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The map label for this gene is lpsB [H]

Identifier: 74316309

GI number: 74316309

Start: 309748

End: 310896

Strand: Direct

Name: lpsB [H]

Synonym: Tbd_0291

Alternate gene names: 74316309

Gene position: 309748-310896 (Clockwise)

Preceding gene: 74316308

Following gene: 74316310

Centisome position: 10.64

GC content: 69.02

Gene sequence:

>1149_bases
GTGACGGTCCATATCGTGCACGTCGTCCACCGCTTCGACACCGGCGGCATGGAAAACGGCATGGTCAATCTTTTCAACAC
GCTTCCGCCCGAGCGTTTTCGCCACACGGTCGTGGCGCTCACCGATTACAGCGCCTTCCGCCATCGCATCACCGCGCAGC
GCGTCGATTTTCACGCACTCAACCGGCCGCCCGGCCACGACGTCGGCTGGGCGCTGCAACTCTGGCGCCTGTTGCGCCGG
CTCAAGCCCGACCTCGTGCATACGCGCAACCTCGCCGCGCTCGAAGCGCAGTTCGTCGCGGCGGCCGCCGGCGTGCGCGC
GACTGTGCACGGCGAGCATGGCCGCGATGTCTTCGACCTTCACGGCCGCAACTGGAAGTACAACCTGCTGCGCCGGGCGG
CGCGGCCGCTGGTGACCAACTATCTCGCCGTGAGCCGCGACCTCGAGGCCTGGCTGCGCCGCGACATCGGCGTGCCGGCG
CATCGCCTGCACCAGGTTTACAACGGCGTCGACAGCGTGAAATTCCATCCGCGCAGCGGGCCGCGGCCTGACTTCGCCCA
CCCCGAGAGCATAGTGTTCGGCTCGGTCGGGCGCATGGTCGAGGTCAAGAATTACCCGCTGCTGGTGCGGGCGTTCATCC
AGCTCATGCGCCAGCAGCCGGACCGCGCCGAGCGCGCGCGGCTCGCGATCGTCGGCGCCGGCCCGGCGCGCGAGGCCTGC
CTCGAGATGCTGCAAGGCGCCGGCCTCGATCACCTTGCCTGGCTGCCGGGCGAGCGCGACGACATCGCGGCGGTCATGCA
GGCGCTCGACGTCTTCGTCCTGCCGTCGAAAAACGAGGGCGTCTCCAATACCATCCTCGAAGCCTTCGCGAGCGGCCTGC
CGGTCATCGCGACGGCGGTCGGCGGCAACGTCGAACTGGTCGAACACGGCGTCAGCGGCCTGCTCGTGCCGTCCGACGAC
CTCGACGAGATGGTACGGGCCTTGCTCTTCTACCTCGACTCGCCGGCCCGCATCGGCGCGCACGGCAAGGCGGCGCGCGA
GCGTGCCGAGCAGCGCTTCAGCATCCCGGCGATGGCGCGGGCCTACGCCGACGTTTACGAACAGACGCTTGGCAGGCGAC
GCCAAACGGCCGTCGACCGGCCCGAATAA

Upstream 100 bases:

>100_bases
ACGAGGAAGGCCGTATCGACGACGCGGCAGCGACGCTCGCGCGCTTCGCGGCGGACATGGGCCCGGCGCTGGAAAAAACG
CTCGATCGGGTCGACGGGAA

Downstream 100 bases:

>100_bases
TCGACAGAACAGGATTCGACACGCATGTGCGGCATCACCGGGATTTTCGACACCAGCGGCGTCAACGCGATTTCACGCGA
CCTGCTGCAGCGCATGAACG

Product: group 1 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MTVHIVHVVHRFDTGGMENGMVNLFNTLPPERFRHTVVALTDYSAFRHRITAQRVDFHALNRPPGHDVGWALQLWRLLRR
LKPDLVHTRNLAALEAQFVAAAAGVRATVHGEHGRDVFDLHGRNWKYNLLRRAARPLVTNYLAVSRDLEAWLRRDIGVPA
HRLHQVYNGVDSVKFHPRSGPRPDFAHPESIVFGSVGRMVEVKNYPLLVRAFIQLMRQQPDRAERARLAIVGAGPAREAC
LEMLQGAGLDHLAWLPGERDDIAAVMQALDVFVLPSKNEGVSNTILEAFASGLPVIATAVGGNVELVEHGVSGLLVPSDD
LDEMVRALLFYLDSPARIGAHGKAARERAEQRFSIPAMARAYADVYEQTLGRRRQTAVDRPE

Sequences:

