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The map label for this gene is ydfH [H]

Identifier: 73538617

GI number: 73538617

Start: 1492332

End: 1493054

Strand: Direct

Name: ydfH [H]

Synonym: Reut_B4792

Alternate gene names: 73538617

Gene position: 1492332-1493054 (Clockwise)

Preceding gene: 73538603

Following gene: 73538618

Centisome position: 54.74

GC content: 70.82

Gene sequence:

>723_bases
ATGCAACCGACCGACCACACTTTGAATCCACCACGCTTCGCCGGGCGCCACAGCCGGGCCGAGGACATCCGCGCCACGCT
GGAGGCCGAAATCGAGGCCGGCCTGCTGTGCCCCGGCGCGCCGCTCGACGAGCGCGAACTGGCCCTGCGCTTTGGCGTAT
CGCGCACACCGGTGCGGGAAGCCTTGCAGCAACTGGCCGCGCACGAACTGGTCAGCATCGCGCCGCGGCAGGGCGCTGCG
GTCGCGCGTCTGTCGGTGGGCAAGGTGCGGGCGATGCTCGAATACGTGGGGGAACTGGAATCGCTGGCCGCGCGGCTGGC
GGCACGCCGCGGCGACGAAGCGCTGCACGCCGCGCTCGATGCGGGCCTGTCGCTGGGACGCCGCGTTGCGGCGACGCCGG
GCGCCGCGGGCTATGCCGCCGCGAACGCGGCGTTCCACGAAGCCATCTACCAGGGCTGTCGCAATGAAATCCTCGCCGGG
CATATCCGCGCGGCGCGGCGCTGCCTGCAGCGTTACCGCATGCGCGACTTTGCCACCGGCCAGCAGGTTGCGAAGTCGCT
GGAAGAACACCAGCGCATTGCCGACGCCATCCGCGCCGGCGACGAACAGCAGGCGGCGGCGGCCATGACGCTGCATGTGC
CAGCGGGCACCACGGGCTTCGCGGAATTTCTGGCGACCGTGCCGACCCATTTCTTCGACGGCGGCCATGCCGCTGCTTCC
TGA

Upstream 100 bases:

>100_bases
AGCCGGCCCAGCGCGATCCTTTTCCGCCTTCTTTGCATACCAGTATTTTTTTGTTGTATATTTTCGATCAACAAAGAGAC
GCTTGACCGCGTCGAACCGT

Downstream 100 bases:

>100_bases
CCTTGCATCCCGGAACCCGTTACCTCAGGCATCCCATGACCAGACCTCTCCGTTCGATCGACGTGCCCGGCCTTGCGCAC
AACGCCCCCATTCCCACCGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MQPTDHTLNPPRFAGRHSRAEDIRATLEAEIEAGLLCPGAPLDERELALRFGVSRTPVREALQQLAAHELVSIAPRQGAA
VARLSVGKVRAMLEYVGELESLAARLAARRGDEALHAALDAGLSLGRRVAATPGAAGYAAANAAFHEAIYQGCRNEILAG
HIRAARRCLQRYRMRDFATGQQVAKSLEEHQRIADAIRAGDEQQAAAAMTLHVPAGTTGFAEFLATVPTHFFDGGHAAAS

Sequences:

>Translated_240_residues
MQPTDHTLNPPRFAGRHSRAEDIRATLEAEIEAGLLCPGAPLDERELALRFGVSRTPVREALQQLAAHELVSIAPRQGAA
VARLSVGKVRAMLEYVGELESLAARLAARRGDEALHAALDAGLSLGRRVAATPGAAGYAAANAAFHEAIYQGCRNEILAG
HIRAARRCLQRYRMRDFATGQQVAKSLEEHQRIADAIRAGDEQQAAAAMTLHVPAGTTGFAEFLATVPTHFFDGGHAAAS
>Mature_240_residues
MQPTDHTLNPPRFAGRHSRAEDIRATLEAEIEAGLLCPGAPLDERELALRFGVSRTPVREALQQLAAHELVSIAPRQGAA
VARLSVGKVRAMLEYVGELESLAARLAARRGDEALHAALDAGLSLGRRVAATPGAAGYAAANAAFHEAIYQGCRNEILAG
HIRAARRCLQRYRMRDFATGQQVAKSLEEHQRIADAIRAGDEQQAAAAMTLHVPAGTTGFAEFLATVPTHFFDGGHAAAS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=206, Percent_Identity=28.1553398058252, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25584; Mature: 25584

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPTDHTLNPPRFAGRHSRAEDIRATLEAEIEAGLLCPGAPLDERELALRFGVSRTPVRE
CCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHCCCCCHHHH
ALQQLAAHELVSIAPRQGAAVARLSVGKVRAMLEYVGELESLAARLAARRGDEALHAALD
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
AGLSLGRRVAATPGAAGYAAANAAFHEAIYQGCRNEILAGHIRAARRCLQRYRMRDFATG
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
QQVAKSLEEHQRIADAIRAGDEQQAAAAMTLHVPAGTTGFAEFLATVPTHFFDGGHAAAS
HHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQPTDHTLNPPRFAGRHSRAEDIRATLEAEIEAGLLCPGAPLDERELALRFGVSRTPVRE
CCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHCCCCCHHHH
ALQQLAAHELVSIAPRQGAAVARLSVGKVRAMLEYVGELESLAARLAARRGDEALHAALD
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
AGLSLGRRVAATPGAAGYAAANAAFHEAIYQGCRNEILAGHIRAARRCLQRYRMRDFATG
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
QQVAKSLEEHQRIADAIRAGDEQQAAAAMTLHVPAGTTGFAEFLATVPTHFFDGGHAAAS
HHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]