Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is 74316155

Identifier: 74316155

GI number: 74316155

Start: 146284

End: 146817

Strand: Reverse

Name: 74316155

Synonym: Tbd_0137

Alternate gene names: NA

Gene position: 146817-146284 (Counterclockwise)

Preceding gene: 74316156

Following gene: 74316154

Centisome position: 5.05

GC content: 68.16

Gene sequence:

>534_bases
ATGAACTACTTCATACGCGGTGTCGCCGTGGTGGCGACGGTGGGCGCGATGAGCCTGCTCGCGTTCTCGCTGCCGTCCGG
CGGGGAGGCGCGCGGCGACGGCGGCGGGCACGATCTGATGCCGCGCCAAACAAACACCAACTGGCAACAGGAGTGCGGCA
GCTGTCACCTGGCCTACCCGCCGTCGCTGCTGCCGAAAGCCTCGTGGCGTCGCGTGATGGCGGACCTCGATGCGCATTTC
GGCGAGAACGCGAGCCTCGAGCCGGCGACTCAGGCCGATATCCAGCGCTTTCTCGAAATCCACGCGGCCGACAGCGGCAA
CAGCCGTATGGGCGACAGGGTGATGCGGCGGGCGGCACCCGCTGCGGCGCCACTGCGGATCACCGAGACACGATGGTTCG
TGCGCGAGCACCATGAGGTGTCGCGGGCAACCTGGTCGCGCAAGTCGATCGGCTCGGCCGCCAACTGCGCGGCCTGCCAC
CGCCAGGCCGAGCGCGGGGTATTCGAGGAAGACACGGTGAAGATCCCGCGATAA

Upstream 100 bases:

>100_bases
TTTCGCCGCAATTGCATGGACGTGCTGCAACGCGAATGCAGCGCGCAGGAAAAAGGCGATTTCGTCGCCTGGCTCAGTCA
GCTCAAATGAGGAGGACGAC

Downstream 100 bases:

>100_bases
GCTGACGCGATGCGCATACTCCTGGTCGAAGACGACGCCCTGTTGGGCGACGGCCTCAAGGCCGGGCTCTCGCAATCGGG
CTTTGCCGTCGACTGGCTGC

Product: diheme cytochrome c

Products: NA

Alternate protein names: Lipoprotein; Dihem Cytochrome C; DHC Diheme Cytochrome C; Cytochrome B; Multihaem Cytochrome; Transcriptional Regulator; Dihaem Cytochrome C; Diheme Cytochrome C

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MNYFIRGVAVVATVGAMSLLAFSLPSGGEARGDGGGHDLMPRQTNTNWQQECGSCHLAYPPSLLPKASWRRVMADLDAHF
GENASLEPATQADIQRFLEIHAADSGNSRMGDRVMRRAAPAAAPLRITETRWFVREHHEVSRATWSRKSIGSAANCAACH
RQAERGVFEEDTVKIPR

Sequences:

>Translated_177_residues
MNYFIRGVAVVATVGAMSLLAFSLPSGGEARGDGGGHDLMPRQTNTNWQQECGSCHLAYPPSLLPKASWRRVMADLDAHF
GENASLEPATQADIQRFLEIHAADSGNSRMGDRVMRRAAPAAAPLRITETRWFVREHHEVSRATWSRKSIGSAANCAACH
RQAERGVFEEDTVKIPR
>Mature_177_residues
MNYFIRGVAVVATVGAMSLLAFSLPSGGEARGDGGGHDLMPRQTNTNWQQECGSCHLAYPPSLLPKASWRRVMADLDAHF
GENASLEPATQADIQRFLEIHAADSGNSRMGDRVMRRAAPAAAPLRITETRWFVREHHEVSRATWSRKSIGSAANCAACH
RQAERGVFEEDTVKIPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19428; Mature: 19428

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYFIRGVAVVATVGAMSLLAFSLPSGGEARGDGGGHDLMPRQTNTNWQQECGSCHLAYP
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCEECCCC
PSLLPKASWRRVMADLDAHFGENASLEPATQADIQRFLEIHAADSGNSRMGDRVMRRAAP
CCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
AAAPLRITETRWFVREHHEVSRATWSRKSIGSAANCAACHRQAERGVFEEDTVKIPR
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEECCC
>Mature Secondary Structure
MNYFIRGVAVVATVGAMSLLAFSLPSGGEARGDGGGHDLMPRQTNTNWQQECGSCHLAYP
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCEECCCC
PSLLPKASWRRVMADLDAHFGENASLEPATQADIQRFLEIHAADSGNSRMGDRVMRRAAP
CCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
AAAPLRITETRWFVREHHEVSRATWSRKSIGSAANCAACHRQAERGVFEEDTVKIPR
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA