPVVTGAEEMLGARGEVIDDMAG EGWARIHGEQWRVRSGTPLKRGDRVRVRARHDLILEVEPDKENDHV >Mature_445_residues AHPFRILLGLALLFVLGAPAAAATVRVLTIQGAIGPASADYLLRGIDKAIKDSAQLVVIEMDTPGGLDTSMRDIIKAILA SPVPVATYVSPRGARAASAGTYILYASHIAAMAPATNLGAATPVELAPGGSDKPAQPAGDQAREPPGDPKMRKAVHDAAA YIRGLAELRGRNAEWAERAVREAVSLSAPEALELKVVDLIAASIEDLLRQIDGRVVRTATGEVTLATADAQVEPVVPDWR SRLLAVIGDPSIAYILMLLGIYGLIYEFSNPGMFFPGVVGGICLLLALFALQVMPISYAGLALMVLGIVLMISEAFIPSF GALGLGGIVAFTIGSVMLIDTEAPGYGIPWMLVVPVALASALFSFFAVGMALKARSRPVVTGAEEMLGARGEVIDDMAGE GWARIHGEQWRVRSGTPLKRGDRVRVRARHDLILEVEPDKENDHV
Specific function: Unknown
COG id: COG1030
COG function: function code O; Membrane-bound serine protease (ClpP class)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002810 - InterPro: IPR002825 [H]
Pfam domain/function: PF01972 DUF114; PF01957 NfeD [H]
EC number: NA
Molecular weight: Translated: 47032; Mature: 46900
Theoretical pI: Translated: 5.48; Mature: 5.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHPFRILLGLALLFVLGAPAAAATVRVLTIQGAIGPASADYLLRGIDKAIKDSAQLVVI CCCHHHHHHHHHHHHHHCCCHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE EMDTPGGLDTSMRDIIKAILASPVPVATYVSPRGARAASAGTYILYASHIAAMAPATNLG EECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEHHHHHHHCCCCCCC AATPVELAPGGSDKPAQPAGDQAREPPGDPKMRKAVHDAAAYIRGLAELRGRNAEWAERA CCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH VREAVSLSAPEALELKVVDLIAASIEDLLRQIDGRVVRTATGEVTLATADAQVEPVVPDW HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCCCCCHHH RSRLLAVIGDPSIAYILMLLGIYGLIYEFSNPGMFFPGVVGGICLLLALFALQVMPISYA HHHEEHHCCCCHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHCCCHH GLALMVLGIVLMISEAFIPSFGALGLGGIVAFTIGSVMLIDTEAPGYGIPWMLVVPVALA HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHH SALFSFFAVGMALKARSRPVVTGAEEMLGARGEVIDDMAGEGWARIHGEQWRVRSGTPLK HHHHHHHHHHHHHHCCCCCCEECHHHHHCCCCCHHHHHCCCCEEEECCCCEEECCCCCCC RGDRVRVRARHDLILEVEPDKENDHV CCCEEEEEEECCEEEEECCCCCCCCC >Mature Secondary Structure AHPFRILLGLALLFVLGAPAAAATVRVLTIQGAIGPASADYLLRGIDKAIKDSAQLVVI CCHHHHHHHHHHHHHHCCCHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE EMDTPGGLDTSMRDIIKAILASPVPVATYVSPRGARAASAGTYILYASHIAAMAPATNLG EECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEHHHHHHHCCCCCCC AATPVELAPGGSDKPAQPAGDQAREPPGDPKMRKAVHDAAAYIRGLAELRGRNAEWAERA CCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH VREAVSLSAPEALELKVVDLIAASIEDLLRQIDGRVVRTATGEVTLATADAQVEPVVPDW HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCCCCCHHH RSRLLAVIGDPSIAYILMLLGIYGLIYEFSNPGMFFPGVVGGICLLLALFALQVMPISYA HHHEEHHCCCCHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHCCCHH GLALMVLGIVLMISEAFIPSFGALGLGGIVAFTIGSVMLIDTEAPGYGIPWMLVVPVALA HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHH SALFSFFAVGMALKARSRPVVTGAEEMLGARGEVIDDMAGEGWARIHGEQWRVRSGTPLK HHHHHHHHHHHHHHCCCCCCEECHHHHHCCCCCHHHHHCCCCEEEECCCCEEECCCCCCC RGDRVRVRARHDLILEVEPDKENDHV CCCEEEEEEECCEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]