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The map label for this gene is yciR [C]

Identifier: 74316505

GI number: 74316505

Start: 506550

End: 507641

Strand: Direct

Name: yciR [C]

Synonym: Tbd_0487

Alternate gene names: 74316505

Gene position: 506550-507641 (Clockwise)

Preceding gene: 74316504

Following gene: 74316517

Centisome position: 17.41

GC content: 61.9

Gene sequence:

>1092_bases
ATGCACCCCGACCGTAACGCTGTCGATCTGGAATTGCAGCAGTGTCACATCCGGCTCTTCGTTCCGCTGCCGATCCTGTT
TGCGTGGTATCTGTTTTGGACGGTGAAGGGGCACCCGCAGGCGAGCAACGGGCTGGCGGTCGCCGGCGCGTTCCTGGTCT
TCGCATTCGTGCATTGGCTGCGTGTCAGGACGAACCCCGGGCCTTATCCCGGTCGCCAGTTCACGGCAATTGCGGTTGAT
CAGACGGCCTGCATGATTGGCATGATCCTCACGGGCGAACTCGGTGCAATCATCGCCTTCGTGAATCTGTGGATATCCCT
GGGGAATGGCATCCGCTTCGGGGTGAAATGGATGGCATTGTCGGCCTTGTTCGCGACGACGGGCCTGATTGCAGTGGGCC
TGCTGTCGGACTATTGGACGCAGCATCCGATCTGGATATTCAGCCTGCTATTGCTCAACGTCGCCATCCCCGCCTACGTC
GCGAGCCTGATCCGCGGATACCACGAAAGTCGGGCCCAGCTTGCGCGCTATGCGGGAGAGATGGAGGAGATTGCGCTGAC
CGACACGCTCACCGGTCTGCCCAACCGGGCGGCGTTTTTTTCCCAGTTGCAGAAGGCGGTTTCGCATGCCCAGCGTACGC
AGTCTTCCATTGCCCTTCTCTATTTCGACCTCGACGGCTTCAAGCAGGTGAACGACAGCCTCGGGCATGCGCACGGGGAC
AGCTTGTTGAAGCAGACGGCCCTGCGCGTCGGGCAGTGTTTGCGCGGAGAAGACGTGCTTGCCCGTCTCGGTGGCGACGA
ATTCGTCGTGCTGCTCAACGCCCAGGACAAGGAAAAGCGCGTGGAAAAGGTCGCGGCGCGGATTCTTCAGGCCGTCGCGT
CGATCGATCAGGTCGACGGCCACCGCGTCGAGGTCACGGCGTCGGCCGGGATCGTCCTCGTCAGCGGCGCGCACGCCGCC
GCACTCGGATCGGAAGGCATGATCCACGAGGCGGACAAGAACATGTACGCCGCGAAAAAAAAGGGCAAGAACCAGACCGT
CCTGTCGTCTTTTCCTGCCGAACTCCGCCTCGTCGCCGGCCTCGACCGCTGA

Upstream 100 bases:

>100_bases
GAAGGCGAAACAGCGACAGGATGCGGCGTCTCGCTGCGGCTCCTGACAAACTCCATCGCCGGCGTAGCCGGCTTTTTTTC
CGTCCGCGTCATTAGAAACC

Downstream 100 bases:

>100_bases
GGGCTTTTTTGAGCTGTTCAGGCCGCGGCCAGCGCCAATACCTCGCGCGCGTTCTGCGTCGTGACGCGCGCGACGGTTTC
GGTATCCACACCGCGTAACT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MHPDRNAVDLELQQCHIRLFVPLPILFAWYLFWTVKGHPQASNGLAVAGAFLVFAFVHWLRVRTNPGPYPGRQFTAIAVD
QTACMIGMILTGELGAIIAFVNLWISLGNGIRFGVKWMALSALFATTGLIAVGLLSDYWTQHPIWIFSLLLLNVAIPAYV
ASLIRGYHESRAQLARYAGEMEEIALTDTLTGLPNRAAFFSQLQKAVSHAQRTQSSIALLYFDLDGFKQVNDSLGHAHGD
SLLKQTALRVGQCLRGEDVLARLGGDEFVVLLNAQDKEKRVEKVAARILQAVASIDQVDGHRVEVTASAGIVLVSGAHAA
ALGSEGMIHEADKNMYAAKKKGKNQTVLSSFPAELRLVAGLDR

Sequences:

>Translated_363_residues
MHPDRNAVDLELQQCHIRLFVPLPILFAWYLFWTVKGHPQASNGLAVAGAFLVFAFVHWLRVRTNPGPYPGRQFTAIAVD
QTACMIGMILTGELGAIIAFVNLWISLGNGIRFGVKWMALSALFATTGLIAVGLLSDYWTQHPIWIFSLLLLNVAIPAYV
ASLIRGYHESRAQLARYAGEMEEIALTDTLTGLPNRAAFFSQLQKAVSHAQRTQSSIALLYFDLDGFKQVNDSLGHAHGD
SLLKQTALRVGQCLRGEDVLARLGGDEFVVLLNAQDKEKRVEKVAARILQAVASIDQVDGHRVEVTASAGIVLVSGAHAA
ALGSEGMIHEADKNMYAAKKKGKNQTVLSSFPAELRLVAGLDR
>Mature_363_residues
MHPDRNAVDLELQQCHIRLFVPLPILFAWYLFWTVKGHPQASNGLAVAGAFLVFAFVHWLRVRTNPGPYPGRQFTAIAVD
QTACMIGMILTGELGAIIAFVNLWISLGNGIRFGVKWMALSALFATTGLIAVGLLSDYWTQHPIWIFSLLLLNVAIPAYV
ASLIRGYHESRAQLARYAGEMEEIALTDTLTGLPNRAAFFSQLQKAVSHAQRTQSSIALLYFDLDGFKQVNDSLGHAHGD
SLLKQTALRVGQCLRGEDVLARLGGDEFVVLLNAQDKEKRVEKVAARILQAVASIDQVDGHRVEVTASAGIVLVSGAHAA
ALGSEGMIHEADKNMYAAKKKGKNQTVLSSFPAELRLVAGLDR

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=162, Percent_Identity=39.5061728395062, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787262, Length=257, Percent_Identity=29.5719844357977, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788381, Length=188, Percent_Identity=39.3617021276596, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=31.2883435582822, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788956, Length=187, Percent_Identity=34.2245989304813, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87081977, Length=175, Percent_Identity=36.5714285714286, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786584, Length=179, Percent_Identity=26.2569832402235, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI87082007, Length=162, Percent_Identity=32.0987654320988, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787816, Length=168, Percent_Identity=30.952380952381, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI87081974, Length=165, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=29.0697674418605, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 39595; Mature: 39595

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPDRNAVDLELQQCHIRLFVPLPILFAWYLFWTVKGHPQASNGLAVAGAFLVFAFVHWL
CCCCCCCEEEEEEEEEEEEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
RVRTNPGPYPGRQFTAIAVDQTACMIGMILTGELGAIIAFVNLWISLGNGIRFGVKWMAL
HHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
SALFATTGLIAVGLLSDYWTQHPIWIFSLLLLNVAIPAYVASLIRGYHESRAQLARYAGE
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MEEIALTDTLTGLPNRAAFFSQLQKAVSHAQRTQSSIALLYFDLDGFKQVNDSLGHAHGD
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHCCCHHH
SLLKQTALRVGQCLRGEDVLARLGGDEFVVLLNAQDKEKRVEKVAARILQAVASIDQVDG
HHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
HRVEVTASAGIVLVSGAHAAALGSEGMIHEADKNMYAAKKKGKNQTVLSSFPAELRLVAG
CEEEEEECCCEEEEECCCHHHCCCCCCEECCCCCHHHHHHCCCCCHHHHHCCHHHHHHCC
LDR
CCC
>Mature Secondary Structure
MHPDRNAVDLELQQCHIRLFVPLPILFAWYLFWTVKGHPQASNGLAVAGAFLVFAFVHWL
CCCCCCCEEEEEEEEEEEEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
RVRTNPGPYPGRQFTAIAVDQTACMIGMILTGELGAIIAFVNLWISLGNGIRFGVKWMAL
HHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
SALFATTGLIAVGLLSDYWTQHPIWIFSLLLLNVAIPAYVASLIRGYHESRAQLARYAGE
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MEEIALTDTLTGLPNRAAFFSQLQKAVSHAQRTQSSIALLYFDLDGFKQVNDSLGHAHGD
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHCCCHHH
SLLKQTALRVGQCLRGEDVLARLGGDEFVVLLNAQDKEKRVEKVAARILQAVASIDQVDG
HHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
HRVEVTASAGIVLVSGAHAAALGSEGMIHEADKNMYAAKKKGKNQTVLSSFPAELRLVAG
CEEEEEECCCEEEEECCCHHHCCCCCCEECCCCCHHHHHHCCCCCHHHHHCCHHHHHHCC
LDR
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]