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The map label for this gene is nirS [H]

Identifier: 74316088

GI number: 74316088

Start: 72194

End: 73747

Strand: Reverse

Name: nirS [H]

Synonym: Tbd_0070

Alternate gene names: 74316088

Gene position: 73747-72194 (Counterclockwise)

Preceding gene: 74316089

Following gene: 74316087

Centisome position: 2.53

GC content: 65.38

Gene sequence:

>1554_bases
ATGCAGCACTTTTCCCGCCTCTGCATGCTTGCCGCCGCCCTGCTGGCAAGCTCGCCCGCGTCCGCCGCCGAACCGGTGCC
CGCGGTCTACGCCCGACACTGCGCCAGCTGCCACGGCATCGACCGCCTCGGCGGCACCGGCCCTGCGCTGCTGCCGGAAA
ACCTGGAACGGCTGCGCAAACCCGAGGCGCTGAAAGTCATCGCCAATGGCCGCGCCGCTTCGCAGATGATGGCCTTCGGC
GACAAGCTCTCTGCCGCCGAGATCCAGGCGCTGACGGATTTCGTCTACACGCCGCCCGCCAGCGTGCCCGTCTGGGGACT
CGCCGAGATCAAGGCGTCGCGCATCGAGAATTTCAAGGCTGGCAGCCTGCCGGACACACCCGCATTCAAGGCCGACCTGC
TCAACCTCTTCGTGGTGGTGGAAACCGGCGACCACCACGCCACCCTCCTCGACGGCGACAGCTTCAAACCCATCCACCGC
TTCCAGACCCGCTTCGCCCTGCACGGCGGGCCGAAGTTCACGCCCGACGGGCGCTATGTCTATTTCGCCTCGCGCGATGG
CTGGATTGCCAAGTTCGACATCTGGAACCTCAAGATCACGCACGAGATCCGCGCCGGCATCAACACCCGCAACCTCGCCG
TGTCGGGCGACGGGCGTTACGTGATCGTCGGCAACTATCTGCCGCAGACCCTGGTCGTGCTCGATGCGGCCGACCTCACG
CCGCTCAAGCTGATCGAGGCGAAGGACGACACCGGCAAGCGCTCGCGCGTTTCCGCGGTCTATGATGCGGCGCCGCGCAA
GAGCTTCATCGCCGCGCTGAAGGACGTCAAGGAGGTCTGGGAGATCCCCTACACCGACGAGCACGAGCCGATCTTCCCGG
GGCTGGTGCACGATTTCCGCATGGCCGAAGCACTCGCCGACAAGGGGCCGTTCCCGGTCCGCCGCATCCCGCTCGACGAC
TACCTCGACGATTTCTATTTCGACCAACCCTACCAGCACCTGATGGGCGCCTCGCGCGAGGGCGGCAAGGGTCAGGTCGT
CAACCTCGACGCGCGCATCAAGGTCGCCGACCTCGACATCCCGGGCATGCCGCACCTCGGTTCCGGCATCACCTGGGATT
ACCAGGGCCGCCCGGTGATGGCGACACCGAACCTCAAGTCCGGCGTGATCAGCATCATCGACATGAAGAACTGGAAGGTG
ATCAAGCGGGTCGAAACGCTCGGCTCGGGCTTCTTCATGCGCAGCCACGAGAACACGCCCTACGCCTGGACCGACAATTT
CATGAGCCCGGCCAAGGACACGCTGACGATCATCGACAAGCGCACGCTCGAGGTCGCGCGCAACCTGACCCCGGAGCCCG
GGAAGACCGCGGCGCACGTCGAGTTCACCCGCGACGGCAGGTACGCGCTCGTCAGCATCTGGGAAATGGACGGCGCCTTG
ATCGTCTACGACGCGGCGACCTTCAAGGAAGTCAAACGCCTGCCGATGAGCAAGCCCTCGGGCAAGTACAACGTCTACAA
CAAGACGACACGCTCGGCCGGCACGAGCCACTGA

Upstream 100 bases:

>100_bases
ACCCCGCCTGCTACCTCGACGACGAGGAGATCGGGGTCACCACACCGCACGAGCGGCTGACCGTGACGCCCTATGTGCCG
CTGCGGCGGGTGGCGCGCTG

Downstream 100 bases:

>100_bases
GCGACGGCGCCGTCGCGTTCGCTCGCCCGCCTGGCGGCCCACCTGCTAGGCTGAAGCATGTCAGAGCCCAAGCCCGAGCG
CAGCATCATCGTGATCGGCG

Product: nitrite reductase

Products: NA

Alternate protein names: Cytochrome cd1; Cytochrome oxidase; Hydroxylamine reductase [H]

Number of amino acids: Translated: 517; Mature: 517

Protein sequence:

>517_residues
MQHFSRLCMLAAALLASSPASAAEPVPAVYARHCASCHGIDRLGGTGPALLPENLERLRKPEALKVIANGRAASQMMAFG
DKLSAAEIQALTDFVYTPPASVPVWGLAEIKASRIENFKAGSLPDTPAFKADLLNLFVVVETGDHHATLLDGDSFKPIHR
FQTRFALHGGPKFTPDGRYVYFASRDGWIAKFDIWNLKITHEIRAGINTRNLAVSGDGRYVIVGNYLPQTLVVLDAADLT
PLKLIEAKDDTGKRSRVSAVYDAAPRKSFIAALKDVKEVWEIPYTDEHEPIFPGLVHDFRMAEALADKGPFPVRRIPLDD
YLDDFYFDQPYQHLMGASREGGKGQVVNLDARIKVADLDIPGMPHLGSGITWDYQGRPVMATPNLKSGVISIIDMKNWKV
IKRVETLGSGFFMRSHENTPYAWTDNFMSPAKDTLTIIDKRTLEVARNLTPEPGKTAAHVEFTRDGRYALVSIWEMDGAL
IVYDAATFKEVKRLPMSKPSGKYNVYNKTTRSAGTSH

Sequences:

>Translated_517_residues
MQHFSRLCMLAAALLASSPASAAEPVPAVYARHCASCHGIDRLGGTGPALLPENLERLRKPEALKVIANGRAASQMMAFG
DKLSAAEIQALTDFVYTPPASVPVWGLAEIKASRIENFKAGSLPDTPAFKADLLNLFVVVETGDHHATLLDGDSFKPIHR
FQTRFALHGGPKFTPDGRYVYFASRDGWIAKFDIWNLKITHEIRAGINTRNLAVSGDGRYVIVGNYLPQTLVVLDAADLT
PLKLIEAKDDTGKRSRVSAVYDAAPRKSFIAALKDVKEVWEIPYTDEHEPIFPGLVHDFRMAEALADKGPFPVRRIPLDD
YLDDFYFDQPYQHLMGASREGGKGQVVNLDARIKVADLDIPGMPHLGSGITWDYQGRPVMATPNLKSGVISIIDMKNWKV
IKRVETLGSGFFMRSHENTPYAWTDNFMSPAKDTLTIIDKRTLEVARNLTPEPGKTAAHVEFTRDGRYALVSIWEMDGAL
IVYDAATFKEVKRLPMSKPSGKYNVYNKTTRSAGTSH
>Mature_517_residues
MQHFSRLCMLAAALLASSPASAAEPVPAVYARHCASCHGIDRLGGTGPALLPENLERLRKPEALKVIANGRAASQMMAFG
DKLSAAEIQALTDFVYTPPASVPVWGLAEIKASRIENFKAGSLPDTPAFKADLLNLFVVVETGDHHATLLDGDSFKPIHR
FQTRFALHGGPKFTPDGRYVYFASRDGWIAKFDIWNLKITHEIRAGINTRNLAVSGDGRYVIVGNYLPQTLVVLDAADLT
PLKLIEAKDDTGKRSRVSAVYDAAPRKSFIAALKDVKEVWEIPYTDEHEPIFPGLVHDFRMAEALADKGPFPVRRIPLDD
YLDDFYFDQPYQHLMGASREGGKGQVVNLDARIKVADLDIPGMPHLGSGITWDYQGRPVMATPNLKSGVISIIDMKNWKV
IKRVETLGSGFFMRSHENTPYAWTDNFMSPAKDTLTIIDKRTLEVARNLTPEPGKTAAHVEFTRDGRYALVSIWEMDGAL
IVYDAATFKEVKRLPMSKPSGKYNVYNKTTRSAGTSH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR011048
- InterPro:   IPR003143 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: =1.7.2.1; =1.7.99.1 [H]