>Translated_382_residues
MTVHIVHVVHRFDTGGMENGMVNLFNTLPPERFRHTVVALTDYSAFRHRITAQRVDFHALNRPPGHDVGWALQLWRLLRR
LKPDLVHTRNLAALEAQFVAAAAGVRATVHGEHGRDVFDLHGRNWKYNLLRRAARPLVTNYLAVSRDLEAWLRRDIGVPA
HRLHQVYNGVDSVKFHPRSGPRPDFAHPESIVFGSVGRMVEVKNYPLLVRAFIQLMRQQPDRAERARLAIVGAGPAREAC
LEMLQGAGLDHLAWLPGERDDIAAVMQALDVFVLPSKNEGVSNTILEAFASGLPVIATAVGGNVELVEHGVSGLLVPSDD
LDEMVRALLFYLDSPARIGAHGKAARERAEQRFSIPAMARAYADVYEQTLGRRRQTAVDRPE
>Mature_381_residues
TVHIVHVVHRFDTGGMENGMVNLFNTLPPERFRHTVVALTDYSAFRHRITAQRVDFHALNRPPGHDVGWALQLWRLLRRL
KPDLVHTRNLAALEAQFVAAAAGVRATVHGEHGRDVFDLHGRNWKYNLLRRAARPLVTNYLAVSRDLEAWLRRDIGVPAH
RLHQVYNGVDSVKFHPRSGPRPDFAHPESIVFGSVGRMVEVKNYPLLVRAFIQLMRQQPDRAERARLAIVGAGPAREACL
EMLQGAGLDHLAWLPGERDDIAAVMQALDVFVLPSKNEGVSNTILEAFASGLPVIATAVGGNVELVEHGVSGLLVPSDDL
DEMVRALLFYLDSPARIGAHGKAARERAEQRFSIPAMARAYADVYEQTLGRRRQTAVDRPE

Specific function: Acts at transfer of mannose group to a 3-deoxy-D-mono octulonic acid (KDO) via an alpha-1,5 linkage [H]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

Organism=Escherichia coli, GI1788357, Length=231, Percent_Identity=29.8701298701299, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 42626; Mature: 42495

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVHIVHVVHRFDTGGMENGMVNLFNTLPPERFRHTVVALTDYSAFRHRITAQRVDFHAL
CEEEEEEEEHHHCCCCCCCCHHHHHHCCCHHHHHCEEEEEECHHHHHHHHHHHHHHHHCC
NRPPGHDVGWALQLWRLLRRLKPDLVHTRNLAALEAQFVAAAAGVRATVHGEHGRDVFDL
CCCCCCCHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEC
HGRNWKYNLLRRAARPLVTNYLAVSRDLEAWLRRDIGVPAHRLHQVYNGVDSVKFHPRSG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEECCCCC
PRPDFAHPESIVFGSVGRMVEVKNYPLLVRAFIQLMRQQPDRAERARLAIVGAGPAREAC
CCCCCCCCCHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHCEEEEEECCHHHHHH
LEMLQGAGLDHLAWLPGERDDIAAVMQALDVFVLPSKNEGVSNTILEAFASGLPVIATAV
HHHHHCCCCCCEEECCCCHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCCEEEEEC
GGNVELVEHGVSGLLVPSDDLDEMVRALLFYLDSPARIGAHGKAARERAEQRFSIPAMAR
CCCHHEECCCCCEEECCCCCHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHCCCHHHHH
AYADVYEQTLGRRRQTAVDRPE
HHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TVHIVHVVHRFDTGGMENGMVNLFNTLPPERFRHTVVALTDYSAFRHRITAQRVDFHAL
EEEEEEEEHHHCCCCCCCCHHHHHHCCCHHHHHCEEEEEECHHHHHHHHHHHHHHHHCC
NRPPGHDVGWALQLWRLLRRLKPDLVHTRNLAALEAQFVAAAAGVRATVHGEHGRDVFDL
CCCCCCCHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEC
HGRNWKYNLLRRAARPLVTNYLAVSRDLEAWLRRDIGVPAHRLHQVYNGVDSVKFHPRSG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEECCCCC
PRPDFAHPESIVFGSVGRMVEVKNYPLLVRAFIQLMRQQPDRAERARLAIVGAGPAREAC
CCCCCCCCCHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHCEEEEEECCHHHHHH
LEMLQGAGLDHLAWLPGERDDIAAVMQALDVFVLPSKNEGVSNTILEAFASGLPVIATAV
HHHHHCCCCCCEEECCCCHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCCEEEEEC
GGNVELVEHGVSGLLVPSDDLDEMVRALLFYLDSPARIGAHGKAARERAEQRFSIPAMAR
CCCHHEECCCCCEEECCCCCHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHCCCHHHHH
AYADVYEQTLGRRRQTAVDRPE
HHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]