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The map label for this gene is shp [H]

Identifier: 74316156

GI number: 74316156

Start: 146828

End: 147229

Strand: Reverse

Name: shp [H]

Synonym: Tbd_0138

Alternate gene names: 74316156

Gene position: 147229-146828 (Counterclockwise)

Preceding gene: 74316157

Following gene: 74316155

Centisome position: 5.06

GC content: 67.91

Gene sequence:

>402_bases
ATGATTAAGCGACTGGCAGGCCCCGTATTGCTGCTGCTGTCGGTCAGCGCGCTCGCCGACGCGCCCGCGGATTTCACGGC
GCGTTACGCGGCACAGGCGGGCGTCGCCGCGAGCACGCTCTCGCCCGCGCGCGGCGAAGCGTTTTACCGCCTGGAACGCG
CGCATCCTGCCGGCGCCAAGCGCAGCTGCGCAGGCTGCCATAGCGTCGACCCGCGGCAGGCCGGGCGCACCCGCGTCGGC
AAGCGCATCGAGCCGCTTGCGCCTGTCGTCAACGGCGCGCGCTTCACCGACGCAGCCAAGGTCGAAAAGTGGTTTCGCCG
CAATTGCATGGACGTGCTGCAACGCGAATGCAGCGCGCAGGAAAAAGGCGATTTCGTCGCCTGGCTCAGTCAGCTCAAAT
GA

Upstream 100 bases:

>100_bases
CACCTCGCGGCGCTCGTGTTCCACCAGCTACGCGGCGAGCGCGTCGCGCAGAGCATGGTCACGGGCAAGCAATACCTCGA
TGCCGAAAGCGCGGTGCAAC

Downstream 100 bases:

>100_bases
GGAGGACGACATGAACTACTTCATACGCGGTGTCGCCGTGGTGGCGACGGTGGGCGCGATGAGCCTGCTCGCGTTCTCGC
TGCCGTCCGGCGGGGAGGCG

Product: cytochrome c''

Products: NA

Alternate protein names: Oxygen-binding heme protein; Sphaeroides heme protein [H]

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MIKRLAGPVLLLLSVSALADAPADFTARYAAQAGVAASTLSPARGEAFYRLERAHPAGAKRSCAGCHSVDPRQAGRTRVG
KRIEPLAPVVNGARFTDAAKVEKWFRRNCMDVLQRECSAQEKGDFVAWLSQLK

Sequences:

>Translated_133_residues
MIKRLAGPVLLLLSVSALADAPADFTARYAAQAGVAASTLSPARGEAFYRLERAHPAGAKRSCAGCHSVDPRQAGRTRVG
KRIEPLAPVVNGARFTDAAKVEKWFRRNCMDVLQRECSAQEKGDFVAWLSQLK
>Mature_133_residues
MIKRLAGPVLLLLSVSALADAPADFTARYAAQAGVAASTLSPARGEAFYRLERAHPAGAKRSCAGCHSVDPRQAGRTRVG
KRIEPLAPVVNGARFTDAAKVEKWFRRNCMDVLQRECSAQEKGDFVAWLSQLK

Specific function: High-spin cytochrome. Transiently bind oxygen during autoxidation, which occurs with a half-life of 3 min with a 4-fold excess of O(2). Also binds carbon monoxide, azide and cyanide [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR015170 [H]

Pfam domain/function: PF09086 DUF1924 [H]

EC number: NA

Molecular weight: Translated: 14396; Mature: 14396

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRLAGPVLLLLSVSALADAPADFTARYAAQAGVAASTLSPARGEAFYRLERAHPAGAK
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHCCCCCCC
RSCAGCHSVDPRQAGRTRVGKRIEPLAPVVNGARFTDAAKVEKWFRRNCMDVLQRECSAQ
CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
EKGDFVAWLSQLK
CCCHHHHHHHHCC
>Mature Secondary Structure
MIKRLAGPVLLLLSVSALADAPADFTARYAAQAGVAASTLSPARGEAFYRLERAHPAGAK
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHCCCCCCC
RSCAGCHSVDPRQAGRTRVGKRIEPLAPVVNGARFTDAAKVEKWFRRNCMDVLQRECSAQ
CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
EKGDFVAWLSQLK
CCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9558336; 10821858 [H]