Molecular weight: Translated: 57156; Mature: 57156

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHFSRLCMLAAALLASSPASAAEPVPAVYARHCASCHGIDRLGGTGPALLPENLERLRK
CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHCC
PEALKVIANGRAASQMMAFGDKLSAAEIQALTDFVYTPPASVPVWGLAEIKASRIENFKA
CCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
GSLPDTPAFKADLLNLFVVVETGDHHATLLDGDSFKPIHRFQTRFALHGGPKFTPDGRYV
CCCCCCCCHHHEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHEEECCCCCCCCCCCEE
YFASRDGWIAKFDIWNLKITHEIRAGINTRNLAVSGDGRYVIVGNYLPQTLVVLDAADLT
EEECCCCCEEEEEEEEEEEEHHHHCCCCCCEEEEECCCCEEEECCCCCCEEEEEECCCCC
PLKLIEAKDDTGKRSRVSAVYDAAPRKSFIAALKDVKEVWEIPYTDEHEPIFPGLVHDFR
CEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
MAEALADKGPFPVRRIPLDDYLDDFYFDQPYQHLMGASREGGKGQVVNLDARIKVADLDI
HHHHHHCCCCCCEEECCHHHHHHHHHCCCHHHHHCCCCCCCCCCCEEEECCEEEEEECCC
PGMPHLGSGITWDYQGRPVMATPNLKSGVISIIDMKNWKVIKRVETLGSGFFMRSHENTP
CCCCCCCCCCEECCCCCEEEECCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEECCCCCC
YAWTDNFMSPAKDTLTIIDKRTLEVARNLTPEPGKTAAHVEFTRDGRYALVSIWEMDGAL
EEECCCCCCCCCHHEEEHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECCCEE
IVYDAATFKEVKRLPMSKPSGKYNVYNKTTRSAGTSH
EEEECHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCC
>Mature Secondary Structure
MQHFSRLCMLAAALLASSPASAAEPVPAVYARHCASCHGIDRLGGTGPALLPENLERLRK
CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHCC
PEALKVIANGRAASQMMAFGDKLSAAEIQALTDFVYTPPASVPVWGLAEIKASRIENFKA
CCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
GSLPDTPAFKADLLNLFVVVETGDHHATLLDGDSFKPIHRFQTRFALHGGPKFTPDGRYV
CCCCCCCCHHHEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHEEECCCCCCCCCCCEE
YFASRDGWIAKFDIWNLKITHEIRAGINTRNLAVSGDGRYVIVGNYLPQTLVVLDAADLT
EEECCCCCEEEEEEEEEEEEHHHHCCCCCCEEEEECCCCEEEECCCCCCEEEEEECCCCC
PLKLIEAKDDTGKRSRVSAVYDAAPRKSFIAALKDVKEVWEIPYTDEHEPIFPGLVHDFR
CEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
MAEALADKGPFPVRRIPLDDYLDDFYFDQPYQHLMGASREGGKGQVVNLDARIKVADLDI
HHHHHHCCCCCCEEECCHHHHHHHHHCCCHHHHHCCCCCCCCCCCEEEECCEEEEEECCC
PGMPHLGSGITWDYQGRPVMATPNLKSGVISIIDMKNWKVIKRVETLGSGFFMRSHENTP
CCCCCCCCCCEECCCCCEEEECCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEECCCCCC
YAWTDNFMSPAKDTLTIIDKRTLEVARNLTPEPGKTAAHVEFTRDGRYALVSIWEMDGAL
EEECCCCCCCCCHHEEEHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECCCEE
IVYDAATFKEVKRLPMSKPSGKYNVYNKTTRSAGTSH
EEEECHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2506077; 10984043; 2155133; 2152881; 9331415; 9760233; 10329702; 11226222; 11563915 [H]