| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74316171
Identifier: 74316171
GI number: 74316171
Start: 164980
End: 165828
Strand: Reverse
Name: 74316171
Synonym: Tbd_0153
Alternate gene names: NA
Gene position: 165828-164980 (Counterclockwise)
Preceding gene: 74316172
Following gene: 74316170
Centisome position: 5.7
GC content: 69.49
Gene sequence:
>849_bases ATGGCGTACTTCTTCGCGGGCGTGCTGGCGCTGCTGTTCGGGCTGATGCTCGCCGGCCCGGCGGCCGTCCGCGCGGCCGA GAAACCGCTCATCTTCGGTGTCTTTCCCAAGCTGACCGCGCGCCAGACGGTGACCGCCTACCTGCCGCTCGCCAAAAGCA TGGAAAAGCAACTCGGCCGACCGGTCGCAATCTACAGCGCCCGCGACTTCGAGACCTTCGTCGAGCGGACCGCTCGCGGC GAATACGACATCGTGCTGACGGCCCCGCATCTGGCCTGGCTCGCCCGCCAGGACGCCGGCTATGCGCCGCTCGTGAAGTA TGCCGAGCCGACGCGCGGCCTCCTCGTCGTGGCCCGCGCTTCGGCGTATCGCCGACCCGAGGAGATGCGCGGCCGCACGA TCGCGACTGCCGACGCGATCGCGGTGACCGTATTGGCAGCCGAGGCCGAACTCGCCGCGCGCGGCATCGAGCGCCAGATC GACTATCAGACCCGTGACGCCGGCACCCACTACAACGCCGTCATGCAGGTGCTCAACGGGCGTGCCGACGCCGCGATGCT CGGCCTGCACCCCTATCTGCTGCTGCCCTCCGAGGTCCGCGCACGCTTGCGCATCCTCGCCGAAACCGGGCCCTTGTCGA GCCTGATGTACCTGACCCATCCGCGCCTGCCTGCGCGCGACGCGGAGGCGGTCCGCCGCGGCATTCTCGCCTTCGCCGGG ACCGCGGAAGGCACACGCTTCCTGCAGCAGGGCGGCTACGGCAGTTTCATTGCCGCCGACGGCAGTGAACTGCCGGCGCT GCAGCCTTATGCGCTGGAAGCGCGAGAGTTGTTGCGGGCGCGGCGATGA
Upstream 100 bases:
>100_bases GGAAACGGCCTTGCACCGACTCTACCGACGGCACCGAGACCGCCCCGCCCTGCCTGCCGGTCGCGTTGGCTGCGCTGCCA CGTCGCGCGCCGCGCCCCGG
Downstream 100 bases:
>100_bases AAGCCTGGTTCGGACGACTTTCGCTGCGTTACAAACTGACGCTCGCCGCGCTCGCCGTCGAGGCGGTGATGCTGGCCTTG CTGATCGCCAACGGCGTCCA
Product: ABC transporter periplasmic protein
Products: NA
Alternate protein names: ABC-Type Transport System Periplasmic Component
Number of amino acids: Translated: 282; Mature: 281
Protein sequence:
>282_residues MAYFFAGVLALLFGLMLAGPAAVRAAEKPLIFGVFPKLTARQTVTAYLPLAKSMEKQLGRPVAIYSARDFETFVERTARG EYDIVLTAPHLAWLARQDAGYAPLVKYAEPTRGLLVVARASAYRRPEEMRGRTIATADAIAVTVLAAEAELAARGIERQI DYQTRDAGTHYNAVMQVLNGRADAAMLGLHPYLLLPSEVRARLRILAETGPLSSLMYLTHPRLPARDAEAVRRGILAFAG TAEGTRFLQQGGYGSFIAADGSELPALQPYALEARELLRARR
Sequences:
>Translated_282_residues MAYFFAGVLALLFGLMLAGPAAVRAAEKPLIFGVFPKLTARQTVTAYLPLAKSMEKQLGRPVAIYSARDFETFVERTARG EYDIVLTAPHLAWLARQDAGYAPLVKYAEPTRGLLVVARASAYRRPEEMRGRTIATADAIAVTVLAAEAELAARGIERQI DYQTRDAGTHYNAVMQVLNGRADAAMLGLHPYLLLPSEVRARLRILAETGPLSSLMYLTHPRLPARDAEAVRRGILAFAG TAEGTRFLQQGGYGSFIAADGSELPALQPYALEARELLRARR >Mature_281_residues AYFFAGVLALLFGLMLAGPAAVRAAEKPLIFGVFPKLTARQTVTAYLPLAKSMEKQLGRPVAIYSARDFETFVERTARGE YDIVLTAPHLAWLARQDAGYAPLVKYAEPTRGLLVVARASAYRRPEEMRGRTIATADAIAVTVLAAEAELAARGIERQID YQTRDAGTHYNAVMQVLNGRADAAMLGLHPYLLLPSEVRARLRILAETGPLSSLMYLTHPRLPARDAEAVRRGILAFAGT AEGTRFLQQGGYGSFIAADGSELPALQPYALEARELLRARR
Specific function: Unknown
COG id: COG3221
COG function: function code P; ABC-type phosphate/phosphonate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30772; Mature: 30641
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYFFAGVLALLFGLMLAGPAAVRAAEKPLIFGVFPKLTARQTVTAYLPLAKSMEKQLGR CHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC PVAIYSARDFETFVERTARGEYDIVLTAPHLAWLARQDAGYAPLVKYAEPTRGLLVVARA CEEEEECCHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCCCCCHHHCCCCCCCEEEEEEC SAYRRPEEMRGRTIATADAIAVTVLAAEAELAARGIERQIDYQTRDAGTHYNAVMQVLNG HHHCCCHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC RADAAMLGLHPYLLLPSEVRARLRILAETGPLSSLMYLTHPRLPARDAEAVRRGILAFAG CCCEEEECCCCEEECCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCC TAEGTRFLQQGGYGSFIAADGSELPALQPYALEARELLRARR CCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure AYFFAGVLALLFGLMLAGPAAVRAAEKPLIFGVFPKLTARQTVTAYLPLAKSMEKQLGR HHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC PVAIYSARDFETFVERTARGEYDIVLTAPHLAWLARQDAGYAPLVKYAEPTRGLLVVARA CEEEEECCHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCCCCCHHHCCCCCCCEEEEEEC SAYRRPEEMRGRTIATADAIAVTVLAAEAELAARGIERQIDYQTRDAGTHYNAVMQVLNG HHHCCCHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC RADAAMLGLHPYLLLPSEVRARLRILAETGPLSSLMYLTHPRLPARDAEAVRRGILAFAG CCCEEEECCCCEEECCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCC TAEGTRFLQQGGYGSFIAADGSELPALQPYALEARELLRARR CCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA