Click here to switch to the map view.

The map label for this gene is smf [H]

Identifier: 74316030

GI number: 74316030

Start: 11993

End: 12955

Strand: Reverse

Name: smf [H]

Synonym: Tbd_0012

Alternate gene names: 74316030

Gene position: 12955-11993 (Counterclockwise)

Preceding gene: 74316031

Following gene: 74316029

Centisome position: 0.45

GC content: 72.9

Gene sequence:

>963_bases
TTGACGTCGGGCCGCAGCGCGCTCGCCGCCCATCTTTCCTCCGCGCAGTGCGACGCGGTGCTCGGCGCGCCCGATCCCGC
GCAGCTCGACGCCGCGCTCGCCTGGCTCGAGCAGCCGGGCAACTCGCTCATGACGCTCGGCGACGCGGACTATCCCGCCG
CGCTGCTCGAGATCGCCGATCCGCCGGCCGTCCTCTACTGCAAGGGCCGCCGCGAACTCCTGGGCCGGCCCGCGCTCGGC
ATCGTCGGCAGCCGCAACGCCACGCCGCAGGGGCTGCGTGACGCCGAGGCCTTCGCGCTCGCGCTCTCGAACGCAGGACT
CACGGTGATCAGCGGCCTCGCGCTCGGGATCGACGCCGCGGCGCACCGCGGTGGCCTGGCCGGCGCCGCGTCGAGCGTCG
CCGTCATCGGCACCGGCCTCGACCGCATCTACCCGGCGCGCAACAAGGCGCTCGCCCACGAACTCGCCGCGAACGGCCTG
GTCGTCTCCGAGTTCGCACTCGGCACGCCGCCGCTGCCCGGCCACTTCCCCCGCCGCAACCGCCTGATCAGCGGCCTGAG
CCGCGGCGTGCTCGTGGTCGAGGCCGCGCCCGACAGCGGCTCGCTGATCACCGCGCGCGTCGCGGCCGAGCAGGGGCGCG
AGGTGTTCGCGATCCCCGGATCGATCCACTCGCCGCTCGCGCGCGGCTGCCATGCGCTGATCAAGCAGGGCGCCAAGCTC
GTCGAATCGGCCGCCGACGTGCTCGACGAACTCGCGTGGCAGCAGCGACTCTCACCGCCGGTGCTGCCGGAAAGCGAGCC
CGATCCGGTCCTCGACGCCCTCGACGGCGCGCCGACGACGCTCGATTCGCTAGCGCAAAAGACCGGGTTGACGCTAGATG
CGCTTTCCGCCAAGCTGTTGGCGCTCGAACTGGACGGTCGCATCGCGGCCCTGCCCGGCGGGCGTTACCAGAAAATTCAC
TGA

Upstream 100 bases:

>100_bases
GAGCGCGACCGAGGTCTGGCTGCGTCTGGCCCTCGCCCCGGGGGTCGGCAACGCGGCGCTGCTTCGCCTGCTGACGGCCT
TCGGTTCACCGGAGGCCGTT

Downstream 100 bases:

>100_bases
CATCATGCTCGACATCCTCGTCTACCTCTACGAAAGCTTCCGCATGGCGGAGCTCGCGCCCGACCGCGACGCTCTCGAAA
AGCGCCTGTTCGCCGCGGGG

Product: SMF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MTSGRSALAAHLSSAQCDAVLGAPDPAQLDAALAWLEQPGNSLMTLGDADYPAALLEIADPPAVLYCKGRRELLGRPALG
IVGSRNATPQGLRDAEAFALALSNAGLTVISGLALGIDAAAHRGGLAGAASSVAVIGTGLDRIYPARNKALAHELAANGL
VVSEFALGTPPLPGHFPRRNRLISGLSRGVLVVEAAPDSGSLITARVAAEQGREVFAIPGSIHSPLARGCHALIKQGAKL
VESAADVLDELAWQQRLSPPVLPESEPDPVLDALDGAPTTLDSLAQKTGLTLDALSAKLLALELDGRIAALPGGRYQKIH

Sequences:

>Translated_320_residues
MTSGRSALAAHLSSAQCDAVLGAPDPAQLDAALAWLEQPGNSLMTLGDADYPAALLEIADPPAVLYCKGRRELLGRPALG
IVGSRNATPQGLRDAEAFALALSNAGLTVISGLALGIDAAAHRGGLAGAASSVAVIGTGLDRIYPARNKALAHELAANGL
VVSEFALGTPPLPGHFPRRNRLISGLSRGVLVVEAAPDSGSLITARVAAEQGREVFAIPGSIHSPLARGCHALIKQGAKL
VESAADVLDELAWQQRLSPPVLPESEPDPVLDALDGAPTTLDSLAQKTGLTLDALSAKLLALELDGRIAALPGGRYQKIH
>Mature_319_residues
TSGRSALAAHLSSAQCDAVLGAPDPAQLDAALAWLEQPGNSLMTLGDADYPAALLEIADPPAVLYCKGRRELLGRPALGI
VGSRNATPQGLRDAEAFALALSNAGLTVISGLALGIDAAAHRGGLAGAASSVAVIGTGLDRIYPARNKALAHELAANGLV
VSEFALGTPPLPGHFPRRNRLISGLSRGVLVVEAAPDSGSLITARVAAEQGREVFAIPGSIHSPLARGCHALIKQGAKLV
ESAADVLDELAWQQRLSPPVLPESEPDPVLDALDGAPTTLDSLAQKTGLTLDALSAKLLALELDGRIAALPGGRYQKIH

Specific function: Unknown

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=316, Percent_Identity=43.3544303797468, Blast_Score=209, Evalue=1e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 32756; Mature: 32625

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSGRSALAAHLSSAQCDAVLGAPDPAQLDAALAWLEQPGNSLMTLGDADYPAALLEIAD
CCCCHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHEEECC
PPAVLYCKGRRELLGRPALGIVGSRNATPQGLRDAEAFALALSNAGLTVISGLALGIDAA
CCEEEEECCCHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AHRGGLAGAASSVAVIGTGLDRIYPARNKALAHELAANGLVVSEFALGTPPLPGHFPRRN
HHCCCCCCCCCCEEEEECCHHHHCCCHHHHHHHHHHHCCEEEEHHCCCCCCCCCCCCHHH
RLISGLSRGVLVVEAAPDSGSLITARVAAEQGREVFAIPGSIHSPLARGCHALIKQGAKL
HHHHHHCCCEEEEEECCCCCCEEEEEEHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
VESAADVLDELAWQQRLSPPVLPESEPDPVLDALDGAPTTLDSLAQKTGLTLDALSAKLL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCHHHHCCEEE
ALELDGRIAALPGGRYQKIH
EEEECCEEEECCCCCCCCCC
>Mature Secondary Structure 
TSGRSALAAHLSSAQCDAVLGAPDPAQLDAALAWLEQPGNSLMTLGDADYPAALLEIAD
CCCHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHEEECC
PPAVLYCKGRRELLGRPALGIVGSRNATPQGLRDAEAFALALSNAGLTVISGLALGIDAA
CCEEEEECCCHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AHRGGLAGAASSVAVIGTGLDRIYPARNKALAHELAANGLVVSEFALGTPPLPGHFPRRN
HHCCCCCCCCCCEEEEECCHHHHCCCHHHHHHHHHHHCCEEEEHHCCCCCCCCCCCCHHH
RLISGLSRGVLVVEAAPDSGSLITARVAAEQGREVFAIPGSIHSPLARGCHALIKQGAKL
HHHHHHCCCEEEEEECCCCCCEEEEEEHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
VESAADVLDELAWQQRLSPPVLPESEPDPVLDALDGAPTTLDSLAQKTGLTLDALSAKLL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCHHHHCCEEE
ALELDGRIAALPGGRYQKIH
EEEECCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432722; 8112305; 9278503 [H]