| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74316396
Identifier: 74316396
GI number: 74316396
Start: 406529
End: 407836
Strand: Direct
Name: 74316396
Synonym: Tbd_0378
Alternate gene names: NA
Gene position: 406529-407836 (Clockwise)
Preceding gene: 74316395
Following gene: 74316397
Centisome position: 13.97
GC content: 66.9
Gene sequence:
>1308_bases ATGTCAATTAAGCGTTTCTTCGCCGTTCTCGTGCTGATCCTGGCGGCGCCGGTGCAGGCCGGGGTCGACATCCAGCATTG GCAGACCCCCGAGGGCGCGCGGGTCTTCTTCGTCGAAAGCCATGAGCTGCCGATCCTCGATATCTCCGTCGACTTCCGCG CCGGCAGCGCGCGTGACCCGGTCGACAAGAGCGGTCTCGCGCGGCTCACCCACGCCCTGCTCGACCAGGGCGCGGGCGGC CTCAGCGACACCGAGATCGCCCATCGGCTGGCCGATGTCGGTGCCGTGCTGGGCGGCAATTTCGACCGCGATCGCGCGGG CGTGACCTTGCGTACGCTCTCGTCGATGGCCGAAAAGACGGCCGCGCTGGACACACTCGTCCGCGTGCTGCAGCAGCCGG ACTTTCCGCTTGCGGTGATGCAGCGTGAACGGCGGCGCCTCATTTCGTCGATTCGCGAAGCCGAGGCCGACCCCGGAACC GTCGCCGAGAAGGCGTTCTACCGCGCGCTATACGCCGACCATCCCTATGCGCGCGACGAGAACGGCGTGCCGGGCAATCT CGAGAAGCTGACCCGCAACGACGTGAGCGCGTTCTACCGCGCGCATTACGGCGCCCCAAACGCGGTCATCTCGCTGATCG GCGCGATCAGCCGCAGCGAGGCCGAGGCGATCGCGACGCGCCTCGCCGAGGGTCTGCCGGCGGCAGCGTCGCTCGCCGAT CTGCCGCTGCCGGTCGCAGCGACCGCGTCGACCGTGCGTTTTGCGCACCCGTCGACGCAAAGCCATGTCCTGATGGGCGC GGTCGGCGTGGCGCGCAGCGACCCCGACTATTTCCCGCTTTTCGTGGGCAACTATGCCCTCGGCGGCGGCGGGTTCGACT CGCGCCTGATGCGCGAGGTGCGCGACAAGCGCGGCTTCGCCTACAGCGCCTACAGTTACTTCCTGCCAATGCTGCAGGCC GGGCCGTTCCAGCTGGGGCTGCAGACCAAGCTCGAGCAGACCGACGAAGCGATGGAGGTCGCACGCTCGACGCTGCAGCA ATTCATCGCCGAGGGGCCGAGCGAGGCCGAACTCGTGCAGGCCAAGGCCAACCTCACCGGCGGTTTCCCGCTGCGCATCG ACAGCAACAAGAAGATCCTCGAATACCTTGCCGTGATCGGTTTCTACAACCTGCCTCTGGATTATCTCGAGACCTGGACC GACAAGGTCAATGCGGTCGACACTGCGGCGGTCAGACAGGCCTTCGCGCGCCATCTCGACCCGGAGCGTCTGGTTACCGT CGTCGTCGGAGCCGAAGGTGCTCGCTAA
Upstream 100 bases:
>100_bases GCGCAGGAGTGGTTGCGCGAAGACCGCCTGAGCGTGGCCGAACTCGACCCCCAGGCGCTCAAACCGCAGCCTGAACGCAC GGCCGTGCCGGGAGTACGTC
Downstream 100 bases:
>100_bases GCAGGCCGCGCCGAAGCGCGCGCACGGCGCCGCCAATCGCGTCCGCATCGTCGGCGGACGCTATCGCAGCCGGCTGCTCG CGTTTCCCGACGGCACCGGC
Product: insulinase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 435; Mature: 434
Protein sequence:
>435_residues MSIKRFFAVLVLILAAPVQAGVDIQHWQTPEGARVFFVESHELPILDISVDFRAGSARDPVDKSGLARLTHALLDQGAGG LSDTEIAHRLADVGAVLGGNFDRDRAGVTLRTLSSMAEKTAALDTLVRVLQQPDFPLAVMQRERRRLISSIREAEADPGT VAEKAFYRALYADHPYARDENGVPGNLEKLTRNDVSAFYRAHYGAPNAVISLIGAISRSEAEAIATRLAEGLPAAASLAD LPLPVAATASTVRFAHPSTQSHVLMGAVGVARSDPDYFPLFVGNYALGGGGFDSRLMREVRDKRGFAYSAYSYFLPMLQA GPFQLGLQTKLEQTDEAMEVARSTLQQFIAEGPSEAELVQAKANLTGGFPLRIDSNKKILEYLAVIGFYNLPLDYLETWT DKVNAVDTAAVRQAFARHLDPERLVTVVVGAEGAR
Sequences:
>Translated_435_residues MSIKRFFAVLVLILAAPVQAGVDIQHWQTPEGARVFFVESHELPILDISVDFRAGSARDPVDKSGLARLTHALLDQGAGG LSDTEIAHRLADVGAVLGGNFDRDRAGVTLRTLSSMAEKTAALDTLVRVLQQPDFPLAVMQRERRRLISSIREAEADPGT VAEKAFYRALYADHPYARDENGVPGNLEKLTRNDVSAFYRAHYGAPNAVISLIGAISRSEAEAIATRLAEGLPAAASLAD LPLPVAATASTVRFAHPSTQSHVLMGAVGVARSDPDYFPLFVGNYALGGGGFDSRLMREVRDKRGFAYSAYSYFLPMLQA GPFQLGLQTKLEQTDEAMEVARSTLQQFIAEGPSEAELVQAKANLTGGFPLRIDSNKKILEYLAVIGFYNLPLDYLETWT DKVNAVDTAAVRQAFARHLDPERLVTVVVGAEGAR >Mature_434_residues SIKRFFAVLVLILAAPVQAGVDIQHWQTPEGARVFFVESHELPILDISVDFRAGSARDPVDKSGLARLTHALLDQGAGGL SDTEIAHRLADVGAVLGGNFDRDRAGVTLRTLSSMAEKTAALDTLVRVLQQPDFPLAVMQRERRRLISSIREAEADPGTV AEKAFYRALYADHPYARDENGVPGNLEKLTRNDVSAFYRAHYGAPNAVISLIGAISRSEAEAIATRLAEGLPAAASLADL PLPVAATASTVRFAHPSTQSHVLMGAVGVARSDPDYFPLFVGNYALGGGGFDSRLMREVRDKRGFAYSAYSYFLPMLQAG PFQLGLQTKLEQTDEAMEVARSTLQQFIAEGPSEAELVQAKANLTGGFPLRIDSNKKILEYLAVIGFYNLPLDYLETWTD KVNAVDTAAVRQAFARHLDPERLVTVVVGAEGAR
