| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is cbbG [H]
Identifier: 74316178
GI number: 74316178
Start: 172476
End: 173477
Strand: Direct
Name: cbbG [H]
Synonym: Tbd_0160
Alternate gene names: 74316178
Gene position: 172476-173477 (Clockwise)
Preceding gene: 74316177
Following gene: 74316179
Centisome position: 5.93
GC content: 62.97
Gene sequence:
>1002_bases GTGGCTATCAAAGTAGGTATCAACGGTTTTGGCCGCATCGGCCGCATGGCTTTCCGCGCGATCGCCAAGGACTTCCCGGA CATCGAAGTGGTCGCGATCAACGACCTGCTCGATCCCGAGTACCTGGCCTACATGCTGAAATACGATTCGGTGCACGGCA ACTTCAAGGGCGACATCGCCGTCGAAGGCAACAACCTCATCGTCAACGGCAAGAAGATCCGCCTGACCGCCGAGCGCGAG CCCGCCAACCTGAAGTGGAACGAAGTCGGCGCCGAGCTGGTGATCGAGTGCACGGGCTTCTTCCTGACCAAGGAAACCTG CCAGAAGCACATCGACGCCGGCGCCAAGAAAGTCGTGCAGTCCGCGCCTTCCAAGGACGACACCCCGATGTTCGTATACG GCGTGAACCACGAGAAGTACGCCGGCGAGGCCATCGTCTCGGCCGCTTCGTGCACGACCAACTGCCTCGCGCCGATCGCC AAGGTGCTGAACGACAACTGGGGCATCAAGCGCGGCCTGATGAGCACCGTGCACGCCGCCACCGCGACCCAGAAGACCGT CGACGGCCCGTCGTCCAAGGACTGGCGCGGCGGCCGCGGCATCCTCGAAAACATCATCCCGTCCTCGACCGGCGCCGCCA AGGCCGTCGGCGTGGTGTTGCCTGAGCTGAAGGGCAAGCTGACCGGCATGGCGTTCCGCGTTCCGACCTCCGACGTCTCG GTCGTCGACCTGACCGTCGAGCTCGAGAAGCCCGCCAAGTACGCGGACATCTGCGCCGCGATGAAGAAGGCTTCGCAGTC GGGCGACATCAGCAAGACCCTCGGCTACACCGACGAGAAAGTCGTTTCGACCGACTTCCGCGGCAACGGCTTCTCGTCGA TCTTCGACGCCGAAGCCGGCATCGCGCTCGACGACACCTTCGTCAAGGTCGTGTCGTGGTACGACAACGAGTACGGCTAC ACCTGCAACATGCTGCGCTTCGTGCAGCACGTCGCGAAGTAA
Upstream 100 bases:
>100_bases GCGTCAGAGACGACGCGGCCTTCGGCCGCTCACTCCCTGACCCCTGAATCCCGGCCCCTGACCCCTAGATAAGATTTTCA ACCTGACTGGGAGACTGTAA
Downstream 100 bases:
>100_bases GGGGTCAGGATTCAGGGATCAGGGTTCAGGGAATGCGCGGGCGTAGCCCGCCCAAATCAGGGGTGCGGCCTCGGCCGCTC GTTCCCTGACCCCTGAATCC
Product: glyceraldehyde-3-phosphate dehydrogenase
Products: NA
Alternate protein names: GAPDH [H]
Number of amino acids: Translated: 333; Mature: 332
Protein sequence:
>333_residues MAIKVGINGFGRIGRMAFRAIAKDFPDIEVVAINDLLDPEYLAYMLKYDSVHGNFKGDIAVEGNNLIVNGKKIRLTAERE PANLKWNEVGAELVIECTGFFLTKETCQKHIDAGAKKVVQSAPSKDDTPMFVYGVNHEKYAGEAIVSAASCTTNCLAPIA KVLNDNWGIKRGLMSTVHAATATQKTVDGPSSKDWRGGRGILENIIPSSTGAAKAVGVVLPELKGKLTGMAFRVPTSDVS VVDLTVELEKPAKYADICAAMKKASQSGDISKTLGYTDEKVVSTDFRGNGFSSIFDAEAGIALDDTFVKVVSWYDNEYGY TCNMLRFVQHVAK
Sequences:
>Translated_333_residues MAIKVGINGFGRIGRMAFRAIAKDFPDIEVVAINDLLDPEYLAYMLKYDSVHGNFKGDIAVEGNNLIVNGKKIRLTAERE PANLKWNEVGAELVIECTGFFLTKETCQKHIDAGAKKVVQSAPSKDDTPMFVYGVNHEKYAGEAIVSAASCTTNCLAPIA KVLNDNWGIKRGLMSTVHAATATQKTVDGPSSKDWRGGRGILENIIPSSTGAAKAVGVVLPELKGKLTGMAFRVPTSDVS VVDLTVELEKPAKYADICAAMKKASQSGDISKTLGYTDEKVVSTDFRGNGFSSIFDAEAGIALDDTFVKVVSWYDNEYGY TCNMLRFVQHVAK >Mature_332_residues AIKVGINGFGRIGRMAFRAIAKDFPDIEVVAINDLLDPEYLAYMLKYDSVHGNFKGDIAVEGNNLIVNGKKIRLTAEREP ANLKWNEVGAELVIECTGFFLTKETCQKHIDAGAKKVVQSAPSKDDTPMFVYGVNHEKYAGEAIVSAASCTTNCLAPIAK VLNDNWGIKRGLMSTVHAATATQKTVDGPSSKDWRGGRGILENIIPSSTGAAKAVGVVLPELKGKLTGMAFRVPTSDVSV VDLTVELEKPAKYADICAAMKKASQSGDISKTLGYTDEKVVSTDFRGNGFSSIFDAEAGIALDDTFVKVVSWYDNEYGYT CNMLRFVQHVAK
Specific function: Second phase of glycolysis; first step. [C]
COG id: COG0057
COG function: function code G; Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glyceraldehyde-3-phosphate dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI7669492, Length=332, Percent_Identity=59.3373493975904, Blast_Score=397, Evalue=1e-110, Organism=Homo sapiens, GI7657116, Length=332, Percent_Identity=56.6265060240964, Blast_Score=371, Evalue=1e-103, Organism=Escherichia coli, GI1788079, Length=333, Percent_Identity=69.6696696696697, Blast_Score=472, Evalue=1e-134, Organism=Escherichia coli, GI1789295, Length=329, Percent_Identity=38.2978723404255, Blast_Score=233, Evalue=1e-62, Organism=Caenorhabditis elegans, GI17534677, Length=337, Percent_Identity=58.4569732937685, Blast_Score=374, Evalue=1e-104, Organism=Caenorhabditis elegans, GI32566163, Length=337, Percent_Identity=58.4569732937685, Blast_Score=374, Evalue=1e-104, Organism=Caenorhabditis elegans, GI17568413, Length=337, Percent_Identity=58.4569732937685, Blast_Score=374, Evalue=1e-104, Organism=Caenorhabditis elegans, GI17534679, Length=337, Percent_Identity=57.8635014836795, Blast_Score=372, Evalue=1e-103, Organism=Saccharomyces cerevisiae, GI6321631, Length=333, Percent_Identity=60.960960960961, Blast_Score=398, Evalue=1e-112, Organism=Saccharomyces cerevisiae, GI6322409, Length=333, Percent_Identity=60.0600600600601, Blast_Score=394, Evalue=1e-110, Organism=Saccharomyces cerevisiae, GI6322468, Length=333, Percent_Identity=60.3603603603604, Blast_Score=392, Evalue=1e-110, Organism=Drosophila melanogaster, GI19922412, Length=329, Percent_Identity=61.7021276595745, Blast_Score=400, Evalue=1e-112, Organism=Drosophila melanogaster, GI85725000, Length=330, Percent_Identity=58.1818181818182, Blast_Score=379, Evalue=1e-105, Organism=Drosophila melanogaster, GI22023983, Length=330, Percent_Identity=58.1818181818182, Blast_Score=379, Evalue=1e-105, Organism=Drosophila melanogaster, GI17933600, Length=330, Percent_Identity=57.8787878787879, Blast_Score=378, Evalue=1e-105, Organism=Drosophila melanogaster, GI18110149, Length=330, Percent_Identity=57.8787878787879, Blast_Score=378, Evalue=1e-105,
Paralogues:
None
Copy number: 220 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1840 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 740 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1660 Molecules/Cell In: Growth Phase, Min
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020831 - InterPro: IPR020830 - InterPro: IPR020829 - InterPro: IPR020828 - InterPro: IPR006424 - InterPro: IPR016040 [H]
Pfam domain/function: PF02800 Gp_dh_C; PF00044 Gp_dh_N [H]
EC number: =1.2.1.12 [H]
Molecular weight: Translated: 36004; Mature: 35873
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: PS00071 GAPDH
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIKVGINGFGRIGRMAFRAIAKDFPDIEVVAINDLLDPEYLAYMLKYDSVHGNFKGDIA CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE VEGNNLIVNGKKIRLTAEREPANLKWNEVGAELVIECTGFFLTKETCQKHIDAGAKKVVQ EECCEEEEECEEEEEEECCCCCCCCHHHHCCEEEEEECCCEEEHHHHHHHHHHHHHHHHH SAPSKDDTPMFVYGVNHEKYAGEAIVSAASCTTNCLAPIAKVLNDNWGIKRGLMSTVHAA CCCCCCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH TATQKTVDGPSSKDWRGGRGILENIIPSSTGAAKAVGVVLPELKGKLTGMAFRVPTSDVS HHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCE VVDLTVELEKPAKYADICAAMKKASQSGDISKTLGYTDEKVVSTDFRGNGFSSIFDAEAG EEEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCEEEECCCCCCCCHHHCCCCC IALDDTFVKVVSWYDNEYGYTCNMLRFVQHVAK CEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure AIKVGINGFGRIGRMAFRAIAKDFPDIEVVAINDLLDPEYLAYMLKYDSVHGNFKGDIA EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE VEGNNLIVNGKKIRLTAEREPANLKWNEVGAELVIECTGFFLTKETCQKHIDAGAKKVVQ EECCEEEEECEEEEEEECCCCCCCCHHHHCCEEEEEECCCEEEHHHHHHHHHHHHHHHHH SAPSKDDTPMFVYGVNHEKYAGEAIVSAASCTTNCLAPIAKVLNDNWGIKRGLMSTVHAA CCCCCCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH TATQKTVDGPSSKDWRGGRGILENIIPSSTGAAKAVGVVLPELKGKLTGMAFRVPTSDVS HHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCE VVDLTVELEKPAKYADICAAMKKASQSGDISKTLGYTDEKVVSTDFRGNGFSSIFDAEAG EEEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCEEEECCCCCCCCHHHCCCCC IALDDTFVKVVSWYDNEYGYTCNMLRFVQHVAK CEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11823852; 8366033 [H]