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The map label for this gene is qseB [H]

Identifier: 74316154

GI number: 74316154

Start: 145612

End: 146274

Strand: Reverse

Name: qseB [H]

Synonym: Tbd_0136

Alternate gene names: 74316154

Gene position: 146274-145612 (Counterclockwise)

Preceding gene: 74316155

Following gene: 74316153

Centisome position: 5.03

GC content: 69.53

Gene sequence:

>663_bases
ATGCGCATACTCCTGGTCGAAGACGACGCCCTGTTGGGCGACGGCCTCAAGGCCGGGCTCTCGCAATCGGGCTTTGCCGT
CGACTGGCTGCGCGACGGCGAGGCGGCGGTCACCGCGCTCACCACCGAGCGCTTCGCCGCGGTCGTGCTCGATCTGGGCC
TGCCGCGGCGCGACGGTCTGTCGGTTCTGCAATGGCTGCGTGGGCGCGGCGACCCGACGCCGGTGCTGGTCCTCACCGCG
CGCGACCAGCTCGAAGACAAGGTGCGCGGCCTCGATCTCGGTGCCGACGATTACGTGCTGAAGCCCTTCGACCTCGACGA
GGTCGCGGCGCGCCTGCGTGCGCTGATGCGGCGTGCGCACGGCAAATCCGCCCCGCTTCTCAAGCTCGGCGACATCGAAC
TCGATCCGGCCGCGCGCTCGGTCACGCAGCGCGGACAGCCGGTCGACCTGACCGGCCGCGAGTTCGATCTGCTGCACGTC
CTGCTGCAGAGCAGCGGCCACGTGCTGACCCGGCGCATGCTCGAAGAACAGCTCTATACCTGGGACGAAGGCGTCGGCAG
CAACGCGCTCGAGGTTCATGTCCATCACCTGCGACGCAAGCTCGGCAACGACGTGATCCGCACCGTCCGCGGCGTCGGCT
ACATGGCGGCGCCCCCGACGTGA

Upstream 100 bases:

>100_bases
GTCGATCGGCTCGGCCGCCAACTGCGCGGCCTGCCACCGCCAGGCCGAGCGCGGGGTATTCGAGGAAGACACGGTGAAGA
TCCCGCGATAAGCTGACGCG

Downstream 100 bases:

>100_bases
GCGAGGCGCGCGCCTATTCGCTGCGGCGGCGGCTGGTCGGGCTGCTGACGGCTGCGATCGCGCTGGTCTGGCTGCTGTCG
GCGCTATTCGTCTACGCGCG

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGLSVLQWLRGRGDPTPVLVLTA
RDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAHGKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHV
LLQSSGHVLTRRMLEEQLYTWDEGVGSNALEVHVHHLRRKLGNDVIRTVRGVGYMAAPPT

Sequences:

>Translated_220_residues
MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGLSVLQWLRGRGDPTPVLVLTA
RDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAHGKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHV
LLQSSGHVLTRRMLEEQLYTWDEGVGSNALEVHVHHLRRKLGNDVIRTVRGVGYMAAPPT
>Mature_220_residues
MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGLSVLQWLRGRGDPTPVLVLTA
RDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAHGKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHV
LLQSSGHVLTRRMLEEQLYTWDEGVGSNALEVHVHHLRRKLGNDVIRTVRGVGYMAAPPT

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. Currently it is not known whether this effect is direct or not [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=214, Percent_Identity=56.5420560747664, Blast_Score=242, Evalue=1e-65,
Organism=Escherichia coli, GI1790552, Length=215, Percent_Identity=45.1162790697674, Blast_Score=180, Evalue=8e-47,
Organism=Escherichia coli, GI1786784, Length=224, Percent_Identity=37.9464285714286, Blast_Score=148, Evalue=2e-37,
Organism=Escherichia coli, GI1787375, Length=219, Percent_Identity=38.3561643835616, Blast_Score=141, Evalue=3e-35,
Organism=Escherichia coli, GI87082012, Length=218, Percent_Identity=34.8623853211009, Blast_Score=140, Evalue=4e-35,
Organism=Escherichia coli, GI1786911, Length=219, Percent_Identity=37.8995433789954, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789809, Length=229, Percent_Identity=33.1877729257642, Blast_Score=122, Evalue=1e-29,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=36.5638766519824, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1790860, Length=219, Percent_Identity=36.0730593607306, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=34.0909090909091, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1788394, Length=222, Percent_Identity=33.7837837837838, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787229, Length=223, Percent_Identity=28.2511210762332, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790863, Length=226, Percent_Identity=27.4336283185841, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI145693140, Length=237, Percent_Identity=28.2700421940928, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=34.5794392523364, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1787487, Length=101, Percent_Identity=35.6435643564356, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790437, Length=122, Percent_Identity=31.1475409836066, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790299, Length=108, Percent_Identity=30.5555555555556, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24194; Mature: 24194

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGL
CEEEEECCCCHHCCCHHHCCCCCCCEEEEEECCCHHEEHHHHHHHHHHHHHCCCCCCCHH
SVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAH
HHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHC
GKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVLTRRMLEEQLYT
CCCCCEEEECCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
WDEGVGSNALEVHVHHLRRKLGNDVIRTVRGVGYMAAPPT
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGL
CEEEEECCCCHHCCCHHHCCCCCCCEEEEEECCCHHEEHHHHHHHHHHHHHCCCCCCCHH
SVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAH
HHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHC
GKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVLTRRMLEEQLYT
CCCCCEEEECCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
WDEGVGSNALEVHVHHLRRKLGNDVIRTVRGVGYMAAPPT
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796; 11929534 [H]