| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is gmk
Identifier: 74316491
GI number: 74316491
Start: 496096
End: 496725
Strand: Reverse
Name: gmk
Synonym: Tbd_0473
Alternate gene names: 74316491
Gene position: 496725-496096 (Counterclockwise)
Preceding gene: 74316492
Following gene: 74316490
Centisome position: 17.07
GC content: 66.67
Gene sequence:
>630_bases ATGACCCCCCCCGCCAGCCCTGGTGTTCTTTACATCGTCAGCGCCCCCTCCGGCGCCGGCAAGACCAGCCTCGTCAAGGC GCTGCTGAAGAGCGACCCGGCGATCCGCCTGTCCGTTTCCCACACCACGCGCGCCCCGCGTCCGGGCGAGAGCGACGGCC GCGACTACCACTTCGTCGCGCGCGACACCTTCGAGAAAATGCTGGCCGACGGCGAATTTCTCGAACACGCCGAGGTGTAC GGCAACTTCTACGGCACCTCCCGGGGCCGCATCGGGCAGGAACTCGACGCCGGGCGCGACCTTCTGCTGGAGATCGACTG GCAGGGCGCCGAGCAGGTCAAGCGGCACTTCCCGCAATCGACGTCGATATTCATCCTGCCGCCGACCTTCAGCGCCTTGC GCACGCGCCTGACCGGACGCGGCCAGGACAGCCCGGAAATCATCGAGCGCCGGCTCGCCGCGGCGGCGCACGACGTCGCT CATGCCGAGGCGTTCGACTATATAATCGTCAACGATGACTTCGACCACGCCCTCCAGGATCTGGTCGCGATCACCCGCAG CATTCGCCTCGAAGCGCAGCGCCAGCTGAAACGCCACGCCGCCCTTTTCGGGGAATTCCGACGCATTTGA
Upstream 100 bases:
>100_bases GTCGCGGTCGAGACCTCGCGCACCTCGCTCGAACTCAAGGTGCTGATCGAGCAGATGCGCGAGCAGGTGCAGAATATTGA ATGAGCGATCCGGAGCAACC
Downstream 100 bases:
>100_bases AACGCCCGAAGCAGGAGTATCCCCATGGCCCGCATCACCGTCGATGATTGCATTGACAACATCCCCAACCGTTTCGAACT CACGCTGGCCGTGACCTACC
Product: guanylate kinase
Products: NA
Alternate protein names: GMP kinase
Number of amino acids: Translated: 209; Mature: 208
Protein sequence:
>209_residues MTPPASPGVLYIVSAPSGAGKTSLVKALLKSDPAIRLSVSHTTRAPRPGESDGRDYHFVARDTFEKMLADGEFLEHAEVY GNFYGTSRGRIGQELDAGRDLLLEIDWQGAEQVKRHFPQSTSIFILPPTFSALRTRLTGRGQDSPEIIERRLAAAAHDVA HAEAFDYIIVNDDFDHALQDLVAITRSIRLEAQRQLKRHAALFGEFRRI
Sequences:
>Translated_209_residues MTPPASPGVLYIVSAPSGAGKTSLVKALLKSDPAIRLSVSHTTRAPRPGESDGRDYHFVARDTFEKMLADGEFLEHAEVY GNFYGTSRGRIGQELDAGRDLLLEIDWQGAEQVKRHFPQSTSIFILPPTFSALRTRLTGRGQDSPEIIERRLAAAAHDVA HAEAFDYIIVNDDFDHALQDLVAITRSIRLEAQRQLKRHAALFGEFRRI >Mature_208_residues TPPASPGVLYIVSAPSGAGKTSLVKALLKSDPAIRLSVSHTTRAPRPGESDGRDYHFVARDTFEKMLADGEFLEHAEVYG NFYGTSRGRIGQELDAGRDLLLEIDWQGAEQVKRHFPQSTSIFILPPTFSALRTRLTGRGQDSPEIIERRLAAAAHDVAH AEAFDYIIVNDDFDHALQDLVAITRSIRLEAQRQLKRHAALFGEFRRI
Specific function: Essential for recycling GMP and indirectly, cGMP
COG id: COG0194
COG function: function code F; Guanylate kinase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 guanylate kinase-like domain
Homologues:
Organism=Homo sapiens, GI226874833, Length=188, Percent_Identity=40.4255319148936, Blast_Score=138, Evalue=4e-33, Organism=Homo sapiens, GI4504221, Length=188, Percent_Identity=40.4255319148936, Blast_Score=138, Evalue=4e-33, Organism=Homo sapiens, GI226874831, Length=188, Percent_Identity=40.4255319148936, Blast_Score=137, Evalue=6e-33, Organism=Homo sapiens, GI38570142, Length=196, Percent_Identity=33.6734693877551, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI21361598, Length=200, Percent_Identity=28.5, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI14780902, Length=201, Percent_Identity=26.865671641791, Blast_Score=82, Evalue=2e-16, Organism=Homo sapiens, GI52630447, Length=200, Percent_Identity=27.5, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI111154074, Length=177, Percent_Identity=29.9435028248588, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI262118263, Length=166, Percent_Identity=29.5180722891566, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI4505237, Length=166, Percent_Identity=29.5180722891566, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI262118259, Length=166, Percent_Identity=28.9156626506024, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI262118255, Length=174, Percent_Identity=29.3103448275862, Blast_Score=70, Evalue=1e-12, Organism=Escherichia coli, GI1790080, Length=201, Percent_Identity=55.7213930348259, Blast_Score=226, Evalue=6e-61, Organism=Caenorhabditis elegans, GI193203132, Length=188, Percent_Identity=35.6382978723404, Blast_Score=126, Evalue=8e-30, Organism=Caenorhabditis elegans, GI17508835, Length=188, Percent_Identity=35.6382978723404, Blast_Score=125, Evalue=1e-29, Organism=Caenorhabditis elegans, GI17557440, Length=193, Percent_Identity=25.3886010362694, Blast_Score=67, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6320662, Length=175, Percent_Identity=42.8571428571429, Blast_Score=148, Evalue=8e-37, Organism=Drosophila melanogaster, GI21356141, Length=188, Percent_Identity=37.2340425531915, Blast_Score=117, Evalue=5e-27, Organism=Drosophila melanogaster, GI116007136, Length=184, Percent_Identity=28.804347826087, Blast_Score=81, Evalue=5e-16, Organism=Drosophila melanogaster, GI85724806, Length=184, Percent_Identity=28.804347826087, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI45554489, Length=184, Percent_Identity=28.804347826087, Blast_Score=80, Evalue=7e-16, Organism=Drosophila melanogaster, GI24640542, Length=184, Percent_Identity=28.804347826087, Blast_Score=80, Evalue=7e-16, Organism=Drosophila melanogaster, GI45554481, Length=184, Percent_Identity=28.804347826087, Blast_Score=80, Evalue=7e-16, Organism=Drosophila melanogaster, GI161077626, Length=184, Percent_Identity=28.804347826087, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI221330166, Length=192, Percent_Identity=30.2083333333333, Blast_Score=74, Evalue=6e-14, Organism=Drosophila melanogaster, GI221330162, Length=192, Percent_Identity=30.2083333333333, Blast_Score=74, Evalue=6e-14, Organism=Drosophila melanogaster, GI221330164, Length=192, Percent_Identity=30.2083333333333, Blast_Score=74, Evalue=7e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): KGUA_THIDA (Q3SLI4)
Other databases:
- EMBL: CP000116 - RefSeq: YP_314231.1 - HSSP: P60546 - ProteinModelPortal: Q3SLI4 - SMR: Q3SLI4 - STRING: Q3SLI4 - GeneID: 3673106 - GenomeReviews: CP000116_GR - KEGG: tbd:Tbd_0473 - NMPDR: fig|292415.3.peg.33 - eggNOG: COG0194 - HOGENOM: HBG671982 - OMA: DIDWQGT - PhylomeDB: Q3SLI4 - BioCyc: TDEN292415:TBD_0473-MONOMER - GO: GO:0005737 - HAMAP: MF_00328 - InterPro: IPR008144 - InterPro: IPR008145 - InterPro: IPR020590 - InterPro: IPR017665 - SMART: SM00072 - TIGRFAMs: TIGR03263
Pfam domain/function: PF00625 Guanylate_kin
EC number: =2.7.4.8
Molecular weight: Translated: 23236; Mature: 23105
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: PS00856 GUANYLATE_KINASE_1; PS50052 GUANYLATE_KINASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPPASPGVLYIVSAPSGAGKTSLVKALLKSDPAIRLSVSHTTRAPRPGESDGRDYHFVA CCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEHH RDTFEKMLADGEFLEHAEVYGNFYGTSRGRIGQELDAGRDLLLEIDWQGAEQVKRHFPQS HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHCCCCEEEEEECCCCHHHHHHHCCCC TSIFILPPTFSALRTRLTGRGQDSPEIIERRLAAAAHDVAHAEAFDYIIVNDDFDHALQD CEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHH LVAITRSIRLEAQRQLKRHAALFGEFRRI HHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TPPASPGVLYIVSAPSGAGKTSLVKALLKSDPAIRLSVSHTTRAPRPGESDGRDYHFVA CCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEHH RDTFEKMLADGEFLEHAEVYGNFYGTSRGRIGQELDAGRDLLLEIDWQGAEQVKRHFPQS HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHCCCCEEEEEECCCCHHHHHHHCCCC TSIFILPPTFSALRTRLTGRGQDSPEIIERRLAAAAHDVAHAEAFDYIIVNDDFDHALQD CEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHH LVAITRSIRLEAQRQLKRHAALFGEFRRI HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA