BacMap

Definition	Ralstonia eutropha JMP134 chromosome chromosome 2, complete sequence.
Accession	NC_007348
Length	2,726,152

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The map label for this gene is bacC [H]

Identifier: 73537305

GI number: 73537305

Start: 8190

End: 8978

Strand: Reverse

Name: bacC [H]

Synonym: Reut_B3470

Alternate gene names: 73537305

Gene position: 8978-8190 (Counterclockwise)

Preceding gene: 73537306

Following gene: 73537304

Centisome position: 0.33

GC content: 63.37

Gene sequence:

>789_bases
ATGCAAGGCATGGAAGGCAAGACGGCCATCGTGACCGGCGGTGCAACGATGATTGGCGAGGCGGTGGTTTCGGCCCTGAT
TTCGGCAGGCGCGAACGTTGTTGTCGTTGACATCGACCAGGCAGGTGGCAATCAGATTGCGCAGCGTCATCCGTCGCGTT
GCCGATTTGCCGCGGTGGACGTCACCAGCGATGCGGACATCGCGACCTGTATCACCCGGACCGTCGAGGCATTTCACGGC
ATCGACCTGCTTATCAACTGTGCCTGCACGTATGTGGACAATGGCGCCGATTCCACCCGGGAGCAGTGGCTGGATTCCTA
CAACGTCAATGTCGTCGGCGCGGCAATGATGCTCAAGGCCTGCGTGCCGGAGATGAAGAAGCGCGGCGGCGGAGCGGTCG
TGAACTTTGCCTCGATCTCGGCCGGCGTGGCGCAGTCTGGGCGTTGGCTGTATCCGATCAGCAAGGCCGCGATGCAGCAG
TTCACCCGCAGCGCGGCGCTTGACTTGGCCCCGGACAATATTCGCGTGAACTCGGTTTCGCCGGGATGGACGTGGTCCTC
GGTCATCAGCGCTCTCAGCGGCGGCGACAAGGCAAAGGCCGACAGTGTCGCCGCCGACTTCCATCCGCTCGGACGCCTCG
GCAAGCCCGAAGAAGTTGCGCAGGTTGTCCTGTTCCTGCTGTCCGACGCAGCCGCGTTCGTCACCGGTACCGACTACGCG
TGTGATGGCGGCTATGGCGCGTTGGGACCGGAAGGCCGGCATGCCGCCATCCAACGCCTCATGGCGTAG

Upstream 100 bases:

>100_bases
GATATCGGGCCAGCGGATTCCGGATAGCAACCTCGTCATCGCTAAACCAAACTACCTTCCACATGGCGACGTACAAGCCA
GAAAACAAGCGGAGACAGAC

Downstream 100 bases:

>100_bases
CAGCGCCAGATGAATCGCCGCGCGGGCGTCCGGATCGTGCCCAAGCGTCAGACAAAGACAAGCCCCCACTGGAGACACAC
ATGACAACCCATTCCTTTGC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MQGMEGKTAIVTGGATMIGEAVVSALISAGANVVVVDIDQAGGNQIAQRHPSRCRFAAVDVTSDADIATCITRTVEAFHG
IDLLINCACTYVDNGADSTREQWLDSYNVNVVGAAMMLKACVPEMKKRGGGAVVNFASISAGVAQSGRWLYPISKAAMQQ
FTRSAALDLAPDNIRVNSVSPGWTWSSVISALSGGDKAKADSVAADFHPLGRLGKPEEVAQVVLFLLSDAAAFVTGTDYA
CDGGYGALGPEGRHAAIQRLMA

Sequences:

>Translated_262_residues
MQGMEGKTAIVTGGATMIGEAVVSALISAGANVVVVDIDQAGGNQIAQRHPSRCRFAAVDVTSDADIATCITRTVEAFHG
IDLLINCACTYVDNGADSTREQWLDSYNVNVVGAAMMLKACVPEMKKRGGGAVVNFASISAGVAQSGRWLYPISKAAMQQ
FTRSAALDLAPDNIRVNSVSPGWTWSSVISALSGGDKAKADSVAADFHPLGRLGKPEEVAQVVLFLLSDAAAFVTGTDYA
CDGGYGALGPEGRHAAIQRLMA
>Mature_262_residues
MQGMEGKTAIVTGGATMIGEAVVSALISAGANVVVVDIDQAGGNQIAQRHPSRCRFAAVDVTSDADIATCITRTVEAFHG
IDLLINCACTYVDNGADSTREQWLDSYNVNVVGAAMMLKACVPEMKKRGGGAVVNFASISAGVAQSGRWLYPISKAAMQQ
FTRSAALDLAPDNIRVNSVSPGWTWSSVISALSGGDKAKADSVAADFHPLGRLGKPEEVAQVVLFLLSDAAAFVTGTDYA
CDGGYGALGPEGRHAAIQRLMA

Specific function: Part of the bacABCDE operon responsible for the biosynthesis of bacilysin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=34.9593495934959, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI59889578, Length=226, Percent_Identity=29.646017699115, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI4758504, Length=253, Percent_Identity=30.0395256916996, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=31.7460317460317, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=29.7297297297297, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=29.7619047619048, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI15277342, Length=250, Percent_Identity=29.6, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=29.6747967479675, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI40254992, Length=239, Percent_Identity=28.0334728033473, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=29.3877551020408, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI83715985, Length=253, Percent_Identity=28.4584980237154, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI10190704, Length=255, Percent_Identity=26.2745098039216, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI126723191, Length=179, Percent_Identity=34.0782122905028, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI302344755, Length=105, Percent_Identity=41.9047619047619, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI31542939, Length=200, Percent_Identity=27, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI109715829, Length=248, Percent_Identity=27.4193548387097, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI33667109, Length=184, Percent_Identity=30.4347826086957, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI302344752, Length=107, Percent_Identity=37.3831775700935, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=30.859375, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787335, Length=242, Percent_Identity=30.9917355371901, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1786812, Length=248, Percent_Identity=31.8548387096774, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=29.718875502008, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=27.4193548387097, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=29.4354838709677, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI2367175, Length=259, Percent_Identity=30.8880308880309, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=27.3469387755102, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=25.4980079681275, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1789378, Length=249, Percent_Identity=26.1044176706827, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI2367365, Length=253, Percent_Identity=29.6442687747036, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787820, Length=220, Percent_Identity=24.0909090909091, Blast_Score=64, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=31.7073170731707, Blast_Score=110, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI25147288, Length=254, Percent_Identity=33.0708661417323, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17560332, Length=281, Percent_Identity=32.3843416370107, Blast_Score=107, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=31.0756972111554, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71994600, Length=200, Percent_Identity=35.5, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=31.6793893129771, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=31.6205533596838, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17562910, Length=258, Percent_Identity=32.1705426356589, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17538480, Length=260, Percent_Identity=31.1538461538462, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=29.0076335877863, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=28.3524904214559, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=29.8850574712644, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17565030, Length=284, Percent_Identity=29.5774647887324, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=28.0898876404494, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=29.277566539924, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=266, Percent_Identity=28.1954887218045, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=28.0155642023346, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=29.3893129770992, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=272, Percent_Identity=27.5735294117647, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=27.6679841897233, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=277, Percent_Identity=28.5198555956679, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17531453, Length=270, Percent_Identity=28.1481481481481, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=29.2682926829268, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=268, Percent_Identity=27.9850746268657, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=257, Percent_Identity=27.2373540856031, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17536025, Length=261, Percent_Identity=26.8199233716475, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=259, Percent_Identity=25.8687258687259, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=230, Percent_Identity=26.5217391304348, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17558628, Length=230, Percent_Identity=28.695652173913, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=261, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=260, Percent_Identity=29.6153846153846, Blast_Score=94, Evalue=2e-20,
Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=34.251968503937, Blast_Score=120, Evalue=6e-28,
Organism=Drosophila melanogaster, GI21357041, Length=259, Percent_Identity=32.046332046332, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI28571526, Length=259, Percent_Identity=32.4324324324324, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=31.2252964426877, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21355319, Length=257, Percent_Identity=29.5719844357977, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24644339, Length=257, Percent_Identity=30.7392996108949, Blast_Score=97, Evalue=9e-21,
Organism=Drosophila melanogaster, GI24643142, Length=243, Percent_Identity=29.6296296296296, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI17737361, Length=235, Percent_Identity=29.7872340425532, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24644337, Length=194, Percent_Identity=31.9587628865979, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI21358495, Length=241, Percent_Identity=26.9709543568465, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21357673, Length=222, Percent_Identity=25.2252252252252, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27196; Mature: 27196

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGMEGKTAIVTGGATMIGEAVVSALISAGANVVVVDIDQAGGNQIAQRHPSRCRFAAVD
CCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCCCEEEEEE
VTSDADIATCITRTVEAFHGIDLLINCACTYVDNGADSTREQWLDSYNVNVVGAAMMLKA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHCCCCHHHHHHHHHHH
CVPEMKKRGGGAVVNFASISAGVAQSGRWLYPISKAAMQQFTRSAALDLAPDNIRVNSVS
HHHHHHHCCCCEEEEEHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCCCCCEEEECCC
PGWTWSSVISALSGGDKAKADSVAADFHPLGRLGKPEEVAQVVLFLLSDAAAFVTGTDYA
CCCCHHHHHHHHCCCCCCCHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHEEECCCCC
CDGGYGALGPEGRHAAIQRLMA
CCCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MQGMEGKTAIVTGGATMIGEAVVSALISAGANVVVVDIDQAGGNQIAQRHPSRCRFAAVD
CCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCCCEEEEEE
VTSDADIATCITRTVEAFHGIDLLINCACTYVDNGADSTREQWLDSYNVNVVGAAMMLKA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHCCCCHHHHHHHHHHH
CVPEMKKRGGGAVVNFASISAGVAQSGRWLYPISKAAMQQFTRSAALDLAPDNIRVNSVS
HHHHHHHCCCCEEEEEHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCCCCCEEEECCC
PGWTWSSVISALSGGDKAKADSVAADFHPLGRLGKPEEVAQVVLFLLSDAAAFVTGTDYA
CCCCHHHHHHHHCCCCCCCHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHEEECCCCC
CDGGYGALGPEGRHAAIQRLMA
CCCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA