| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74316026
Identifier: 74316026
GI number: 74316026
Start: 7358
End: 8500
Strand: Reverse
Name: 74316026
Synonym: Tbd_0008
Alternate gene names: NA
Gene position: 8500-7358 (Counterclockwise)
Preceding gene: 74316027
Following gene: 74316025
Centisome position: 0.29
GC content: 65.79
Gene sequence:
>1143_bases ATGCGCTTCACCCTTTTGCCGCTCGTGCTGGTTTCCGCGCTCGCGCAGGCCGAGCCGCTGACCCTCGGCGTCGTGCTCGA TCAGAACGAATCGATCAGCGACACGCAGACCAATCAACGCTATCGCGCCTTCGTCCGCGACGTCGAGCGCGCGGTCGGCC AGCCGGTCCGCATGCAGTACTACACACGCGGATTCTCGGCGATCAAGCATGCCAAGGACGGCACGCTCGACATGGTTTTC GGCCCGGCCCAGGTGATCGCCAACATCGGCAAGTTCAAGTTCGAGCCGATCCTCAAGTCGGGCGAAACGGCCGCGGCGGC CTTCGTCGCCGGTCCCGCATACAAGGGTCAGCTCGCCGCGCGCTCGGGGGCACGTCTCGGCGTTCCCGACTACGAGTCGC TGATGGGCGGCATGGCGCGCAGCGAAATCAACAGCCGCGGCCTCAGCAAGCGCGATTTTTCGGAGATCAAGTTCCATCGC ATGGCGGAAGCGCCGCTGTACGGCTTGAAGCTCGGCCGCTACGACCTCGCGGTCGCGTCGGCCGAGGAGGCGAAAGCGTG GACGGCAAGCAATGGCGGCCGCATCGTCTTCACGACCGCGGCCGTGCCGCTGCGCGCGCTTTCGGTCCAGCCCGAGCGGG TGGACGCCGGAATGCGACAGAAGCTCGCGGCCGGGTTGACGAAAAACAACAGCCTTCAGCTTGCGCTCGCCGGCGCGAGC AAGGCCGACTTCAAGAGCGTCGCGTCGATGCTCAACACCACGCCGACGGTCCTGCCCGGCGCCAAGGTCATCGGCGCCGC CCAGACGCGCGAGCTGATGGCGCAGGGCGTCCCGGTCTACGACGTGCGGGTCGGCGAGGAATACGCCGTGGCGCACGTCC CTGGGGCCATCTCGGTGCCCTACAAGGAAGGCAGCGCCAAGGAAGTCGGCTTCGACGCGGCGGACGACCAGTTCGCGCTC AACAAGCTGCCCAAGGACAAGAACGCGCCCTTCATCATGTATTGCGACGGCACGATCTGCTGGAAGAGCTATAAATCTGC GGTGATGGCGATCCAGGCCGGCTGGAAGAACGTCTACTGGTTCCGCGGCGGCTTCCCGGAATGGAAGGAAGCCGGCATGC CCGTGATCGCCCGCAAGGAATAA
Upstream 100 bases:
>100_bases GCAATGGCTGCACGAGACGACCGCCGCGGATTGAACGAAAACTAAACTTTGTTCGGCCGCAGGCCGTTAATTCCGCACGC CAATAAGAACGGAGACGATC
Downstream 100 bases:
>100_bases GCGTCCGCGATGAACTATAAAAACCACACGGGACACAAACAGGCCCTTGTTTTGGTGCGCCAGTTCGATCAAGATTGGCG CGGGAAGGTCGTTAACCCAT
Product: rhodanese-like protein
Products: NA
Alternate protein names: Rhodanese Domain Protein; Methyl-Accepting Chemotaxis Protein Signaling Domain; Rhodanese-Like Protein
Number of amino acids: Translated: 380; Mature: 380
Protein sequence:
>380_residues MRFTLLPLVLVSALAQAEPLTLGVVLDQNESISDTQTNQRYRAFVRDVERAVGQPVRMQYYTRGFSAIKHAKDGTLDMVF GPAQVIANIGKFKFEPILKSGETAAAAFVAGPAYKGQLAARSGARLGVPDYESLMGGMARSEINSRGLSKRDFSEIKFHR MAEAPLYGLKLGRYDLAVASAEEAKAWTASNGGRIVFTTAAVPLRALSVQPERVDAGMRQKLAAGLTKNNSLQLALAGAS KADFKSVASMLNTTPTVLPGAKVIGAAQTRELMAQGVPVYDVRVGEEYAVAHVPGAISVPYKEGSAKEVGFDAADDQFAL NKLPKDKNAPFIMYCDGTICWKSYKSAVMAIQAGWKNVYWFRGGFPEWKEAGMPVIARKE
Sequences:
>Translated_380_residues MRFTLLPLVLVSALAQAEPLTLGVVLDQNESISDTQTNQRYRAFVRDVERAVGQPVRMQYYTRGFSAIKHAKDGTLDMVF GPAQVIANIGKFKFEPILKSGETAAAAFVAGPAYKGQLAARSGARLGVPDYESLMGGMARSEINSRGLSKRDFSEIKFHR MAEAPLYGLKLGRYDLAVASAEEAKAWTASNGGRIVFTTAAVPLRALSVQPERVDAGMRQKLAAGLTKNNSLQLALAGAS KADFKSVASMLNTTPTVLPGAKVIGAAQTRELMAQGVPVYDVRVGEEYAVAHVPGAISVPYKEGSAKEVGFDAADDQFAL NKLPKDKNAPFIMYCDGTICWKSYKSAVMAIQAGWKNVYWFRGGFPEWKEAGMPVIARKE >Mature_380_residues MRFTLLPLVLVSALAQAEPLTLGVVLDQNESISDTQTNQRYRAFVRDVERAVGQPVRMQYYTRGFSAIKHAKDGTLDMVF GPAQVIANIGKFKFEPILKSGETAAAAFVAGPAYKGQLAARSGARLGVPDYESLMGGMARSEINSRGLSKRDFSEIKFHR MAEAPLYGLKLGRYDLAVASAEEAKAWTASNGGRIVFTTAAVPLRALSVQPERVDAGMRQKLAAGLTKNNSLQLALAGAS KADFKSVASMLNTTPTVLPGAKVIGAAQTRELMAQGVPVYDVRVGEEYAVAHVPGAISVPYKEGSAKEVGFDAADDQFAL NKLPKDKNAPFIMYCDGTICWKSYKSAVMAIQAGWKNVYWFRGGFPEWKEAGMPVIARKE
Specific function: Unknown
COG id: COG0607
COG function: function code P; Rhodanese-related sulfurtransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41082; Mature: 41082
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: PS00380 RHODANESE_1 ; PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFTLLPLVLVSALAQAEPLTLGVVLDQNESISDTQTNQRYRAFVRDVERAVGQPVRMQY CCEEHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEHH YTRGFSAIKHAKDGTLDMVFGPAQVIANIGKFKFEPILKSGETAAAAFVAGPAYKGQLAA HHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCEECHHHCCCCCCEEEEEECCCCCCCHHH RSGARLGVPDYESLMGGMARSEINSRGLSKRDFSEIKFHRMAEAPLYGLKLGRYDLAVAS CCCCCCCCCCHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEECCEEEEEEC AEEAKAWTASNGGRIVFTTAAVPLRALSVQPERVDAGMRQKLAAGLTKNNSLQLALAGAS CHHHCEEECCCCCEEEEEECCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCC KADFKSVASMLNTTPTVLPGAKVIGAAQTRELMAQGVPVYDVRVGEEYAVAHVPGAISVP CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCEECC YKEGSAKEVGFDAADDQFALNKLPKDKNAPFIMYCDGTICWKSYKSAVMAIQAGWKNVYW CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHEECCCCEEEE FRGGFPEWKEAGMPVIARKE EECCCCCHHHCCCCEEEECC >Mature Secondary Structure MRFTLLPLVLVSALAQAEPLTLGVVLDQNESISDTQTNQRYRAFVRDVERAVGQPVRMQY CCEEHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEHH YTRGFSAIKHAKDGTLDMVFGPAQVIANIGKFKFEPILKSGETAAAAFVAGPAYKGQLAA HHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCEECHHHCCCCCCEEEEEECCCCCCCHHH RSGARLGVPDYESLMGGMARSEINSRGLSKRDFSEIKFHRMAEAPLYGLKLGRYDLAVAS CCCCCCCCCCHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEECCEEEEEEC AEEAKAWTASNGGRIVFTTAAVPLRALSVQPERVDAGMRQKLAAGLTKNNSLQLALAGAS CHHHCEEECCCCCEEEEEECCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCC KADFKSVASMLNTTPTVLPGAKVIGAAQTRELMAQGVPVYDVRVGEEYAVAHVPGAISVP CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCEECC YKEGSAKEVGFDAADDQFALNKLPKDKNAPFIMYCDGTICWKSYKSAVMAIQAGWKNVYW CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHEECCCCEEEE FRGGFPEWKEAGMPVIARKE EECCCCCHHHCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA