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The map label for this gene is ydeL [H]

Identifier: 73537587

GI number: 73537587

Start: 348008

End: 349549

Strand: Reverse

Name: ydeL [H]

Synonym: Reut_B3752

Alternate gene names: 73537587

Gene position: 349549-348008 (Counterclockwise)

Preceding gene: 73537588

Following gene: 73537586

Centisome position: 12.82

GC content: 67.57

Gene sequence:

>1542_bases
ATGACCTCCAAGCTGACGCCCCCCATGTGGGACCAGCTCTTCCAGCAGCACGCCCACTCCGGCCTGAGCCTGCAAGGCAA
GATCCGCCAGATGCTGGTCTCCGCGATCCTGGATGAACAGCTCCCGCAGGGCGTCCCGCTGCCGAGCAGCCGCGAGATGT
CCGCGCAGCTGCGCGTGGCCCGCAATACGGTGGTACTGGCCTACCAGCAGCTCGTGGACGAGGGCTATCTGATCTCCCGC
GAGCGCAGCGGCTATTTCGTCAATCCGGACATCCTGGGCACGCGCGTCAGCGGCGTGGCATCGCTGCGCGGCACGCCGCA
ACCCGACACGCACGGCAGCGCCCGTCCCGACTGGGACAGGCGTTTCGTGTTCCGCCCGACCCACCAGCGCAATATCGTCA
AGCGCCACAACTGGCGCGATTACCCGTATCCGTTCATCTACGGTCAGTACGATCCCGTCCTCTTCCCCACGGCCGACTGG
CGCGAGTGCTGCCTGAAGGCACTGAGCGTGCTCGATATCCACGAGTGGGCGCAGGACATGATCGTGCGCGACGACGAATC
GCTCGTGCAGCAGATCCGCACGCGCGTGTTGCCGCGCCGCGGCGTGTGGGCCGGCGCGGACGAGATCGTGATTACCGTGG
GCGCACAGCAGGCGCTCTACCTGCTGTCCGATTTGCTGGCTAGCCCAGATACACCAGTCGGCATCGAGGAACCGGGCTAC
CCGGACGCGCGCAATATCTTCGGCCGCCATACCTCGAAGCTGATTCCACTGCCGATCGACGCCGAAGGCGTGATTCCCTC
CGATGCGCTGCGCGCATGCGACTACGTCTACGTCACGCCAAGCCACCAGTGCCCCACCACGGTCACCATGCCGCTGGCGC
GCCGGCAGGCGCTGCTGCGGCAAGCGGAAGAGGCGGATTTCGTGCTGATCGAAGACGACTACGAAAGCGAGAGCCGCTTC
GAAGGCGACCCGACGCCGACGCTGAAAAGCCTGGACCGCAACAACCGCGTGATCTACGTCGGCAGCCTGTCCAAGAGCCT
CGCACCGGGGCTGCGCATCGGCTACATCGTCGGCCCCGCCGAACTGATTGCCGAACTGCGCGGCGCGCGCCGGCTGATGT
TGCGGCATCCGTCCGCGTATATCCAGCGCGCGTTCTCGCTGTTCCTGTCGCTGGGCCACTATGACGCGCATCTGCGGCGC
CTGTCCGCCGCGCACCGGGCGCGCGCCGAGACCGTGCTGGCCGCGCTGGCCGCCCATATGCCCGAGTTCCGCCCGGTGCC
AATCGCCGGCGGCGCGTCGTGCTGGATCGAAGGGCCGGCGTGGCTCGATGCCGATGCGCTGGCGCGCCTCGCCGAACTGC
AGGGTGTGCTGATCGAGCCCGGCAGCGTGTTCTTCATGGGCGAGCCAGCGCCACGCAACGGCTTCCGGCTCGGCTATTCG
TCGATCGCGCCGGAACGTATCGAGCCCGGCATACGCGTGCTAGCCAGCGTGGCACGCGAACTGCACGCAGCTATCCCCGC
ACGGGGCGCATCGGCGGCCTGA

Upstream 100 bases:

>100_bases
CGGAGATGCCTCGGCCGGATTTGCATGAATATTGATTGAGGATGGGAAAGGGTGTGGAGATGGGGTAACCTGTCTTCCGC
CCCCTCAAGACAGCCGCCCT

Downstream 100 bases:

>100_bases
GCGGCGGCTCAGGCGGCACTGAGGCAAGAAGGGCTACCGCGCTCCGCGCAGTAGCCCTTTCTGCATTTTCGGCTCTGCCG
GAGGTCATTTGCCGGGCCTA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 512

Protein sequence:

>513_residues
MTSKLTPPMWDQLFQQHAHSGLSLQGKIRQMLVSAILDEQLPQGVPLPSSREMSAQLRVARNTVVLAYQQLVDEGYLISR
ERSGYFVNPDILGTRVSGVASLRGTPQPDTHGSARPDWDRRFVFRPTHQRNIVKRHNWRDYPYPFIYGQYDPVLFPTADW
RECCLKALSVLDIHEWAQDMIVRDDESLVQQIRTRVLPRRGVWAGADEIVITVGAQQALYLLSDLLASPDTPVGIEEPGY
PDARNIFGRHTSKLIPLPIDAEGVIPSDALRACDYVYVTPSHQCPTTVTMPLARRQALLRQAEEADFVLIEDDYESESRF
EGDPTPTLKSLDRNNRVIYVGSLSKSLAPGLRIGYIVGPAELIAELRGARRLMLRHPSAYIQRAFSLFLSLGHYDAHLRR
LSAAHRARAETVLAALAAHMPEFRPVPIAGGASCWIEGPAWLDADALARLAELQGVLIEPGSVFFMGEPAPRNGFRLGYS
SIAPERIEPGIRVLASVARELHAAIPARGASAA

Sequences:

>Translated_513_residues
MTSKLTPPMWDQLFQQHAHSGLSLQGKIRQMLVSAILDEQLPQGVPLPSSREMSAQLRVARNTVVLAYQQLVDEGYLISR
ERSGYFVNPDILGTRVSGVASLRGTPQPDTHGSARPDWDRRFVFRPTHQRNIVKRHNWRDYPYPFIYGQYDPVLFPTADW
RECCLKALSVLDIHEWAQDMIVRDDESLVQQIRTRVLPRRGVWAGADEIVITVGAQQALYLLSDLLASPDTPVGIEEPGY
PDARNIFGRHTSKLIPLPIDAEGVIPSDALRACDYVYVTPSHQCPTTVTMPLARRQALLRQAEEADFVLIEDDYESESRF
EGDPTPTLKSLDRNNRVIYVGSLSKSLAPGLRIGYIVGPAELIAELRGARRLMLRHPSAYIQRAFSLFLSLGHYDAHLRR
LSAAHRARAETVLAALAAHMPEFRPVPIAGGASCWIEGPAWLDADALARLAELQGVLIEPGSVFFMGEPAPRNGFRLGYS
SIAPERIEPGIRVLASVARELHAAIPARGASAA
>Mature_512_residues
TSKLTPPMWDQLFQQHAHSGLSLQGKIRQMLVSAILDEQLPQGVPLPSSREMSAQLRVARNTVVLAYQQLVDEGYLISRE
RSGYFVNPDILGTRVSGVASLRGTPQPDTHGSARPDWDRRFVFRPTHQRNIVKRHNWRDYPYPFIYGQYDPVLFPTADWR
ECCLKALSVLDIHEWAQDMIVRDDESLVQQIRTRVLPRRGVWAGADEIVITVGAQQALYLLSDLLASPDTPVGIEEPGYP
DARNIFGRHTSKLIPLPIDAEGVIPSDALRACDYVYVTPSHQCPTTVTMPLARRQALLRQAEEADFVLIEDDYESESRFE
GDPTPTLKSLDRNNRVIYVGSLSKSLAPGLRIGYIVGPAELIAELRGARRLMLRHPSAYIQRAFSLFLSLGHYDAHLRRL
SAAHRARAETVLAALAAHMPEFRPVPIAGGASCWIEGPAWLDADALARLAELQGVLIEPGSVFFMGEPAPRNGFRLGYSS
IAPERIEPGIRVLASVARELHAAIPARGASAA

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=319, Percent_Identity=27.5862068965517, Blast_Score=116, Evalue=6e-26,
Organism=Homo sapiens, GI33469970, Length=319, Percent_Identity=27.5862068965517, Blast_Score=116, Evalue=6e-26,
Organism=Escherichia coli, GI1787710, Length=489, Percent_Identity=27.8118609406953, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1790797, Length=474, Percent_Identity=27.4261603375527, Blast_Score=117, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6321236, Length=316, Percent_Identity=24.3670886075949, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 57005; Mature: 56874

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKLTPPMWDQLFQQHAHSGLSLQGKIRQMLVSAILDEQLPQGVPLPSSREMSAQLRVA
CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
RNTVVLAYQQLVDEGYLISRERSGYFVNPDILGTRVSGVASLRGTPQPDTHGSARPDWDR
HHHHHHHHHHHHCCCCEEEECCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
RFVFRPTHQRNIVKRHNWRDYPYPFIYGQYDPVLFPTADWRECCLKALSVLDIHEWAQDM
EEEECCCHHHHHHHHCCCCCCCCCEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH
IVRDDESLVQQIRTRVLPRRGVWAGADEIVITVGAQQALYLLSDLLASPDTPVGIEEPGY
HCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCC
PDARNIFGRHTSKLIPLPIDAEGVIPSDALRACDYVYVTPSHQCPTTVTMPLARRQALLR
CCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHCCEEEECCCCCCCCEEEHHHHHHHHHHH
QAEEADFVLIEDDYESESRFEGDPTPTLKSLDRNNRVIYVGSLSKSLAPGLRIGYIVGPA
HHCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCHHHCCCCEEEEEECHH
ELIAELRGARRLMLRHPSAYIQRAFSLFLSLGHYDAHLRRLSAAHRARAETVLAALAAHM
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PEFRPVPIAGGASCWIEGPAWLDADALARLAELQGVLIEPGSVFFMGEPAPRNGFRLGYS
CCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCEEECCCCEEEECCCCCCCCCCCCHH
SIAPERIEPGIRVLASVARELHAAIPARGASAA
HCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TSKLTPPMWDQLFQQHAHSGLSLQGKIRQMLVSAILDEQLPQGVPLPSSREMSAQLRVA
CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
RNTVVLAYQQLVDEGYLISRERSGYFVNPDILGTRVSGVASLRGTPQPDTHGSARPDWDR
HHHHHHHHHHHHCCCCEEEECCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
RFVFRPTHQRNIVKRHNWRDYPYPFIYGQYDPVLFPTADWRECCLKALSVLDIHEWAQDM
EEEECCCHHHHHHHHCCCCCCCCCEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH
IVRDDESLVQQIRTRVLPRRGVWAGADEIVITVGAQQALYLLSDLLASPDTPVGIEEPGY
HCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCC
PDARNIFGRHTSKLIPLPIDAEGVIPSDALRACDYVYVTPSHQCPTTVTMPLARRQALLR
CCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHCCEEEECCCCCCCCEEEHHHHHHHHHHH
QAEEADFVLIEDDYESESRFEGDPTPTLKSLDRNNRVIYVGSLSKSLAPGLRIGYIVGPA
HHCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCHHHCCCCEEEEEECHH
ELIAELRGARRLMLRHPSAYIQRAFSLFLSLGHYDAHLRRLSAAHRARAETVLAALAAHM
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PEFRPVPIAGGASCWIEGPAWLDADALARLAELQGVLIEPGSVFFMGEPAPRNGFRLGYS
CCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCEEECCCCEEEECCCCCCCCCCCCHH
SIAPERIEPGIRVLASVARELHAAIPARGASAA
HCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]