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The map label for this gene is yfdE [H]

Identifier: 73537376

GI number: 73537376

Start: 89265

End: 90464

Strand: Reverse

Name: yfdE [H]

Synonym: Reut_B3541

Alternate gene names: 73537376

Gene position: 90464-89265 (Counterclockwise)

Preceding gene: 73537377

Following gene: 73537375

Centisome position: 3.32

GC content: 66.5

Gene sequence:

>1200_bases
ATGACTGCATCTACGCCCAACGGCATCCGGCCGCTCGACGGCATCCGCGTGGTGTCGCTCGAACACGCGGTCGCGGCCCC
TTTCGCCACGCGCCAGCTTGCCGATCTCGGTGCGCGCGTGATCAAGATCGAGCGCCCTGGCGTGGGCGATTTCGCCCGCG
GCTATGACGAGACCGTGCACGGCCAGTCGTCGTACTTTGTCTGGCTCAACCGCGGCAAGGAGAGCCTGACGCTCGACCTG
AAAGACGCCGAGGCACAAGCCATCCTGCACAAGTTGCTGGCCGATGCCGACGTACTGGTGCAGAACCTCGCCCCTGGCGC
CGCCGCGCGCATGGGCCTCGACTTCGACACCCTGCATCCGCGCTACGAAAAGCTGATCGTCTGCGATATCTCGGGCTACG
GCGACGCGGGCCCCTATCGCGACAAGAAGGCCTATGACCTGCTGATCCAGGCCGCGGCCGGCCTGGTCGGCCTGACTGGC
GGCCCGAACGAGCCGTCGCGTGCCGGCGTGTCGATTGCCGACATCTCGGCCGGCATGTACGCCTACAGCGGCATCCTCTC
GGCGCTGCTGCAGCGCGGGCGCACCGGCAAGGGCCTGCGCGTGCAGGTCACCATGCTGGAAACCATGGCGGAGTGGATGA
ACCAGGTGCTCTACCTCGGTCACTACGGCGGCAAGCCGCCGGCGCGCGTCGGCGCCTCGCACCCGACCATCGCGCCGTAT
GGCATTCATCGCACTGCCAATGGCAGCGTGATCTTCAGCGTGCAGAACGAGCGCGAGTTCGCCAACTTCTGCGAGATCGT
GCTCGGCAATCGCGAACTCGCACAGGACGAGCGGTTCTCAAGCAATACCGCGCGCGTGCGCAACCGGCCCGAACTCACCA
CCATCATCGAGGATCGCTTCTCGACGCTGACCGTGGCACAGGTCGAGGAATTGCTCGACCAGGCACAGATTGCCAACGCC
CCGATGAACGACATCGAAGGCGTGTGGAATCATCCGCAGTTGCAGGCGCGCGAGCGCTGGCGCAAGGTGGAGACGCCGAA
TGGCACCGTCGACGCGCTGCTGCCGCCGGCCAATCTTTCCGGCGTGGAGCCGGCGATGGGCGCCATCCCCGCCCTGGGCG
CGCACACCGCTTCCATCCTGGCCGAACTCGGCTATGGCGCTTCGGACGTCGAAGCCCTGGCCGCCAAGAAAGTCGTCTGA

Upstream 100 bases:

>100_bases
AGACCCGCCTGTACCAGGTCGCACCGATCTCGACCAACCTGATCCTGTCCTACGTGGCCGAGCACGTGCTCGAGCTGCCG
CGTTCGTTCTGAGGCCGCGC

Downstream 100 bases:

>100_bases
GCGGAAGGGTCCGGCTTCGCCCGGGCCTTTCCCTTTTTCAAACGTTACCGGCACCCAGCCAACATGAGCGCTGACCACAC
CTACCCGACCCGCCAGCTCT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MTASTPNGIRPLDGIRVVSLEHAVAAPFATRQLADLGARVIKIERPGVGDFARGYDETVHGQSSYFVWLNRGKESLTLDL
KDAEAQAILHKLLADADVLVQNLAPGAAARMGLDFDTLHPRYEKLIVCDISGYGDAGPYRDKKAYDLLIQAAAGLVGLTG
GPNEPSRAGVSIADISAGMYAYSGILSALLQRGRTGKGLRVQVTMLETMAEWMNQVLYLGHYGGKPPARVGASHPTIAPY
GIHRTANGSVIFSVQNEREFANFCEIVLGNRELAQDERFSSNTARVRNRPELTTIIEDRFSTLTVAQVEELLDQAQIANA
PMNDIEGVWNHPQLQARERWRKVETPNGTVDALLPPANLSGVEPAMGAIPALGAHTASILAELGYGASDVEALAAKKVV

Sequences:

>Translated_399_residues
MTASTPNGIRPLDGIRVVSLEHAVAAPFATRQLADLGARVIKIERPGVGDFARGYDETVHGQSSYFVWLNRGKESLTLDL
KDAEAQAILHKLLADADVLVQNLAPGAAARMGLDFDTLHPRYEKLIVCDISGYGDAGPYRDKKAYDLLIQAAAGLVGLTG
GPNEPSRAGVSIADISAGMYAYSGILSALLQRGRTGKGLRVQVTMLETMAEWMNQVLYLGHYGGKPPARVGASHPTIAPY
GIHRTANGSVIFSVQNEREFANFCEIVLGNRELAQDERFSSNTARVRNRPELTTIIEDRFSTLTVAQVEELLDQAQIANA
PMNDIEGVWNHPQLQARERWRKVETPNGTVDALLPPANLSGVEPAMGAIPALGAHTASILAELGYGASDVEALAAKKVV
>Mature_398_residues
TASTPNGIRPLDGIRVVSLEHAVAAPFATRQLADLGARVIKIERPGVGDFARGYDETVHGQSSYFVWLNRGKESLTLDLK
DAEAQAILHKLLADADVLVQNLAPGAAARMGLDFDTLHPRYEKLIVCDISGYGDAGPYRDKKAYDLLIQAAAGLVGLTGG
PNEPSRAGVSIADISAGMYAYSGILSALLQRGRTGKGLRVQVTMLETMAEWMNQVLYLGHYGGKPPARVGASHPTIAPYG
IHRTANGSVIFSVQNEREFANFCEIVLGNRELAQDERFSSNTARVRNRPELTTIIEDRFSTLTVAQVEELLDQAQIANAP
MNDIEGVWNHPQLQARERWRKVETPNGTVDALLPPANLSGVEPAMGAIPALGAHTASILAELGYGASDVEALAAKKVV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=384, Percent_Identity=33.59375, Blast_Score=236, Evalue=4e-62,
Organism=Homo sapiens, GI300863124, Length=329, Percent_Identity=34.9544072948328, Blast_Score=229, Evalue=3e-60,
Organism=Homo sapiens, GI13376042, Length=329, Percent_Identity=31.9148936170213, Blast_Score=195, Evalue=8e-50,
Organism=Homo sapiens, GI300863126, Length=380, Percent_Identity=30.5263157894737, Blast_Score=177, Evalue=1e-44,
Organism=Homo sapiens, GI266456254, Length=399, Percent_Identity=28.8220551378446, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI42794625, Length=399, Percent_Identity=28.8220551378446, Blast_Score=122, Evalue=6e-28,
Organism=Homo sapiens, GI266458393, Length=215, Percent_Identity=33.0232558139535, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI266458397, Length=215, Percent_Identity=33.0232558139535, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI42822893, Length=152, Percent_Identity=32.8947368421053, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI266458395, Length=153, Percent_Identity=32.6797385620915, Blast_Score=75, Evalue=8e-14,
Organism=Escherichia coli, GI87082093, Length=328, Percent_Identity=36.280487804878, Blast_Score=223, Evalue=1e-59,
Organism=Escherichia coli, GI1788717, Length=417, Percent_Identity=30.4556354916067, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1786222, Length=398, Percent_Identity=26.3819095477387, Blast_Score=110, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI32564160, Length=221, Percent_Identity=32.1266968325792, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=339, Percent_Identity=27.4336283185841, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24648431, Length=398, Percent_Identity=35.678391959799, Blast_Score=224, Evalue=6e-59,
Organism=Drosophila melanogaster, GI24585488, Length=333, Percent_Identity=27.027027027027, Blast_Score=91, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42899; Mature: 42768

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASTPNGIRPLDGIRVVSLEHAVAAPFATRQLADLGARVIKIERPGVGDFARGYDETVH
CCCCCCCCCCCCCCEEEEEEHHHHHCCHHHHHHHHCCCEEEEEECCCCCHHHHCCCHHCC
GQSSYFVWLNRGKESLTLDLKDAEAQAILHKLLADADVLVQNLAPGAAARMGLDFDTLHP
CCCEEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHCCC
RYEKLIVCDISGYGDAGPYRDKKAYDLLIQAAAGLVGLTGGPNEPSRAGVSIADISAGMY
CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCEEECCCCCCCCHHCCCEEEHHHHHHH
AYSGILSALLQRGRTGKGLRVQVTMLETMAEWMNQVLYLGHYGGKPPARVGASHPTIAPY
HHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHEEHCCCCCCCCHHCCCCCCCCCCC
GIHRTANGSVIFSVQNEREFANFCEIVLGNRELAQDERFSSNTARVRNRPELTTIIEDRF
CCEEECCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHCCCCCHHHHHHHHH
STLTVAQVEELLDQAQIANAPMNDIEGVWNHPQLQARERWRKVETPNGTVDALLPPANLS
HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCC
GVEPAMGAIPALGAHTASILAELGYGASDVEALAAKKVV
CCCHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TASTPNGIRPLDGIRVVSLEHAVAAPFATRQLADLGARVIKIERPGVGDFARGYDETVH
CCCCCCCCCCCCCEEEEEEHHHHHCCHHHHHHHHCCCEEEEEECCCCCHHHHCCCHHCC
GQSSYFVWLNRGKESLTLDLKDAEAQAILHKLLADADVLVQNLAPGAAARMGLDFDTLHP
CCCEEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHCCC
RYEKLIVCDISGYGDAGPYRDKKAYDLLIQAAAGLVGLTGGPNEPSRAGVSIADISAGMY
CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCEEECCCCCCCCHHCCCEEEHHHHHHH
AYSGILSALLQRGRTGKGLRVQVTMLETMAEWMNQVLYLGHYGGKPPARVGASHPTIAPY
HHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHEEHCCCCCCCCHHCCCCCCCCCCC
GIHRTANGSVIFSVQNEREFANFCEIVLGNRELAQDERFSSNTARVRNRPELTTIIEDRF
CCEEECCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHCCCCCHHHHHHHHH
STLTVAQVEELLDQAQIANAPMNDIEGVWNHPQLQARERWRKVETPNGTVDALLPPANLS
HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCC
GVEPAMGAIPALGAHTASILAELGYGASDVEALAAKKVV
CCCHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]