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The map label for this gene is yfdE [H]

Identifier: 73542771

GI number: 73542771

Start: 3399073

End: 3400308

Strand: Direct

Name: yfdE [H]

Synonym: Reut_A3087

Alternate gene names: 73542771

Gene position: 3399073-3400308 (Clockwise)

Preceding gene: 73542770

Following gene: 73542772

Centisome position: 89.3

GC content: 67.07

Gene sequence:

>1236_bases
ATGATTGCATTGCAGGGAATTCGGGTGCTCGACCTGAGCAAGGTACTTGCGGGCCCGCTGTGCGGCCAGTATCTGGGGGA
GCTTGGCGCCGAAGTCATCAAGGTCGAGCCGGTCGGTAGTGGCGACGACACGCGCGCGTGGCTGCCGCAGGAACAGGGCC
AGTCGGCGACCTTCCTGGCCGTCAACCACAACAAGCGCAGCATCGCGGTCGACCTCAAGACGGCAGAGGGCCGGAAGATC
GTCCACGCGCTGGCGGCCAAGTCCGATGTCGTCCTGCAAGGATTTGGCAGCGGGGCGGCCGCTCGGCTCGGCGTTGACTA
CGACACCCTTTCGGCCCTGAACCCCGCGCTGATCTACTGCGAGATCTCCGGCTACGGCCGTACCGGCCCGCTCGGACAGG
AACCCGGTTACGACGTCATGCTGCAAGCGTTCAGCGGCATGGTCAGCACCATGGGCGAACCCGGCGGCAGGCTCGCTCGC
GCAAGCTTTTCCCCCGTCGATCTCGGCACCGGCATGCATGCGTTCAGCGGCGTCCTGGCCGCGTTGATCGAACGCCAGAA
GACCGGCCGCGGCATGCAACTCGAGGTCTCGCTGCTCGACACCGCGATGGGATTCATGGGCTACCTCGCACAGAACTACT
GGTGCAGCGGCAAGGTGCCGCGCCCCATGGGTACCGCGCATCCCGCCATGGCGCCTTACCAGGTGTTCGAGGCTTCGGAT
GGGCCGGTCATGATCGGCATCGGCAACGACGCACAGTGGCGGCGCTTCTGCCCCGTCGCCGCCCTGCAGGCCTATGTCGA
CGATCCACGCTTCGCCACCAATGCCGACCGTGTCGCGCACTTCGACGAGGTCGTCGCCCTGGTACAGGCGCGCATTGCCA
CCCAGCCCGTCGCATTCTGGCTGGACGCGCTGCGCAACGCCGGTGTCGCCTGCGCGCCGATCCACACACTCGACCAGGCG
CTCGCGCATCCGCAACTGGCCGCGCGCGGGCTAATCGTCGAGTCCAAGCACCCGGTGCTGGGCAAGGTGAGGAACATGGG
CCTGCCCATCCGCTTCCAGGGGGAAGACCGGATCGCGCACCGGGCGCCGCCATTGCTGGGCGAGCATACCGGGGAGTTAC
TGCGCCAGGCCGGCTATGACAACGATGCTATCGCCGCGTTGCATGCGAGCGGCGTGGTGGCAACCACGGGCCACACGGAA
TCCAACACGCCGACGCAACAGCGCGCCGCGGCATGA

Upstream 100 bases:

>100_bases
GGACGCAGCACGCTGGACCGCGCTGGCGCGGTCGATCGACATCAAGCCTGAATAAGGCAGGCGGGCCCAACCCGCCCAGA
GACATTCAACGGATAGACAC

Downstream 100 bases:

>100_bases
CCATGCGAGACAACATGAGCACCGTTACCTATGAAGTCCGCGACCGCGTCGCGGAAATCCTGCTGGACAGCCCGCCCGTC
AACGCCCTGAACGAAGGCAT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MIALQGIRVLDLSKVLAGPLCGQYLGELGAEVIKVEPVGSGDDTRAWLPQEQGQSATFLAVNHNKRSIAVDLKTAEGRKI
VHALAAKSDVVLQGFGSGAAARLGVDYDTLSALNPALIYCEISGYGRTGPLGQEPGYDVMLQAFSGMVSTMGEPGGRLAR
ASFSPVDLGTGMHAFSGVLAALIERQKTGRGMQLEVSLLDTAMGFMGYLAQNYWCSGKVPRPMGTAHPAMAPYQVFEASD
GPVMIGIGNDAQWRRFCPVAALQAYVDDPRFATNADRVAHFDEVVALVQARIATQPVAFWLDALRNAGVACAPIHTLDQA
LAHPQLAARGLIVESKHPVLGKVRNMGLPIRFQGEDRIAHRAPPLLGEHTGELLRQAGYDNDAIAALHASGVVATTGHTE
SNTPTQQRAAA

Sequences:

>Translated_411_residues
MIALQGIRVLDLSKVLAGPLCGQYLGELGAEVIKVEPVGSGDDTRAWLPQEQGQSATFLAVNHNKRSIAVDLKTAEGRKI
VHALAAKSDVVLQGFGSGAAARLGVDYDTLSALNPALIYCEISGYGRTGPLGQEPGYDVMLQAFSGMVSTMGEPGGRLAR
ASFSPVDLGTGMHAFSGVLAALIERQKTGRGMQLEVSLLDTAMGFMGYLAQNYWCSGKVPRPMGTAHPAMAPYQVFEASD
GPVMIGIGNDAQWRRFCPVAALQAYVDDPRFATNADRVAHFDEVVALVQARIATQPVAFWLDALRNAGVACAPIHTLDQA
LAHPQLAARGLIVESKHPVLGKVRNMGLPIRFQGEDRIAHRAPPLLGEHTGELLRQAGYDNDAIAALHASGVVATTGHTE
SNTPTQQRAAA
>Mature_411_residues
MIALQGIRVLDLSKVLAGPLCGQYLGELGAEVIKVEPVGSGDDTRAWLPQEQGQSATFLAVNHNKRSIAVDLKTAEGRKI
VHALAAKSDVVLQGFGSGAAARLGVDYDTLSALNPALIYCEISGYGRTGPLGQEPGYDVMLQAFSGMVSTMGEPGGRLAR
ASFSPVDLGTGMHAFSGVLAALIERQKTGRGMQLEVSLLDTAMGFMGYLAQNYWCSGKVPRPMGTAHPAMAPYQVFEASD
GPVMIGIGNDAQWRRFCPVAALQAYVDDPRFATNADRVAHFDEVVALVQARIATQPVAFWLDALRNAGVACAPIHTLDQA
LAHPQLAARGLIVESKHPVLGKVRNMGLPIRFQGEDRIAHRAPPLLGEHTGELLRQAGYDNDAIAALHASGVVATTGHTE
SNTPTQQRAAA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=392, Percent_Identity=38.0102040816327, Blast_Score=304, Evalue=9e-83,
Organism=Homo sapiens, GI300863124, Length=418, Percent_Identity=35.8851674641148, Blast_Score=290, Evalue=1e-78,
Organism=Homo sapiens, GI13376042, Length=418, Percent_Identity=33.7320574162679, Blast_Score=254, Evalue=1e-67,
Organism=Homo sapiens, GI300863126, Length=392, Percent_Identity=34.6938775510204, Blast_Score=249, Evalue=4e-66,
Organism=Homo sapiens, GI266456254, Length=405, Percent_Identity=24.6913580246914, Blast_Score=132, Evalue=5e-31,
Organism=Homo sapiens, GI42794625, Length=405, Percent_Identity=24.6913580246914, Blast_Score=132, Evalue=8e-31,
Organism=Homo sapiens, GI266458393, Length=253, Percent_Identity=28.8537549407115, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI266458397, Length=253, Percent_Identity=28.8537549407115, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=33.7931034482759, Blast_Score=86, Evalue=9e-17,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=33.7931034482759, Blast_Score=85, Evalue=1e-16,
Organism=Escherichia coli, GI87082093, Length=351, Percent_Identity=36.1823361823362, Blast_Score=251, Evalue=6e-68,
Organism=Escherichia coli, GI1788717, Length=413, Percent_Identity=30.0242130750605, Blast_Score=178, Evalue=6e-46,
Organism=Escherichia coli, GI1786222, Length=397, Percent_Identity=24.1813602015113, Blast_Score=98, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI32564160, Length=348, Percent_Identity=23.2758620689655, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI115535051, Length=248, Percent_Identity=28.6290322580645, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24648431, Length=394, Percent_Identity=36.2944162436548, Blast_Score=271, Evalue=5e-73,
Organism=Drosophila melanogaster, GI24585488, Length=250, Percent_Identity=27.2, Blast_Score=100, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43563; Mature: 43563

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIALQGIRVLDLSKVLAGPLCGQYLGELGAEVIKVEPVGSGDDTRAWLPQEQGQSATFLA
CEEECCCEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEE
VNHNKRSIAVDLKTAEGRKIVHALAAKSDVVLQGFGSGAAARLGVDYDTLSALNPALIYC
EECCCEEEEEEEECCCCHHHHHHHHCCCCEEEEECCCCCEEEECCCHHHHHHCCCEEEEE
EISGYGRTGPLGQEPGYDVMLQAFSGMVSTMGEPGGRLARASFSPVDLGTGMHAFSGVLA
EECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHH
ALIERQKTGRGMQLEVSLLDTAMGFMGYLAQNYWCSGKVPRPMGTAHPAMAPYQVFEASD
HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCHHEEECCC
GPVMIGIGNDAQWRRFCPVAALQAYVDDPRFATNADRVAHFDEVVALVQARIATQPVAFW
CCEEEEECCCCCHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LDALRNAGVACAPIHTLDQALAHPQLAARGLIVESKHPVLGKVRNMGLPIRFQGEDRIAH
HHHHHCCCCEEEHHHHHHHHHCCHHHHHCCEEEECCCCHHHHHHCCCCCEEECCCCCHHH
RAPPLLGEHTGELLRQAGYDNDAIAALHASGVVATTGHTESNTPTQQRAAA
CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCHHHHCCC
>Mature Secondary Structure
MIALQGIRVLDLSKVLAGPLCGQYLGELGAEVIKVEPVGSGDDTRAWLPQEQGQSATFLA
CEEECCCEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEE
VNHNKRSIAVDLKTAEGRKIVHALAAKSDVVLQGFGSGAAARLGVDYDTLSALNPALIYC
EECCCEEEEEEEECCCCHHHHHHHHCCCCEEEEECCCCCEEEECCCHHHHHHCCCEEEEE
EISGYGRTGPLGQEPGYDVMLQAFSGMVSTMGEPGGRLARASFSPVDLGTGMHAFSGVLA
EECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHH
ALIERQKTGRGMQLEVSLLDTAMGFMGYLAQNYWCSGKVPRPMGTAHPAMAPYQVFEASD
HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCHHEEECCC
GPVMIGIGNDAQWRRFCPVAALQAYVDDPRFATNADRVAHFDEVVALVQARIATQPVAFW
CCEEEEECCCCCHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LDALRNAGVACAPIHTLDQALAHPQLAARGLIVESKHPVLGKVRNMGLPIRFQGEDRIAH
HHHHHCCCCEEEHHHHHHHHHCCHHHHHCCEEEECCCCHHHHHHCCCCCEEECCCCCHHH
RAPPLLGEHTGELLRQAGYDNDAIAALHASGVVATTGHTESNTPTQQRAAA
CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]