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The map label for this gene is tdcF [C]

Identifier: 73539686

GI number: 73539686

Start: 2704559

End: 2704939

Strand: Direct

Name: tdcF [C]

Synonym: Reut_B5866

Alternate gene names: 73539686

Gene position: 2704559-2704939 (Clockwise)

Preceding gene: 73539685

Following gene: 73539687

Centisome position: 99.21

GC content: 56.69

Gene sequence:

>381_bases
ATGGAATTCCTGAATTCCGGCAAGGTCCTGCCCGCAGGACTGCCGTTCTCCGAAGCCGTCCGCATTGGCAATGTTGTCTA
CCTGTCAGGGCAGATGGGTATCGTGCCGGGCAGTACGCGCCTCGTGCCGGGCGGCATCCGGGAAGAAGCCAAGCAGGCGC
TTATGAATATCCGTACGACGCTGGAAGCCCATGGGCTGACGATGCGGGATGTCGCTAAATGCACGATCATGCTCGCGGAT
ATTAGTGAATGGCAGGTTTTTAACGAGGTCTATAAGGGGTTTTTTGAGCCCCCTTATCCGGTTAGGAGTGCGTTGGGGGC
TAATGGGCTGGCGTTGGGTGCAAGGGTTGAGATTGAATGTCTGGCGATTGCTGGGGGTTAG

Upstream 100 bases:

>100_bases
TGTTGTCCCCACGCCTTGAGCGGTTTGGCTTTGGCGCCTACATTGGATGCTCCACGCGCCGGCGCTCCGGCGCGCCGCAC
ATCCACCATGGAGGGGCGAC

Downstream 100 bases:

>100_bases
GGCCTTCGTTCTTGGCAGGCGCCGCTGTTTCGCCGGCGTAGCCGGCGACCTCCTTTTGGCCGAGCGACAAAAGGAGGCGA
AAGCGCGTCAGGCTTGCCCT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MEFLNSGKVLPAGLPFSEAVRIGNVVYLSGQMGIVPGSTRLVPGGIREEAKQALMNIRTTLEAHGLTMRDVAKCTIMLAD
ISEWQVFNEVYKGFFEPPYPVRSALGANGLALGARVEIECLAIAGG

Sequences:

>Translated_126_residues
MEFLNSGKVLPAGLPFSEAVRIGNVVYLSGQMGIVPGSTRLVPGGIREEAKQALMNIRTTLEAHGLTMRDVAKCTIMLAD
ISEWQVFNEVYKGFFEPPYPVRSALGANGLALGARVEIECLAIAGG
>Mature_126_residues
MEFLNSGKVLPAGLPFSEAVRIGNVVYLSGQMGIVPGSTRLVPGGIREEAKQALMNIRTTLEAHGLTMRDVAKCTIMLAD
ISEWQVFNEVYKGFFEPPYPVRSALGANGLALGARVEIECLAIAGG

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=111, Percent_Identity=45.045045045045, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI87082213, Length=112, Percent_Identity=32.1428571428571, Blast_Score=77, Evalue=4e-16,
Organism=Escherichia coli, GI87082396, Length=117, Percent_Identity=31.6239316239316, Blast_Score=73, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI71982075, Length=111, Percent_Identity=42.3423423423423, Blast_Score=93, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI25148896, Length=111, Percent_Identity=42.3423423423423, Blast_Score=93, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI71982068, Length=111, Percent_Identity=42.3423423423423, Blast_Score=93, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=36.8932038834951, Blast_Score=82, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6322138, Length=113, Percent_Identity=32.7433628318584, Blast_Score=78, Evalue=4e-16,
Organism=Drosophila melanogaster, GI19921376, Length=112, Percent_Identity=38.3928571428571, Blast_Score=88, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13466; Mature: 13466

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFLNSGKVLPAGLPFSEAVRIGNVVYLSGQMGIVPGSTRLVPGGIREEAKQALMNIRTT
CCCCCCCCEEECCCCHHHHHHCCCEEEECCCEEECCCCCEECCCCHHHHHHHHHHHHHHH
LEAHGLTMRDVAKCTIMLADISEWQVFNEVYKGFFEPPYPVRSALGANGLALGARVEIEC
HHHCCCCHHHHHHEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEECCEEEEEE
LAIAGG
EEEECC
>Mature Secondary Structure
MEFLNSGKVLPAGLPFSEAVRIGNVVYLSGQMGIVPGSTRLVPGGIREEAKQALMNIRTT
CCCCCCCCEEECCCCHHHHHHCCCEEEECCCEEECCCCCEECCCCHHHHHHHHHHHHHHH
LEAHGLTMRDVAKCTIMLADISEWQVFNEVYKGFFEPPYPVRSALGANGLALGARVEIEC
HHHCCCCHHHHHHEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEECCEEEEEE
LAIAGG
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]