Specific function: Unknown
COG id: COG0612
COG function: function code R; Predicted Zn-dependent peptidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M16 family [H]
Homologues:
Organism=Homo sapiens, GI94538354, Length=394, Percent_Identity=19.5431472081218, Blast_Score=66, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6323192, Length=346, Percent_Identity=23.9884393063584, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI21357875, Length=377, Percent_Identity=22.0159151193634, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI24646943, Length=377, Percent_Identity=22.0159151193634, Blast_Score=76, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011249 - InterPro: IPR011237 - InterPro: IPR007863 [H]
Pfam domain/function: PF05193 Peptidase_M16_C [H]
EC number: NA
Molecular weight: Translated: 47137; Mature: 47006
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIKRFFAVLVLILAAPVQAGVDIQHWQTPEGARVFFVESHELPILDISVDFRAGSARDP CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCC VDKSGLARLTHALLDQGAGGLSDTEIAHRLADVGAVLGGNFDRDRAGVTLRTLSSMAEKT CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHH AALDTLVRVLQQPDFPLAVMQRERRRLISSIREAEADPGTVAEKAFYRALYADHPYARDE HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCC NGVPGNLEKLTRNDVSAFYRAHYGAPNAVISLIGAISRSEAEAIATRLAEGLPAAASLAD CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHC LPLPVAATASTVRFAHPSTQSHVLMGAVGVARSDPDYFPLFVGNYALGGGGFDSRLMREV CCCCCHHCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCEECCCCCHHHHHHHHH RDKRGFAYSAYSYFLPMLQAGPFQLGLQTKLEQTDEAMEVARSTLQQFIAEGPSEAELVQ HHHCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH AKANLTGGFPLRIDSNKKILEYLAVIGFYNLPLDYLETWTDKVNAVDTAAVRQAFARHLD HHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC PERLVTVVVGAEGAR HHHEEEEEECCCCCC >Mature Secondary Structure SIKRFFAVLVLILAAPVQAGVDIQHWQTPEGARVFFVESHELPILDISVDFRAGSARDP CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCC VDKSGLARLTHALLDQGAGGLSDTEIAHRLADVGAVLGGNFDRDRAGVTLRTLSSMAEKT CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHH AALDTLVRVLQQPDFPLAVMQRERRRLISSIREAEADPGTVAEKAFYRALYADHPYARDE HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCC NGVPGNLEKLTRNDVSAFYRAHYGAPNAVISLIGAISRSEAEAIATRLAEGLPAAASLAD CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHC LPLPVAATASTVRFAHPSTQSHVLMGAVGVARSDPDYFPLFVGNYALGGGGFDSRLMREV CCCCCHHCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCEECCCCCHHHHHHHHH RDKRGFAYSAYSYFLPMLQAGPFQLGLQTKLEQTDEAMEVARSTLQQFIAEGPSEAELVQ HHHCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH AKANLTGGFPLRIDSNKKILEYLAVIGFYNLPLDYLETWTDKVNAVDTAAVRQAFARHLD HHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC PERLVTVVVGAEGAR HHHEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]