| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is yahD [C]
Identifier: 74316379
GI number: 74316379
Start: 392078
End: 392983
Strand: Direct
Name: yahD [C]
Synonym: Tbd_0361
Alternate gene names: 74316379
Gene position: 392078-392983 (Clockwise)
Preceding gene: 74316378
Following gene: 74316380
Centisome position: 13.47
GC content: 67.55
Gene sequence:
>906_bases ATGCGCTCTTCAAGAACACCTGGCTGTCGGCAAAGTGGATGTCGTCGGACGAGATCAGCGGCCTGCCGCTCGCTATCGAC GTCTTCCAGCTCGACCTCAATGCAAAGTTCTAAGGCCTTGATTCTCCTCGTGGGGCTAGCGCCGGCCTACGCAGTTGCGC AGCCGCTGGCCGACACCGAGCTGGGATGGCTGGTCACCGAATCGACCGAGCGCCCGCCGCGCGTGGCGAGGCTGCGCCCG CCTCCGGAGCGATTCACGGTCATCGCCGCCGACGGCAACTTCGTGCCGCCCCGCGTCCAGCGGGGCGAGGAAGCCGAACT GATGGACGCGGCGCTCCGCGGCGACCTCGCAGCGGTGCGGGCTCGGCTCACGGCGGGGGCGAATCCGAACGTCGGCGACT ACTGGCGGGACGTACCGCTGGTGGGAGCCGCGCGCCGGGACGACCTGGAACTCGCTCAGATCCTCCTCGATGCGGGTGCC GTGCCTAACGTCAAGGGGCGTGGCCATACCCCACTGGGCATCGCGGCGAAAAACGGAAACGTGCGCCTGGTCGAACTGCT ACTACGTTTCGGTGCCGATCCCGACCGCAAGAGCGACGACGGCGACACCCCGGTGCACGGTGCGGCGCTGATCGGTCACG CCTCAGTCATCGACGCGCTCGCCCGAGCCCGGCCCGACTTGTTCACTTTCAACCGCGAGGGGCTCTCTGCGCTTGCCGTG GCTGCGGCCAATGGCCAATATGCCGTTGCCGAGGCGCTGGTCCGCGCAGGGGCGCCGCTGGATTGGGGCGACAAGAAATT CCATTCGCCGTTGTGGTGGGCATTTTCGGTGGGAGATCTGGAGATGGCACGGCTGTTGTTGAGGCTGGGCGCCGCGCCGG GCCAGTTGCCCGTGGGGAGCTTGTGA
Upstream 100 bases:
>100_bases TACCGCTACGTCGAACGCGACGCCGTGCTCGACGCGTTCACCGATTCGGATTTCCACTTGGGCGGCACCAACCACAAGGG CTTCATGATCGGCGGTTCGT
Downstream 100 bases:
>100_bases TGAAACGTGTGGCATGGATGGTGCTCGCGACAGCGATAGCGTCAGCGTCAGCGTCAGCGTATGCGGGGAACGACAGTCGC GAAAAGCAGATGCTGCGCCG
Product: ankyrin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 301; Mature: 301
Protein sequence:
>301_residues MRSSRTPGCRQSGCRRTRSAACRSLSTSSSSTSMQSSKALILLVGLAPAYAVAQPLADTELGWLVTESTERPPRVARLRP PPERFTVIAADGNFVPPRVQRGEEAELMDAALRGDLAAVRARLTAGANPNVGDYWRDVPLVGAARRDDLELAQILLDAGA VPNVKGRGHTPLGIAAKNGNVRLVELLLRFGADPDRKSDDGDTPVHGAALIGHASVIDALARARPDLFTFNREGLSALAV AAANGQYAVAEALVRAGAPLDWGDKKFHSPLWWAFSVGDLEMARLLLRLGAAPGQLPVGSL
Sequences:
>Translated_301_residues MRSSRTPGCRQSGCRRTRSAACRSLSTSSSSTSMQSSKALILLVGLAPAYAVAQPLADTELGWLVTESTERPPRVARLRP PPERFTVIAADGNFVPPRVQRGEEAELMDAALRGDLAAVRARLTAGANPNVGDYWRDVPLVGAARRDDLELAQILLDAGA VPNVKGRGHTPLGIAAKNGNVRLVELLLRFGADPDRKSDDGDTPVHGAALIGHASVIDALARARPDLFTFNREGLSALAV AAANGQYAVAEALVRAGAPLDWGDKKFHSPLWWAFSVGDLEMARLLLRLGAAPGQLPVGSL >Mature_301_residues MRSSRTPGCRQSGCRRTRSAACRSLSTSSSSTSMQSSKALILLVGLAPAYAVAQPLADTELGWLVTESTERPPRVARLRP PPERFTVIAADGNFVPPRVQRGEEAELMDAALRGDLAAVRARLTAGANPNVGDYWRDVPLVGAARRDDLELAQILLDAGA VPNVKGRGHTPLGIAAKNGNVRLVELLLRFGADPDRKSDDGDTPVHGAALIGHASVIDALARARPDLFTFNREGLSALAV AAANGQYAVAEALVRAGAPLDWGDKKFHSPLWWAFSVGDLEMARLLLRLGAAPGQLPVGSL
Specific function: Unknown
COG id: COG0666
COG function: function code R; FOG: Ankyrin repeat
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glutamine amidotransferase type-1 domain [H]
Homologues:
Organism=Homo sapiens, GI70780355, Length=188, Percent_Identity=35.1063829787234, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI215598574, Length=185, Percent_Identity=35.1351351351351, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI70780353, Length=185, Percent_Identity=35.1351351351351, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI70780359, Length=185, Percent_Identity=35.1351351351351, Blast_Score=95, Evalue=8e-20, Organism=Homo sapiens, GI70780357, Length=185, Percent_Identity=35.1351351351351, Blast_Score=95, Evalue=9e-20, Organism=Homo sapiens, GI225543461, Length=158, Percent_Identity=38.6075949367089, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI225543463, Length=158, Percent_Identity=38.6075949367089, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI32967601, Length=152, Percent_Identity=36.1842105263158, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI157739945, Length=158, Percent_Identity=36.0759493670886, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI52426737, Length=185, Percent_Identity=34.5945945945946, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI188595682, Length=185, Percent_Identity=34.5945945945946, Blast_Score=85, Evalue=9e-17, Organism=Homo