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The map label for this gene is ybbK [C]

Identifier: 74316508

GI number: 74316508

Start: 509314

End: 510072

Strand: Reverse

Name: ybbK [C]

Synonym: Tbd_0490

Alternate gene names: 74316508

Gene position: 510072-509314 (Counterclockwise)

Preceding gene: 74316509

Following gene: 74316507

Centisome position: 17.53

GC content: 64.82

Gene sequence:

>759_bases
ATGTTTGAATTTGGCGGCTTGACTGTCGTGTTCGCGCTCATCGCGCTTCTGGTCGCGAGCGTGCGCATCCTGCGCGAGTA
CGAACGCGGCGTCGTGTTCATGCTCGGCCGCTTCTGGAAGGTGAAGGGCCCGGGCCTCGTCATCGTCATTCCGGGCCTGC
AGCAGATGGTGCGCGTCGACCTGCGCACCGTGGTCTTCGACGTGCCCAGCCAGGACGTGATCTCGCGCGACAACGTTTCG
GTCAAGGTCAACGCCGTCGTGTACTTCCGCGTCATGGACCCGGCGAAGGCCATCCTGCAGGTCGAGGACTTTCTGGTCGC
GACGAGCCAGCTTGCGCAGACGACGCTGCGCGCGGTGCTGGGCAAGCACGAACTCGACGACATGCTCGCCGAGCGCGAGC
GGCTCAACCAGGATGTACAGCAGATCCTCGACGCGCAAACCGACGCTTGGGGAATCAAGGTGTCGAACGTCGAGATCAAG
CACGTCGACATCGACGAATCGATGGTGCGCGCGATCGCGCGGCAGGCCGAGGCCGAGCGCGAGCGGCGCGCCAAGGTGAT
CCATGCCGAAGGCGAGCTGCAGGCCTCGGAAAAACTGCTCGCCGCGGCCGAAGTGCTCGCCGGCCGACCCCAGGCGATGC
AGCTGCGCTATCTGCAGACCCTCTCCAGCATCGCGGGCGACCGTTCCAACACGATCGTCTTCCCGATGCCGGGCGAGCTC
ATGAACCTGATGATGCGACCCAGCCCGGCCGACAAATAG

Upstream 100 bases:

>100_bases
CGGGTGCGCAGCGGCACGCCGCTGAAACGGGGCGATCGCGTGCGCGTGCGCGCCCGCCACGACCTGATCCTCGAAGTGGA
ACCGGACAAGGAGAACGACC

Downstream 100 bases:

>100_bases
CCGAATGCTAGACCGCGACGGCGGCAGGGTCTGCGCTGGCACGCTGGCTACCGTCACGGTATGCTCGCGGCACGACGCAT
CGGGGAACCTGTGCCGCGCT

Product: SPFH domain-containing protein/band 7 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MFEFGGLTVVFALIALLVASVRILREYERGVVFMLGRFWKVKGPGLVIVIPGLQQMVRVDLRTVVFDVPSQDVISRDNVS
VKVNAVVYFRVMDPAKAILQVEDFLVATSQLAQTTLRAVLGKHELDDMLAERERLNQDVQQILDAQTDAWGIKVSNVEIK
HVDIDESMVRAIARQAEAERERRAKVIHAEGELQASEKLLAAAEVLAGRPQAMQLRYLQTLSSIAGDRSNTIVFPMPGEL
MNLMMRPSPADK

Sequences:

>Translated_252_residues
MFEFGGLTVVFALIALLVASVRILREYERGVVFMLGRFWKVKGPGLVIVIPGLQQMVRVDLRTVVFDVPSQDVISRDNVS
VKVNAVVYFRVMDPAKAILQVEDFLVATSQLAQTTLRAVLGKHELDDMLAERERLNQDVQQILDAQTDAWGIKVSNVEIK
HVDIDESMVRAIARQAEAERERRAKVIHAEGELQASEKLLAAAEVLAGRPQAMQLRYLQTLSSIAGDRSNTIVFPMPGEL
MNLMMRPSPADK
>Mature_252_residues
MFEFGGLTVVFALIALLVASVRILREYERGVVFMLGRFWKVKGPGLVIVIPGLQQMVRVDLRTVVFDVPSQDVISRDNVS
VKVNAVVYFRVMDPAKAILQVEDFLVATSQLAQTTLRAVLGKHELDDMLAERERLNQDVQQILDAQTDAWGIKVSNVEIK
HVDIDESMVRAIARQAEAERERRAKVIHAEGELQASEKLLAAAEVLAGRPQAMQLRYLQTLSSIAGDRSNTIVFPMPGEL
MNLMMRPSPADK

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI221316744, Length=246, Percent_Identity=46.7479674796748, Blast_Score=204, Evalue=4e-53,
Organism=Homo sapiens, GI21686995, Length=246, Percent_Identity=46.7479674796748, Blast_Score=204, Evalue=5e-53,
Organism=Homo sapiens, GI38016911, Length=241, Percent_Identity=43.9834024896266, Blast_Score=195, Evalue=3e-50,
Organism=Homo sapiens, GI7657615, Length=231, Percent_Identity=36.3636363636364, Blast_Score=157, Evalue=7e-39,
Organism=Homo sapiens, GI7305503, Length=188, Percent_Identity=38.8297872340425, Blast_Score=129, Evalue=2e-30,
Organism=Homo sapiens, GI20149563, Length=161, Percent_Identity=33.5403726708075, Blast_Score=95, Evalue=7e-20,
Organism=Escherichia coli, GI1786697, Length=188, Percent_Identity=35.6382978723404, Blast_Score=130, Evalue=7e-32,
Organism=Caenorhabditis elegans, GI17569497, Length=253, Percent_Identity=42.6877470355731, Blast_Score=208, Evalue=3e-54,
Organism=Caenorhabditis elegans, GI17569493, Length=224, Percent_Identity=45.9821428571429, Blast_Score=207, Evalue=5e-54,
Organism=Caenorhabditis elegans, GI193209764, Length=231, Percent_Identity=45.021645021645, Blast_Score=207, Evalue=6e-54,
Organism=Caenorhabditis elegans, GI71987612, Length=245, Percent_Identity=44.8979591836735, Blast_Score=198, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI71987621, Length=245, Percent_Identity=44.8979591836735, Blast_Score=198, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI25153583, Length=245, Percent_Identity=44.8979591836735, Blast_Score=198, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI17569499, Length=246, Percent_Identity=44.7154471544715, Blast_Score=197, Evalue=4e-51,
Organism=Caenorhabditis elegans, GI193210507, Length=232, Percent_Identity=45.2586206896552, Blast_Score=194, Evalue=5e-50,
Organism=Caenorhabditis elegans, GI17570161, Length=232, Percent_Identity=45.2586206896552, Blast_Score=193, Evalue=6e-50,
Organism=Caenorhabditis elegans, GI71989948, Length=233, Percent_Identity=46.3519313304721, Blast_Score=191, Evalue=3e-49,
Organism=Caenorhabditis elegans, GI17570459, Length=245, Percent_Identity=42.8571428571429, Blast_Score=191, Evalue=4e-49,
Organism=Caenorhabditis elegans, GI32566490, Length=228, Percent_Identity=45.1754385964912, Blast_Score=172, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI71989955, Length=184, Percent_Identity=46.7391304347826, Blast_Score=149, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI71989963, Length=120, Percent_Identity=49.1666666666667, Blast_Score=118, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI32564147, Length=175, Percent_Identity=34.8571428571429, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17542664, Length=166, Percent_Identity=28.3132530120482, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI45556022, Length=247, Percent_Identity=47.7732793522267, Blast_Score=212, Evalue=2e-55,
Organism=Drosophila melanogaster, GI18860517, Length=235, Percent_Identity=45.531914893617, Blast_Score=205, Evalue=3e-53,
Organism=Drosophila melanogaster, GI62484448, Length=244, Percent_Identity=45.9016393442623, Blast_Score=193, Evalue=7e-50,
Organism=Drosophila melanogaster, GI24657857, Length=240, Percent_Identity=46.25, Blast_Score=193, Evalue=7e-50,
Organism=Drosophila melanogaster, GI62484274, Length=244, Percent_Identity=45.9016393442623, Blast_Score=193, Evalue=1e-49,
Organism=Drosophila melanogaster, GI281365664, Length=244, Percent_Identity=45.9016393442623, Blast_Score=193, Evalue=1e-49,
Organism=Drosophila melanogaster, GI28573263, Length=248, Percent_Identity=39.5161290322581, Blast_Score=192, Evalue=2e-49,
Organism=Drosophila melanogaster, GI281361633, Length=240, Percent_Identity=40.4166666666667, Blast_Score=186, Evalue=9e-48,
Organism=Drosophila melanogaster, GI281361631, Length=240, Percent_Identity=40.4166666666667, Blast_Score=186, Evalue=1e-47,
Organism=Drosophila melanogaster, GI21356845, Length=229, Percent_Identity=38.8646288209607, Blast_Score=180, Evalue=9e-46,
Organism=Drosophila melanogaster, GI281361635, Length=185, Percent_Identity=41.6216216216216, Blast_Score=149, Evalue=1e-36,
Organism=Drosophila melanogaster, GI45550506, Length=165, Percent_Identity=38.7878787878788, Blast_Score=122, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28122; Mature: 28122

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEFGGLTVVFALIALLVASVRILREYERGVVFMLGRFWKVKGPGLVIVIPGLQQMVRVD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHEEECCCCEEEEECCHHHHHHHH
LRTVVFDVPSQDVISRDNVSVKVNAVVYFRVMDPAKAILQVEDFLVATSQLAQTTLRAVL
HHHHEEECCCHHHHCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GKHELDDMLAERERLNQDVQQILDAQTDAWGIKVSNVEIKHVDIDESMVRAIARQAEAER
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECEEEEEECCCHHHHHHHHHHHHHHH
ERRAKVIHAEGELQASEKLLAAAEVLAGRPQAMQLRYLQTLSSIAGDRSNTIVFPMPGEL
HHHHHEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHH
MNLMMRPSPADK
HHHHCCCCCCCC
>Mature Secondary Structure
MFEFGGLTVVFALIALLVASVRILREYERGVVFMLGRFWKVKGPGLVIVIPGLQQMVRVD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHEEECCCCEEEEECCHHHHHHHH
LRTVVFDVPSQDVISRDNVSVKVNAVVYFRVMDPAKAILQVEDFLVATSQLAQTTLRAVL
HHHHEEECCCHHHHCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GKHELDDMLAERERLNQDVQQILDAQTDAWGIKVSNVEIKHVDIDESMVRAIARQAEAER
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECEEEEEECCCHHHHHHHHHHHHHHH
ERRAKVIHAEGELQASEKLLAAAEVLAGRPQAMQLRYLQTLSSIAGDRSNTIVFPMPGEL
HHHHHEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHH
MNLMMRPSPADK
HHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]