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The map label for this gene is comF [H]

Identifier: 74316335

GI number: 74316335

Start: 341702

End: 342394

Strand: Reverse

Name: comF [H]

Synonym: Tbd_0317

Alternate gene names: 74316335

Gene position: 342394-341702 (Counterclockwise)

Preceding gene: 74316349

Following gene: 74316332

Centisome position: 11.77

GC content: 70.85

Gene sequence:

>693_bases
TTGAACATCCGCTCATTTCTCGATCACCTTGCCCCCCGGACTTGCCTGCTCTGCGGCGATACGGCCGGCGCACGCACGCT
CTGCCCCGGCTGCCGCGACAGCCTGCCTTGGCACCGCGCGCCGCAATGCCCGCGCTGCGCGACGCCGACCCCCGGTGGCG
CGGTATGCGGCGCCTGCCTCAAGCATTCGCCGGCCTTCGACCGCACCATCGCGGCGCTGGCTTACGCGTTTCCGCTCGAC
CGCATGATTCCGCGGCTCAAATATCACGGCGCGCTCGCCGTGGCGCCGTTACTCGGCGAATGCCTGACCGAGGCGTGCAG
GACGCAGCCCCGCCCTGACCGCCTGCTCGCGATGCCCCTGCACGCCGGGCGTATCCGCGAGCGCGGGTTCAACCACGCGA
CCGAGATCGCGCGCGACGTGGCGAAGCGCCTTCAGCTACCGCTCGACCGCGACAGTTGCCGGCGCATTCGCGACACCCCG
CCGCAGATGGGCCTGCGACACGACGCGCGACGCCGCAACCTGCGTGGCGCCTTCGCCTGCTCGACGGATCTGGGCGGGAT
GCACGTCGCCGTGATCGACGACGTCATGACGACGGGGACGAGCCTGAACGAACTCGCCGCGACCTTGAAGCGGGCCGGCG
CACGCGAGGTGAGCTGCTGGGTCGCGGCACGCACGCTTCCGTATCGCGGCTGA

Upstream 100 bases:

>100_bases
CGGCTCGGCGCGAGGCGCCGGCGGGGATGACGCGTTGGGCATTCATGGGGCGAATTCTCGGGGCGGCACCCGCCACTGTC
AAATTTAATGGGGCCGGAAA

Downstream 100 bases:

>100_bases
ACGCCCGCCCGCGGCAGGAAAGAAGGGGCCGCGGCGGCCGCTAGCGCGCGGGACGGCCCTTTAGTCGTAAATCTCCTCGA
CCGCGTAGATCCGGCGATGT

Product: hypothetical protein

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MNIRSFLDHLAPRTCLLCGDTAGARTLCPGCRDSLPWHRAPQCPRCATPTPGGAVCGACLKHSPAFDRTIAALAYAFPLD
RMIPRLKYHGALAVAPLLGECLTEACRTQPRPDRLLAMPLHAGRIRERGFNHATEIARDVAKRLQLPLDRDSCRRIRDTP
PQMGLRHDARRRNLRGAFACSTDLGGMHVAVIDDVMTTGTSLNELAATLKRAGAREVSCWVAARTLPYRG

Sequences:

>Translated_230_residues
MNIRSFLDHLAPRTCLLCGDTAGARTLCPGCRDSLPWHRAPQCPRCATPTPGGAVCGACLKHSPAFDRTIAALAYAFPLD
RMIPRLKYHGALAVAPLLGECLTEACRTQPRPDRLLAMPLHAGRIRERGFNHATEIARDVAKRLQLPLDRDSCRRIRDTP
PQMGLRHDARRRNLRGAFACSTDLGGMHVAVIDDVMTTGTSLNELAATLKRAGAREVSCWVAARTLPYRG
>Mature_230_residues
MNIRSFLDHLAPRTCLLCGDTAGARTLCPGCRDSLPWHRAPQCPRCATPTPGGAVCGACLKHSPAFDRTIAALAYAFPLD
RMIPRLKYHGALAVAPLLGECLTEACRTQPRPDRLLAMPLHAGRIRERGFNHATEIARDVAKRLQLPLDRDSCRRIRDTP
PQMGLRHDARRRNLRGAFACSTDLGGMHVAVIDDVMTTGTSLNELAATLKRAGAREVSCWVAARTLPYRG

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=191, Percent_Identity=33.5078534031414, Blast_Score=98, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 25184; Mature: 25184

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
5.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRSFLDHLAPRTCLLCGDTAGARTLCPGCRDSLPWHRAPQCPRCATPTPGGAVCGACL
CCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
KHSPAFDRTIAALAYAFPLDRMIPRLKYHGALAVAPLLGECLTEACRTQPRPDRLLAMPL
HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCC
HAGRIRERGFNHATEIARDVAKRLQLPLDRDSCRRIRDTPPQMGLRHDARRRNLRGAFAC
CHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHCCCHHHHHHHCCCCEEEE
STDLGGMHVAVIDDVMTTGTSLNELAATLKRAGAREVSCWVAARTLPYRG
CCCCCCEEHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNIRSFLDHLAPRTCLLCGDTAGARTLCPGCRDSLPWHRAPQCPRCATPTPGGAVCGACL
CCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
KHSPAFDRTIAALAYAFPLDRMIPRLKYHGALAVAPLLGECLTEACRTQPRPDRLLAMPL
HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCC
HAGRIRERGFNHATEIARDVAKRLQLPLDRDSCRRIRDTPPQMGLRHDARRRNLRGAFAC
CHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHCCCHHHHHHHCCCCEEEE
STDLGGMHVAVIDDVMTTGTSLNELAATLKRAGAREVSCWVAARTLPYRG
CCCCCCEEHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]