sapiens, GI157743284, Length=189, Percent_Identity=36.5079365079365, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI52426735, Length=185, Percent_Identity=34.5945945945946, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI38683807, Length=190, Percent_Identity=34.7368421052632, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI37620163, Length=191, Percent_Identity=32.9842931937173, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI38683816, Length=190, Percent_Identity=34.7368421052632, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI46519147, Length=191, Percent_Identity=32.9842931937173, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI267844887, Length=212, Percent_Identity=32.5471698113208, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI30425444, Length=179, Percent_Identity=34.0782122905028, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI55741641, Length=183, Percent_Identity=29.5081967213115, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI22208951, Length=205, Percent_Identity=32.1951219512195, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI7705831, Length=205, Percent_Identity=32.1951219512195, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI46519151, Length=207, Percent_Identity=31.4009661835749, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI255982572, Length=202, Percent_Identity=32.6732673267327, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI46519154, Length=207, Percent_Identity=31.4009661835749, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI89363047, Length=185, Percent_Identity=30.2702702702703, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI18252778, Length=186, Percent_Identity=30.1075268817204, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI24233530, Length=190, Percent_Identity=29.4736842105263, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI304361760, Length=184, Percent_Identity=29.3478260869565, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI304361757, Length=184, Percent_Identity=29.3478260869565, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI68131557, Length=184, Percent_Identity=29.3478260869565, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI140161500, Length=189, Percent_Identity=30.6878306878307, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI62988328, Length=196, Percent_Identity=31.6326530612245, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI268607595, Length=196, Percent_Identity=31.6326530612245, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI116875852, Length=150, Percent_Identity=32, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI50511945, Length=188, Percent_Identity=31.9148936170213, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI87239981, Length=225, Percent_Identity=28, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI13376842, Length=205, Percent_Identity=33.6585365853659, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI56676397, Length=109, Percent_Identity=40.3669724770642, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI156142197, Length=196, Percent_Identity=31.6326530612245, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI30348954, Length=184, Percent_Identity=33.695652173913, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI55742857, Length=182, Percent_Identity=30.7692307692308, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI156142199, Length=196, Percent_Identity=31.6326530612245, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI121582655, Length=191, Percent_Identity=32.4607329842932, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI294337037, Length=223, Percent_Identity=33.1838565022422, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI215598806, Length=223, Percent_Identity=33.1838565022422, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI294337038, Length=223, Percent_Identity=33.1838565022422, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI18254476, Length=186, Percent_Identity=33.8709677419355, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI22208957, Length=167, Percent_Identity=31.7365269461078, Blast_Score=65, Evalue=9e-11, Organism=Homo sapiens, GI41327754, Length=160, Percent_Identity=33.125, Blast_Score=65, Evalue=1e-10, Organism=Caenorhabditis elegans, GI17542700, Length=187, Percent_Identity=32.0855614973262, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI25145251, Length=187, Percent_Identity=32.0855614973262, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI71981389, Length=187, Percent_Identity=32.0855614973262, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI71981414, Length=187, Percent_Identity=32.0855614973262, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71981411, Length=187, Percent_Identity=32.0855614973262, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17540144, Length=164, Percent_Identity=28.0487804878049, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI212645194, Length=185, Percent_Identity=31.3513513513514, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI161082089, Length=154, Percent_Identity=33.1168831168831, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24581260, Length=190, Percent_Identity=31.5789473684211, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI24581258, Length=190, Percent_Identity=31.5789473684211, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI45551135, Length=183, Percent_Identity=31.6939890710383, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI281363919, Length=183, Percent_Identity=31.6939890710383, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI28573593, Length=183, Percent_Identity=31.6939890710383, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI45550479, Length=183, Percent_Identity=31.6939890710383, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI221330476, Length=183, Percent_Identity=31.6939890710383, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI221330480, Length=183, Percent_Identity=31.6939890710383, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI221330478, Length=183, Percent_Identity=31.6939890710383, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI221330474, Length=183, Percent_Identity=31.6939890710383, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI221330482, Length=183, Percent_Identity=31.6939890710383, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI161082110, Length=154, Percent_Identity=33.1168831168831, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI161082085, Length=154, Percent_Identity=33.1168831168831, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI161082099, Length=154, Percent_Identity=33.1168831168831, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI161082096, Length=154, Percent_Identity=33.1168831168831, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI281359521, Length=157, Percent_Identity=29.2993630573248, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI281359519, Length=157, Percent_Identity=29.2993630573248, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI28558752, Length=157, Percent_Identity=29.2993630573248, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI28558750, Length=157, Percent_Identity=29.2993630573248, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI28558756, Length=157, Percent_Identity=29.2993630573248, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI28558754, Length=157, Percent_Identity=29.2993630573248, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI161082081, Length=154, Percent_Identity=33.1168831168831, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI161082106, Length=154, Percent_Identity=33.1168831168831, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI28571867, Length=187, Percent_Identity=32.0855614973262, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI28571865, Length=187, Percent_Identity=32.0855614973262, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI45550629, Length=131, Percent_Identity=36.6412213740458, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI161082092, Length=182, Percent_Identity=31.8681318681319, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI45552223, Length=156, Percent_Identity=32.0512820512821, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI221472807, Length=156, Percent_Identity=32.0512820512821, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI17998549, Length=156, Percent_Identity=32.0512820512821, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21356741, Length=217, Percent_Identity=30.8755760368664, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002110 - InterPro: IPR020683 - InterPro: IPR017926 - InterPro: IPR011697 [H]
Pfam domain/function: PF00023 Ank; PF07722 Peptidase_C26 [H]
EC number: NA
Molecular weight: Translated: 31888; Mature: 31888
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSSRTPGCRQSGCRRTRSAACRSLSTSSSSTSMQSSKALILLVGLAPAYAVAQPLADTE CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCEEEEEEECCHHHHHHHCCCCCC LGWLVTESTERPPRVARLRPPPERFTVIAADGNFVPPRVQRGEEAELMDAALRGDLAAVR CCEEEECCCCCCCCCCCCCCCHHHEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHH ARLTAGANPNVGDYWRDVPLVGAARRDDLELAQILLDAGAVPNVKGRGHTPLGIAAKNGN HHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC VRLVELLLRFGADPDRKSDDGDTPVHGAALIGHASVIDALARARPDLFTFNREGLSALAV CHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEE AAANGQYAVAEALVRAGAPLDWGDKKFHSPLWWAFSVGDLEMARLLLRLGAAPGQLPVGS EECCCCHHHHHHHHHCCCCCCCCCHHHCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCC L C >Mature Secondary Structure MRSSRTPGCRQSGCRRTRSAACRSLSTSSSSTSMQSSKALILLVGLAPAYAVAQPLADTE CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCEEEEEEECCHHHHHHHCCCCCC LGWLVTESTERPPRVARLRPPPERFTVIAADGNFVPPRVQRGEEAELMDAALRGDLAAVR CCEEEECCCCCCCCCCCCCCCHHHEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHH ARLTAGANPNVGDYWRDVPLVGAARRDDLELAQILLDAGAVPNVKGRGHTPLGIAAKNGN HHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC VRLVELLLRFGADPDRKSDDGDTPVHGAALIGHASVIDALARARPDLFTFNREGLSALAV CHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEE AAANGQYAVAEALVRAGAPLDWGDKKFHSPLWWAFSVGDLEMARLLLRLGAAPGQLPVGS EECCCCHHHHHHHHHCCCCCCCCCHHHCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCC L C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA