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The map label for this gene is rarA [H]

Identifier: 73542280

GI number: 73542280

Start: 2847001

End: 2848341

Strand: Reverse

Name: rarA [H]

Synonym: Reut_A2595

Alternate gene names: 73542280

Gene position: 2848341-2847001 (Counterclockwise)

Preceding gene: 73542282

Following gene: 161611255

Centisome position: 74.83

GC content: 66.59

Gene sequence:

>1341_bases
GTGGCGGACACGTTGTTTTCCGATTCTCCCGACCGTTCCCGGCAACCGCTTGCTGAGCGCCTGCGTCCACGCAATATCGA
CGAGGTGATCGGCCAGCAGCACCTGCTCGGAGCGGGCAAGCCGCTGCGCGTGGCGTTCGAGTCCGGCGAGCCGCACTCGA
TGATCCTGTGGGGCCCGCCCGGCGTGGGCAAGACCACGCTCGCGCGGCTGATGGCCGATGCGTTCGACGCCGAGTTCATC
GCGCTGTCGGCCGTGCTGTCCGGTGTGAAGGATATCCGTGAGGCGGTGGATCGCGCCGAGCAGTTTCGCGCGCATGGCCG
CCGCACGCTCGTGTTCGTCGATGAAGTCCACCGCTTCAACAAGAGCCAGCAGGACGCGTTCCTGCCGCACGTGGAAAGCG
GGCTGTTCACGTTCATCGGTGCGACCACCGAGAATCCGTCGTTCGAGGTCAACGGCGCATTGCTGTCGCGCGCGGCCGTG
TACGTGCTGAAAAGTCTCGACGATGCCGAACTCACGCAGCTCGCGCAACGCGCGAGCGAAGAGCTTGGCGGTATCACGTG
GCAGGAAGAGGCGCTCAAGCTGATCGTGGCGTCCGCCGATGGCGATGGCCGCAAGCTGCTGAACAATATCGAGATAGTAG
TCCGCGCGGCACGCAATGCAGGCGCGACCGAGATCGATACCGCTCTGCTGGGCAGCGCGCTGTCCGAGAACCTGCGCCGC
TTCGACAAGGGCGGGGATGCGTTCTACGACCAGATCAGCGCGCTGCACAAGTCGGTGCGCGGCTCCGACCCCGACGCCGC
GCTGTACTGGTTCTGCCGCATGATCGACGGCGGCGCGGATCCACGCTACCTCGCGCGGCGTATCGTGCGCATGGCGTGGG
AGGACATCGGGCTGGCCGATCCGCGCGCCGCCCGGATCACACTGGACGCCGCCGAGACCTATGAGCGCCTCGGTTCGCCC
GAAGGCGAGCTGGCGTTAGGACAGGCACTGATCTACCTGGCCGTGGCGCCCAAGTCGAACGCCGGCTACAACGCGTACAA
CGCGGCACGCGCGTTCGTGTCCAAGGACAAGTCGCGCGCGGTGCCGGTGCATCTGCGCAACGCGCCCACGCGGCTGATGA
AGGAACTCGGCTACGGCCACGCCTACCGCTACGCGCATGACGAGCCCGAGGCCTATGCAGCCGGCGAGCACTATTTCCCG
GACGACCTCAAGGCGCAGGACTGGTACCAGCCAGTACCGCGCGGCCTGGAAGGCAAGATCGCCGAGAAGCTACGCCACCT
GCGCGAACTCGACGCGGCCTGGCACCGCGAGCACAAGGCCAAGGGCAAACCGGCGGAATAA

Upstream 100 bases:

>100_bases
GGCGCGGCGGAACAATGGTCTACACTCTCACGTTCCCCGGCGCCGCTGGCGCCAACCACGCCGATGCCTTGCAGCTGGCG
ATTTTCGAGGCCTGAATACC

Downstream 100 bases:

>100_bases
GGCGGCTCGTCCGTGCTGATCGGGTACGGCAGCCGGGCCGGGTGAAGTAAAATGGCGGGTCCGCTGGCATGTCGCCGGCC
CCGCACTTCCCACACCGCAA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MADTLFSDSPDRSRQPLAERLRPRNIDEVIGQQHLLGAGKPLRVAFESGEPHSMILWGPPGVGKTTLARLMADAFDAEFI
ALSAVLSGVKDIREAVDRAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAV
YVLKSLDDAELTQLAQRASEELGGITWQEEALKLIVASADGDGRKLLNNIEIVVRAARNAGATEIDTALLGSALSENLRR
FDKGGDAFYDQISALHKSVRGSDPDAALYWFCRMIDGGADPRYLARRIVRMAWEDIGLADPRAARITLDAAETYERLGSP
EGELALGQALIYLAVAPKSNAGYNAYNAARAFVSKDKSRAVPVHLRNAPTRLMKELGYGHAYRYAHDEPEAYAAGEHYFP
DDLKAQDWYQPVPRGLEGKIAEKLRHLRELDAAWHREHKAKGKPAE

Sequences:

>Translated_446_residues
MADTLFSDSPDRSRQPLAERLRPRNIDEVIGQQHLLGAGKPLRVAFESGEPHSMILWGPPGVGKTTLARLMADAFDAEFI
ALSAVLSGVKDIREAVDRAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAV
YVLKSLDDAELTQLAQRASEELGGITWQEEALKLIVASADGDGRKLLNNIEIVVRAARNAGATEIDTALLGSALSENLRR
FDKGGDAFYDQISALHKSVRGSDPDAALYWFCRMIDGGADPRYLARRIVRMAWEDIGLADPRAARITLDAAETYERLGSP
EGELALGQALIYLAVAPKSNAGYNAYNAARAFVSKDKSRAVPVHLRNAPTRLMKELGYGHAYRYAHDEPEAYAAGEHYFP
DDLKAQDWYQPVPRGLEGKIAEKLRHLRELDAAWHREHKAKGKPAE
>Mature_445_residues
ADTLFSDSPDRSRQPLAERLRPRNIDEVIGQQHLLGAGKPLRVAFESGEPHSMILWGPPGVGKTTLARLMADAFDAEFIA
LSAVLSGVKDIREAVDRAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVY
VLKSLDDAELTQLAQRASEELGGITWQEEALKLIVASADGDGRKLLNNIEIVVRAARNAGATEIDTALLGSALSENLRRF
DKGGDAFYDQISALHKSVRGSDPDAALYWFCRMIDGGADPRYLARRIVRMAWEDIGLADPRAARITLDAAETYERLGSPE
GELALGQALIYLAVAPKSNAGYNAYNAARAFVSKDKSRAVPVHLRNAPTRLMKELGYGHAYRYAHDEPEAYAAGEHYFPD
DLKAQDWYQPVPRGLEGKIAEKLRHLRELDAAWHREHKAKGKPAE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=40.3628117913832, Blast_Score=319, Evalue=3e-87,
Organism=Homo sapiens, GI18426904, Length=441, Percent_Identity=36.0544217687075, Blast_Score=262, Evalue=4e-70,
Organism=Escherichia coli, GI1787119, Length=436, Percent_Identity=55.9633027522936, Blast_Score=464, Evalue=1e-132,
Organism=Escherichia coli, GI1786676, Length=249, Percent_Identity=28.9156626506024, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6324111, Length=441, Percent_Identity=39.6825396825397, Blast_Score=295, Evalue=8e-81,
Organism=Drosophila melanogaster, GI17647857, Length=210, Percent_Identity=30.4761904761905, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49264; Mature: 49133

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTLFSDSPDRSRQPLAERLRPRNIDEVIGQQHLLGAGKPLRVAFESGEPHSMILWGPP
CCCCCCCCCCCCCCCHHHHHCCCCCHHHHHCCHHHCCCCCCEEEEEECCCCCEEEEECCC
GVGKTTLARLMADAFDAEFIALSAVLSGVKDIREAVDRAEQFRAHGRRTLVFVDEVHRFN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCC
KSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVYVLKSLDDAELTQLAQRASE
CCCCHHCCCHHHCCCEEEEECCCCCCCEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ELGGITWQEEALKLIVASADGDGRKLLNNIEIVVRAARNAGATEIDTALLGSALSENLRR
HHCCCCCHHHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
FDKGGDAFYDQISALHKSVRGSDPDAALYWFCRMIDGGADPRYLARRIVRMAWEDIGLAD
HHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
PRAARITLDAAETYERLGSPEGELALGQALIYLAVAPKSNAGYNAYNAARAFVSKDKSRA
CCCEEEEECHHHHHHHHCCCCCCHHHHCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCC
VPVHLRNAPTRLMKELGYGHAYRYAHDEPEAYAAGEHYFPDDLKAQDWYQPVPRGLEGKI
CCEEECCCHHHHHHHCCCCCEECCCCCCCCHHCCCCCCCCCCCCCCHHHHHCCCCCCHHH
AEKLRHLRELDAAWHREHKAKGKPAE
HHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ADTLFSDSPDRSRQPLAERLRPRNIDEVIGQQHLLGAGKPLRVAFESGEPHSMILWGPP
CCCCCCCCCCCCCCHHHHHCCCCCHHHHHCCHHHCCCCCCEEEEEECCCCCEEEEECCC
GVGKTTLARLMADAFDAEFIALSAVLSGVKDIREAVDRAEQFRAHGRRTLVFVDEVHRFN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCC
KSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVYVLKSLDDAELTQLAQRASE
CCCCHHCCCHHHCCCEEEEECCCCCCCEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ELGGITWQEEALKLIVASADGDGRKLLNNIEIVVRAARNAGATEIDTALLGSALSENLRR
HHCCCCCHHHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
FDKGGDAFYDQISALHKSVRGSDPDAALYWFCRMIDGGADPRYLARRIVRMAWEDIGLAD
HHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
PRAARITLDAAETYERLGSPEGELALGQALIYLAVAPKSNAGYNAYNAARAFVSKDKSRA
CCCEEEEECHHHHHHHHCCCCCCHHHHCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCC
VPVHLRNAPTRLMKELGYGHAYRYAHDEPEAYAAGEHYFPDDLKAQDWYQPVPRGLEGKI
CCEEECCCHHHHHHHCCCCCEECCCCCCCCHHCCCCCCCCCCCCCCHHHHHCCCCCCHHH
AEKLRHLRELDAAWHREHKAKGKPAE
HHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]