| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is hldE [H]
Identifier: 74316123
GI number: 74316123
Start: 112581
End: 113060
Strand: Reverse
Name: hldE [H]
Synonym: Tbd_0105
Alternate gene names: 74316123
Gene position: 113060-112581 (Counterclockwise)
Preceding gene: 74316124
Following gene: 74316122
Centisome position: 3.89
GC content: 68.54
Gene sequence:
>480_bases GTGACGCAACTCGCCTTCGAGCGCAAGCTCTGCGCGCCCGGCGAACTCGCCGCGCGCGTGGCGCAGTTGCCGCGGCCGCT CGTCTTCACCAACGGCTGCTTCGACATTCTGCACCGCGGGCACGTGACCTATCTCGCCGAGGCGCGCGCACTCGGGGGCG CGTTGATCGTCGGCGTGAACTCCGATGCGTCGGTGCGTCGCCAGGACAAGGGCAGCGGCCGCCCGATCAACGGGCTCGAC GATCGCATGGCCCTGCTCGCGGCGCTCGAATCGGTGTCGCTCGTGACCTCGTTCGACGCGGACACACCGCTCGAACTGAT CCTCCGGATCCGGCCGGACATCCTCGTGAAAGGCGGCGACTGGCCACACGAGCGGATAGTCGGCGCGTCGGAAGTCGAGG ACTGGGGCGGCGCCGTCCATTCGATCCCTTTCCGGCACCAGACATCGACGACGGCGCTGCTGCAACGCATTCGCTCCTGA
Upstream 100 bases:
>100_bases TGATGGGACTCGTCACCGACAGCGAGGCCCACGAGGCGACCGAGATCGCGCGCACGACGGCGGGCGTGACCAAGGTCGTG ACCCTGTTCGAATACATCAA
Downstream 100 bases:
>100_bases ACGCCCGCAATGATCTATCACGACCTCCGAGACTTCGTCGCACAGCTCGAAAAAATGGGCGAGCTCAAGCGCATCGCCAC CGAAGTCGATCCCCGCCTCG
Product: cytidyltransferase
Products: NA
Alternate protein names: D-beta-D-heptose 7-phosphate kinase; D-beta-D-heptose 7-phosphotransferase; D-beta-D-heptose 1-phosphate adenosyltransferase [H]
Number of amino acids: Translated: 159; Mature: 158
Protein sequence:
>159_residues MTQLAFERKLCAPGELAARVAQLPRPLVFTNGCFDILHRGHVTYLAEARALGGALIVGVNSDASVRRQDKGSGRPINGLD DRMALLAALESVSLVTSFDADTPLELILRIRPDILVKGGDWPHERIVGASEVEDWGGAVHSIPFRHQTSTTALLQRIRS
Sequences:
>Translated_159_residues MTQLAFERKLCAPGELAARVAQLPRPLVFTNGCFDILHRGHVTYLAEARALGGALIVGVNSDASVRRQDKGSGRPINGLD DRMALLAALESVSLVTSFDADTPLELILRIRPDILVKGGDWPHERIVGASEVEDWGGAVHSIPFRHQTSTTALLQRIRS >Mature_158_residues TQLAFERKLCAPGELAARVAQLPRPLVFTNGCFDILHRGHVTYLAEARALGGALIVGVNSDASVRRQDKGSGRPINGLDD RMALLAALESVSLVTSFDADTPLELILRIRPDILVKGGDWPHERIVGASEVEDWGGAVHSIPFRHQTSTTALLQRIRS
Specific function: Catalyzes the ADP transfer to D-glycero-D-manno-heptose 1-phosphate, yielding ADP-D,D-heptose [H]
COG id: COG2870
COG function: function code M; ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the cytidylyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1789432, Length=132, Percent_Identity=54.5454545454545, Blast_Score=136, Evalue=7e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023030 - InterPro: IPR011611 - InterPro: IPR002173 - InterPro: IPR004821 - InterPro: IPR004820 - InterPro: IPR011913 - InterPro: IPR011914 - InterPro: IPR014729 [H]
Pfam domain/function: PF01467 CTP_transf_2; PF00294 PfkB [H]
EC number: 2.7.-.- [C]
Molecular weight: Translated: 17273; Mature: 17142
Theoretical pI: Translated: 7.64; Mature: 7.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQLAFERKLCAPGELAARVAQLPRPLVFTNGCFDILHRGHVTYLAEARALGGALIVGVN CCCCCCHHCCCCCHHHHHHHHHCCCCEEEECCHHHHHHCCCHHHHHHHHHCCCEEEEEEC SDASVRRQDKGSGRPINGLDDRMALLAALESVSLVTSFDADTPLELILRIRPDILVKGGD CCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHCCCCEEEECCC WPHERIVGASEVEDWGGAVHSIPFRHQTSTTALLQRIRS CCHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure TQLAFERKLCAPGELAARVAQLPRPLVFTNGCFDILHRGHVTYLAEARALGGALIVGVN CCCCCHHCCCCCHHHHHHHHHCCCCEEEECCHHHHHHCCCHHHHHHHHHCCCEEEEEEC SDASVRRQDKGSGRPINGLDDRMALLAALESVSLVTSFDADTPLELILRIRPDILVKGGD CCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHCCCCEEEECCC WPHERIVGASEVEDWGGAVHSIPFRHQTSTTALLQRIRS CCHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA