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The map label for this gene is ydaM [H]

Identifier: 73539687

GI number: 73539687

Start: 2705764

End: 2706162

Strand: Direct

Name: ydaM [H]

Synonym: Reut_B5867

Alternate gene names: 73539687

Gene position: 2705764-2706162 (Clockwise)

Preceding gene: 73539686

Following gene: 73539688

Centisome position: 99.25

GC content: 70.18

Gene sequence:

>399_bases
ATGCACCGTGGCAGCGGTGTGCCTCGCACACGCACGACTGATGTGGCGTCACGGCAAGGGCTTCGGGCCGCGTTTCACTG
TGGCGATCCTGCTGCTTCAGGTCCTGATCCTGTGCGGCAGGCTTTGCGCCACACCGACCAGCTCGGCCGCTTCGGCGGCG
AGGAATTCGTGGTGCTGATGCCGCAGACCGACCGTCCGACCGCGCTCGCCACGGCTGAACGCCTGCGGCAGGCCGTCGCG
AACCAGCAGGCCAGCGACGGCTGGCCCACATGTACGGCAAGCGTCGGGCTGGCCAGTGTCGAGGCCGGCGAAACCACGCT
CGATGGCGTCCTGTCGCGCGCCGACGCGGCGCTGTACCGCGCCAAAGCGGACGGGCGAGACCGCGTGGCGGTGGGCTGA

Upstream 100 bases:

>100_bases
CCCCCCTACGCTGGCTGGCAGCGGGCCTGGCCTGCCTGGCAGGCCTTGGCTGGTACCAGGCAATCTCGCCGGACTACCGA
ATCCGCGTTGTGCTGCTGGC

Downstream 100 bases:

>100_bases
CGCTGCATGCCGTCGCGCTGTTTCATGGGTTAACCCCGCCCTTCTTCGGAGGGGTCAAACTTTGCGGAACCTCGCCGTTA
GCGGAACAACAGGTTTTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MHRGSGVPRTRTTDVASRQGLRAAFHCGDPAASGPDPVRQALRHTDQLGRFGGEEFVVLMPQTDRPTALATAERLRQAVA
NQQASDGWPTCTASVGLASVEAGETTLDGVLSRADAALYRAKADGRDRVAVG

Sequences:

>Translated_132_residues
MHRGSGVPRTRTTDVASRQGLRAAFHCGDPAASGPDPVRQALRHTDQLGRFGGEEFVVLMPQTDRPTALATAERLRQAVA
NQQASDGWPTCTASVGLASVEAGETTLDGVLSRADAALYRAKADGRDRVAVG
>Mature_132_residues
MHRGSGVPRTRTTDVASRQGLRAAFHCGDPAASGPDPVRQALRHTDQLGRFGGEEFVVLMPQTDRPTALATAERLRQAVA
NQQASDGWPTCTASVGLASVEAGETTLDGVLSRADAALYRAKADGRDRVAVG

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=87, Percent_Identity=49.4252873563218, Blast_Score=76, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 13883; Mature: 13883

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRGSGVPRTRTTDVASRQGLRAAFHCGDPAASGPDPVRQALRHTDQLGRFGGEEFVVLM
CCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
PQTDRPTALATAERLRQAVANQQASDGWPTCTASVGLASVEAGETTLDGVLSRADAALYR
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHCCCCCHHHHHHHHHHHHHHHH
AKADGRDRVAVG
HCCCCCCCCCCC
>Mature Secondary Structure
MHRGSGVPRTRTTDVASRQGLRAAFHCGDPAASGPDPVRQALRHTDQLGRFGGEEFVVLM
CCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
PQTDRPTALATAERLRQAVANQQASDGWPTCTASVGLASVEAGETTLDGVLSRADAALYR
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHCCCCCHHHHHHHHHHHHHHHH
AKADGRDRVAVG
HCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]