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The map label for this gene is rlpA [C]

Identifier: 74316283

GI number: 74316283

Start: 286763

End: 287623

Strand: Direct

Name: rlpA [C]

Synonym: Tbd_0265

Alternate gene names: 74316283

Gene position: 286763-287623 (Clockwise)

Preceding gene: 74316282

Following gene: 74316284

Centisome position: 9.86

GC content: 67.83

Gene sequence:

>861_bases
ATGAAAATCCTCCTGATGTCGGGCGCCGCCGCATTGGCGCTCACGCTCGCAGGCTGCGGCACCACGCCGCCCGCCAGGCA
GACGCCGCCTGTGCAGACACCTACCGAGCAGGCACCGAACAAGACCTCGAAAGCCGGGGGCTATTACCTCGACGACGGTC
CCGAGGCCAACCCGCCGCCCGATCTCGACGCCGTGCCGGATGCCGTGCCGCGCGCCGAGCCCCTGCACCGTTTCGCCAAC
CGCACCTATACCGCGCTCGGTGCGACCTATACGCCGATGGCTCAGCGCCGCGCCTATCGCGAGGAAGGCGTGGCGTCCTG
GTACGGGCGCCGCTTCCATGGCAAGAAGACCGCGTCCGGCGAGCCTTACGACATGTACGCGATGACCGCCGCGCATCCGA
CGCTGCCGATCCCGAGCTACGCCCGAGTGACCTCGCTCGCCAACGGCAAGTCGGTCGTCGTGCGCATCAACGACCGCGGG
CCCTTCCACAGCAAGCGAGTGATCGACCTCTCGTATACCGCCGCGCACAAGCTCGGTTACGTCAAGCAAGGCAGCGCGCG
CGTGCGGGTGGAGAGCCTCGATACTGAAAGCGAGGAAGGCGACGCCCCAGGCGAGGCGCTGCTCGCCCAAGGCATCTATC
TTCAGGTCGGGGCGTTTTCGCGTGCCGATAACGCGCTCGCGCTCCTCAACCGCCTGCAGCGCGAACTCCAGCTCGACGCG
GGCCTCGGCCGCGTCGTGCTTAAGCGCTCGCTGCACCATGTGCAACTCGGGCCTTATCCGAGCGACGCCGCCGCGAAGGC
CGACCGCGCGCGGGTTAGGGAACGTCTCGACCTTTCGGCAGTCCTCGTCAGACGCGAATGA

Upstream 100 bases:

>100_bases
GCGGCACCGCGCTCGTCACGCTGCTCCTGGGCATGGGCATCCTGATGAGCGTGGCGACCCATCGCCAGCTCAATAAAACC
TGACGGGATAAAATACCGCC

Downstream 100 bases:

>100_bases
TTTTGAAGCCCCCGATGAAATTCCTGTGGTTGACGCTCGCCTGGCTGCTATCCGCTTCGGCAATCGCCGCGCCGACCGGT
ATTGCGGCCCGCGCGTGGGT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MKILLMSGAAALALTLAGCGTTPPARQTPPVQTPTEQAPNKTSKAGGYYLDDGPEANPPPDLDAVPDAVPRAEPLHRFAN
RTYTALGATYTPMAQRRAYREEGVASWYGRRFHGKKTASGEPYDMYAMTAAHPTLPIPSYARVTSLANGKSVVVRINDRG
PFHSKRVIDLSYTAAHKLGYVKQGSARVRVESLDTESEEGDAPGEALLAQGIYLQVGAFSRADNALALLNRLQRELQLDA
GLGRVVLKRSLHHVQLGPYPSDAAAKADRARVRERLDLSAVLVRRE

Sequences:

>Translated_286_residues
MKILLMSGAAALALTLAGCGTTPPARQTPPVQTPTEQAPNKTSKAGGYYLDDGPEANPPPDLDAVPDAVPRAEPLHRFAN
RTYTALGATYTPMAQRRAYREEGVASWYGRRFHGKKTASGEPYDMYAMTAAHPTLPIPSYARVTSLANGKSVVVRINDRG
PFHSKRVIDLSYTAAHKLGYVKQGSARVRVESLDTESEEGDAPGEALLAQGIYLQVGAFSRADNALALLNRLQRELQLDA
GLGRVVLKRSLHHVQLGPYPSDAAAKADRARVRERLDLSAVLVRRE
>Mature_286_residues
MKILLMSGAAALALTLAGCGTTPPARQTPPVQTPTEQAPNKTSKAGGYYLDDGPEANPPPDLDAVPDAVPRAEPLHRFAN
RTYTALGATYTPMAQRRAYREEGVASWYGRRFHGKKTASGEPYDMYAMTAAHPTLPIPSYARVTSLANGKSVVVRINDRG
PFHSKRVIDLSYTAAHKLGYVKQGSARVRVESLDTESEEGDAPGEALLAQGIYLQVGAFSRADNALALLNRLQRELQLDA
GLGRVVLKRSLHHVQLGPYPSDAAAKADRARVRERLDLSAVLVRRE

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=126, Percent_Identity=46.031746031746, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 30980; Mature: 30980

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILLMSGAAALALTLAGCGTTPPARQTPPVQTPTEQAPNKTSKAGGYYLDDGPEANPPP
CEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
DLDAVPDAVPRAEPLHRFANRTYTALGATYTPMAQRRAYREEGVASWYGRRFHGKKTASG
CCCCCCCCCCCHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
EPYDMYAMTAAHPTLPIPSYARVTSLANGKSVVVRINDRGPFHSKRVIDLSYTAAHKLGY
CCEEEEEEEECCCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEHHHHHHHCC
VKQGSARVRVESLDTESEEGDAPGEALLAQGIYLQVGAFSRADNALALLNRLQRELQLDA
EECCCCEEEEEECCCCCCCCCCCHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC
GLGRVVLKRSLHHVQLGPYPSDAAAKADRARVRERLDLSAVLVRRE
CHHHHHHHHHHCEEECCCCCCHHHHHHHHHHHHHHHCHHHEEEECC
>Mature Secondary Structure
MKILLMSGAAALALTLAGCGTTPPARQTPPVQTPTEQAPNKTSKAGGYYLDDGPEANPPP
CEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
DLDAVPDAVPRAEPLHRFANRTYTALGATYTPMAQRRAYREEGVASWYGRRFHGKKTASG
CCCCCCCCCCCHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
EPYDMYAMTAAHPTLPIPSYARVTSLANGKSVVVRINDRGPFHSKRVIDLSYTAAHKLGY
CCEEEEEEEECCCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEHHHHHHHCC
VKQGSARVRVESLDTESEEGDAPGEALLAQGIYLQVGAFSRADNALALLNRLQRELQLDA
EECCCCEEEEEECCCCCCCCCCCHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC
GLGRVVLKRSLHHVQLGPYPSDAAAKADRARVRERLDLSAVLVRRE
CHHHHHHHHHHCEEECCCCCCHHHHHHHHHHHHHHHCHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]