Click here to switch to the map view.

The map label for this gene is ubiD

Identifier: 74316122

GI number: 74316122

Start: 111108

End: 112571

Strand: Reverse

Name: ubiD

Synonym: Tbd_0104

Alternate gene names: 74316122

Gene position: 112571-111108 (Counterclockwise)

Preceding gene: 74316123

Following gene: 74316121

Centisome position: 3.87

GC content: 66.6

Gene sequence:

>1464_bases
ATGATCTATCACGACCTCCGAGACTTCGTCGCACAGCTCGAAAAAATGGGCGAGCTCAAGCGCATCGCCACCGAAGTCGA
TCCCCGCCTCGAAATGACCGAGATCGCCGACCGCGTGCTGCGTGCCGGCGGCCCGGCCCTGCTGTTCGAGCATCCGAAGG
GGCACCGCGTGCCCGTGCTCGCGAACCTGTTCGGCACGGTCAAGCGCGTGGCGCTCGGCATGGGCGAGGACGATCCGGCG
CGGCTGCGCGAGGTTGGCAAGCTGCTCGCTTACCTGAAGGAGCCCGAGCCGCCGAAGGGGCTGCGCGACGCCTGGGACAA
ATGGCCGGTGTTGAAGCAGGTGCTCAACATGGCACCGAAGGAGGTCCGCAGCGCGCCGTGCCAGGAAATGGTGTGGGAGG
GCAAGGACGTCGACTTGTCGCGCCTGCCGATCCAGCACTGCTGGCCCGGCGACGTCGCGCCGCTGATCACCTGGGGGCTG
ACAGTCACGCGCGGCCCGCACAAGAAGCGGCAGAACCTCGGCATCTACCGGCAGCAGGTGATCGGACCGAACAAGCTCAT
CATGCGCTGGCTCGCGCACCGCGGCGGCGCGCTGGACTTCCGTGAGCATCAGCAGGCGCATCCCGGCGAGGCCTTTCCGG
TCGCCGTCGCGCTCGGTGCCGACCCGGCGACGATCCTCGGCGCGGTGACGCCGGTGCCGGACACCCTCTCGGAATACCAG
TTCGCGGGGCTCCTGCGCGGCGCTAAGACCGAGGTCGTGCGCTGCCTCGGCAATACGCTGCAGGTGCCGGCATCGAGCGA
GATCGTGCTCGAAGGCGTGATCCATCCCGAAGAGACCGCCTTGGAAGGTCCGTACGGCGACCACACCGGCTACTACAACG
AGCAGGAGACCTTCCCGGTCTTCACGGTCGAGCGCATCACGATGCGGCGCGATCCGATCTACCACAGCACCTACACCGGC
AAGCCGCCCGACGAGCCGGCGATCCTCGGCGTCGCGCTCAACGAGGTCTTCGTGCCGCTCTTGCAGAAGCAGTTTCCCGA
GATCGTCGATTTCTACCTGCCGCCCGAGGGCTGCTCGTACCGGATGGCGGTCGTGTCGATGAAGAAGGCCTATCCGGGCC
ACGCCAAGCGCGTGATGTTCGGCGTCTGGTCCTTCCTGCGCCAGTTCATGTACACCAAGTTCATCCTCGTCACCGACGAC
GACGTCGACGTGCGCGACTGGAAGGAAGTCATGTGGGCGCTGACGACGCGCGTCGACCCCGCGCGCGACACGCTGCTCGT
CGAAAACACGCCGATCGACTACCTCGACTTCGCCAGCCCGGTGTCGGGGCTCGGCAGCAAGATGGGCATCGATGCGACGA
ACAAATGGCCCGGCGAAACCCAGCGCGAATGGGGCACGCCGATCACGATGGATGCCGCGGTCAAGGCGCGCGTCGACGCG
ATCTGGCAGGATCTCGGCCTCTAG

Upstream 100 bases:

>100_bases
GGAAGTCGAGGACTGGGGCGGCGCCGTCCATTCGATCCCTTTCCGGCACCAGACATCGACGACGGCGCTGCTGCAACGCA
TTCGCTCCTGAACGCCCGCA

Downstream 100 bases:

>100_bases
ATGAAACGCAGTGCGCACCCCCTCGCCGACGCTCGTTGCCGCCGGGACGCGCCCGGCGCGCCCGACCGAGGTCTAATCGG
ATGAGCGAAAAACCCGCAGG

Product: 3-octaprenyl-4hydroxybenzoate decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MIYHDLRDFVAQLEKMGELKRIATEVDPRLEMTEIADRVLRAGGPALLFEHPKGHRVPVLANLFGTVKRVALGMGEDDPA
RLREVGKLLAYLKEPEPPKGLRDAWDKWPVLKQVLNMAPKEVRSAPCQEMVWEGKDVDLSRLPIQHCWPGDVAPLITWGL
TVTRGPHKKRQNLGIYRQQVIGPNKLIMRWLAHRGGALDFREHQQAHPGEAFPVAVALGADPATILGAVTPVPDTLSEYQ
FAGLLRGAKTEVVRCLGNTLQVPASSEIVLEGVIHPEETALEGPYGDHTGYYNEQETFPVFTVERITMRRDPIYHSTYTG
KPPDEPAILGVALNEVFVPLLQKQFPEIVDFYLPPEGCSYRMAVVSMKKAYPGHAKRVMFGVWSFLRQFMYTKFILVTDD
DVDVRDWKEVMWALTTRVDPARDTLLVENTPIDYLDFASPVSGLGSKMGIDATNKWPGETQREWGTPITMDAAVKARVDA
IWQDLGL

Sequences:

>Translated_487_residues
MIYHDLRDFVAQLEKMGELKRIATEVDPRLEMTEIADRVLRAGGPALLFEHPKGHRVPVLANLFGTVKRVALGMGEDDPA
RLREVGKLLAYLKEPEPPKGLRDAWDKWPVLKQVLNMAPKEVRSAPCQEMVWEGKDVDLSRLPIQHCWPGDVAPLITWGL
TVTRGPHKKRQNLGIYRQQVIGPNKLIMRWLAHRGGALDFREHQQAHPGEAFPVAVALGADPATILGAVTPVPDTLSEYQ
FAGLLRGAKTEVVRCLGNTLQVPASSEIVLEGVIHPEETALEGPYGDHTGYYNEQETFPVFTVERITMRRDPIYHSTYTG
KPPDEPAILGVALNEVFVPLLQKQFPEIVDFYLPPEGCSYRMAVVSMKKAYPGHAKRVMFGVWSFLRQFMYTKFILVTDD
DVDVRDWKEVMWALTTRVDPARDTLLVENTPIDYLDFASPVSGLGSKMGIDATNKWPGETQREWGTPITMDAAVKARVDA
IWQDLGL
>Mature_487_residues
MIYHDLRDFVAQLEKMGELKRIATEVDPRLEMTEIADRVLRAGGPALLFEHPKGHRVPVLANLFGTVKRVALGMGEDDPA
RLREVGKLLAYLKEPEPPKGLRDAWDKWPVLKQVLNMAPKEVRSAPCQEMVWEGKDVDLSRLPIQHCWPGDVAPLITWGL
TVTRGPHKKRQNLGIYRQQVIGPNKLIMRWLAHRGGALDFREHQQAHPGEAFPVAVALGADPATILGAVTPVPDTLSEYQ
FAGLLRGAKTEVVRCLGNTLQVPASSEIVLEGVIHPEETALEGPYGDHTGYYNEQETFPVFTVERITMRRDPIYHSTYTG
KPPDEPAILGVALNEVFVPLLQKQFPEIVDFYLPPEGCSYRMAVVSMKKAYPGHAKRVMFGVWSFLRQFMYTKFILVTDD
DVDVRDWKEVMWALTTRVDPARDTLLVENTPIDYLDFASPVSGLGSKMGIDATNKWPGETQREWGTPITMDAAVKARVDA
IWQDLGL

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family

Homologues:

Organism=Escherichia coli, GI1790277, Length=487, Percent_Identity=76.5913757700205, Blast_Score=784, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=454, Percent_Identity=26.2114537444934, Blast_Score=137, Evalue=6e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UBID_THIDA (Q3SMI8)

Other databases:

- EMBL:   CP000116
- RefSeq:   YP_313862.1
- ProteinModelPortal:   Q3SMI8
- SMR:   Q3SMI8
- STRING:   Q3SMI8
- GeneID:   3673882
- GenomeReviews:   CP000116_GR
- KEGG:   tbd:Tbd_0104
- NMPDR:   fig|292415.3.peg.1003
- eggNOG:   COG0043
- HOGENOM:   HBG564733
- OMA:   LNRIYTP
- PhylomeDB:   Q3SMI8
- BioCyc:   TDEN292415:TBD_0104-MONOMER
- HAMAP:   MF_01636
- InterPro:   IPR002830
- InterPro:   IPR009002
- TIGRFAMs:   TIGR00148

Pfam domain/function: PF01977 UbiD; SSF50475 FMN_binding

EC number: 4.1.1.-

Molecular weight: Translated: 54659; Mature: 54659

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS00024 HEMOPEXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYHDLRDFVAQLEKMGELKRIATEVDPRLEMTEIADRVLRAGGPALLFEHPKGHRVPVL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
ANLFGTVKRVALGMGEDDPARLREVGKLLAYLKEPEPPKGLRDAWDKWPVLKQVLNMAPK
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHCCHH
EVRSAPCQEMVWEGKDVDLSRLPIQHCWPGDVAPLITWGLTVTRGPHKKRQNLGIYRQQV
HHHCCCHHHHHHCCCCCCHHHCCHHHCCCCCCHHHHHHCEEECCCCCHHHHHCCHHHHHH
IGPNKLIMRWLAHRGGALDFREHQQAHPGEAFPVAVALGADPATILGAVTPVPDTLSEYQ
CCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEEEECCCHHHHHHCCCCCCHHHHHHH
FAGLLRGAKTEVVRCLGNTLQVPASSEIVLEGVIHPEETALEGPYGDHTGYYNEQETFPV
HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHCCCCCCCCCCCCCCCCCCCCE
FTVERITMRRDPIYHSTYTGKPPDEPAILGVALNEVFVPLLQKQFPEIVDFYLPPEGCSY
EEHHHHHHHCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
RMAVVSMKKAYPGHAKRVMFGVWSFLRQFMYTKFILVTDDDVDVRDWKEVMWALTTRVDP
EHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCC
ARDTLLVENTPIDYLDFASPVSGLGSKMGIDATNKWPGETQREWGTPITMDAAVKARVDA
CCCEEEEECCCCCHHHHHCHHHHCCCCCCCCCCCCCCCCCHHHCCCCEEEHHHHHHHHHH
IWQDLGL
HHHHHCC
>Mature Secondary Structure
MIYHDLRDFVAQLEKMGELKRIATEVDPRLEMTEIADRVLRAGGPALLFEHPKGHRVPVL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
ANLFGTVKRVALGMGEDDPARLREVGKLLAYLKEPEPPKGLRDAWDKWPVLKQVLNMAPK
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHCCHH
EVRSAPCQEMVWEGKDVDLSRLPIQHCWPGDVAPLITWGLTVTRGPHKKRQNLGIYRQQV
HHHCCCHHHHHHCCCCCCHHHCCHHHCCCCCCHHHHHHCEEECCCCCHHHHHCCHHHHHH
IGPNKLIMRWLAHRGGALDFREHQQAHPGEAFPVAVALGADPATILGAVTPVPDTLSEYQ
CCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEEEECCCHHHHHHCCCCCCHHHHHHH
FAGLLRGAKTEVVRCLGNTLQVPASSEIVLEGVIHPEETALEGPYGDHTGYYNEQETFPV
HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHCCCCCCCCCCCCCCCCCCCCE
FTVERITMRRDPIYHSTYTGKPPDEPAILGVALNEVFVPLLQKQFPEIVDFYLPPEGCSY
EEHHHHHHHCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
RMAVVSMKKAYPGHAKRVMFGVWSFLRQFMYTKFILVTDDDVDVRDWKEVMWALTTRVDP
EHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCC
ARDTLLVENTPIDYLDFASPVSGLGSKMGIDATNKWPGETQREWGTPITMDAAVKARVDA
CCCEEEEECCCCCHHHHHCHHHHCCCCCCCCCCCCCCCCCHHHCCCCEEEHHHHHHHHHH
IWQDLGL
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA