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The map label for this gene is yodB [H]

Identifier: 73542297

GI number: 73542297

Start: 2863740

End: 2864315

Strand: Reverse

Name: yodB [H]

Synonym: Reut_A2612

Alternate gene names: 73542297

Gene position: 2864315-2863740 (Counterclockwise)

Preceding gene: 73542298

Following gene: 73542295

Centisome position: 75.25

GC content: 66.49

Gene sequence:

>576_bases
ATGAACCGCCTTCAGGGCGTGTCCGGTGCCACGGAGTTTCCCGGAACCGTGCGCCGCTACGACGGCCTCGCGATCTTTTT
CCACTGGGCTGTATTCCTGCTGATTGCCGCGGCGTACGCGGCGATCGAGCTGAAAGGGTTTGCCGGCAAGGGCAGCCCGG
CGCGGTCGCTGGCCATGGCGGCACATGAATGGACCGGCCTGCTGGTCCTGGTCCTTGCCGTGCCGCGCCTGCTGTGGCGC
CTGGTACGCGGGGCGCCGCCGGCCGAGCCGGGGTCGCGATGGATGCACCTTGCAGGCGAGGCGATGCACTGGGTGCTGTA
CCTGTTCATTTTCGCGCAGCCGATCCTTGGCCTGCTCACGCTCAACGCCGGTGGCCACGTACTCACGCTGCCGGGGCTCG
GCCTTCAGATTCCGGCATGGGTCGGCCCCGACGACGCCTTGAAGGACCAACTGGAGGAAATCCATGAAACGCTGGGCAAC
GCGTTCTACCTGGTGATCGGCCTGCACGCCATGGCGGCGCTGTTCCACCACTACATGCTCGGCGATAACACCTTGCGCCG
CATGTGGCGGCGCTGA

Upstream 100 bases:

>100_bases
CCGGCGGGGTTTTTTATTGCGGAAAACGTGACGATCGACAAGCCGCAGCCCCGCTTGTCGGGGTACGCTCTCGGTAGTCC
CCCAAACCACAGGAGTCCCT

Downstream 100 bases:

>100_bases
GCGAACGTCAGTCGCGCTGGGCGAACGGCGACCGTTCGTTCAGTTCATCGAGGTAGGCATCGATGCCCTCGCGCTCCCGC
ACGAGGAAGCGCTCGACGGC

Product: cytochrome B561

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MNRLQGVSGATEFPGTVRRYDGLAIFFHWAVFLLIAAAYAAIELKGFAGKGSPARSLAMAAHEWTGLLVLVLAVPRLLWR
LVRGAPPAEPGSRWMHLAGEAMHWVLYLFIFAQPILGLLTLNAGGHVLTLPGLGLQIPAWVGPDDALKDQLEEIHETLGN
AFYLVIGLHAMAALFHHYMLGDNTLRRMWRR

Sequences:

>Translated_191_residues
MNRLQGVSGATEFPGTVRRYDGLAIFFHWAVFLLIAAAYAAIELKGFAGKGSPARSLAMAAHEWTGLLVLVLAVPRLLWR
LVRGAPPAEPGSRWMHLAGEAMHWVLYLFIFAQPILGLLTLNAGGHVLTLPGLGLQIPAWVGPDDALKDQLEEIHETLGN
AFYLVIGLHAMAALFHHYMLGDNTLRRMWRR
>Mature_191_residues
MNRLQGVSGATEFPGTVRRYDGLAIFFHWAVFLLIAAAYAAIELKGFAGKGSPARSLAMAAHEWTGLLVLVLAVPRLLWR
LVRGAPPAEPGSRWMHLAGEAMHWVLYLFIFAQPILGLLTLNAGGHVLTLPGLGLQIPAWVGPDDALKDQLEEIHETLGN
AFYLVIGLHAMAALFHHYMLGDNTLRRMWRR

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=176, Percent_Identity=36.3636363636364, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1787296, Length=182, Percent_Identity=29.6703296703297, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87081903, Length=178, Percent_Identity=42.1348314606742, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 21084; Mature: 21084

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLQGVSGATEFPGTVRRYDGLAIFFHWAVFLLIAAAYAAIELKGFAGKGSPARSLAMA
CCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
AHEWTGLLVLVLAVPRLLWRLVRGAPPAEPGSRWMHLAGEAMHWVLYLFIFAQPILGLLT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNAGGHVLTLPGLGLQIPAWVGPDDALKDQLEEIHETLGNAFYLVIGLHAMAALFHHYML
CCCCCCEEECCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GDNTLRRMWRR
CCHHHHHHHCC
>Mature Secondary Structure
MNRLQGVSGATEFPGTVRRYDGLAIFFHWAVFLLIAAAYAAIELKGFAGKGSPARSLAMA
CCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
AHEWTGLLVLVLAVPRLLWRLVRGAPPAEPGSRWMHLAGEAMHWVLYLFIFAQPILGLLT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNAGGHVLTLPGLGLQIPAWVGPDDALKDQLEEIHETLGNAFYLVIGLHAMAALFHHYML
CCCCCCEEECCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GDNTLRRMWRR
CCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]