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The map label for this gene is rimM

Identifier: 73542224

GI number: 73542224

Start: 2783730

End: 2784395

Strand: Reverse

Name: rimM

Synonym: Reut_A2539

Alternate gene names: 73542224

Gene position: 2784395-2783730 (Counterclockwise)

Preceding gene: 73542225

Following gene: 73542223

Centisome position: 73.15

GC content: 65.62

Gene sequence:

>666_bases
GTGACTGAACGAAAGCAGGGCGCCGCTGCGCCGAGGCCATTGAACCGGCCCCAAGGCGAGTCGCCGAAGGCGACCAAGCT
GCCGGCGACGCTCTTGTATGCCGATCCGCTGCCAGATGATCTGGTGGAGGTGGGCTATGTCGGTGCTGCCTACGGCATCC
GTGGCTGGATCAAGGTCGAGCCGCATGCCAACGATGCATCCGCATTGCTGCATGCGCGCCGGTGGTGGCTGCTCACGCCG
CCGCAGGCTGGCCTTGTCGCCACCGCGGAAGCATCTCGCGCGCAGGCGGTCTGCGTCCGGGTTGCGCAATCGCGCGAGCA
CAGTGGAACTGTGGTTGCGCAGGCGACCGGCGTATCGGACCGCAATCTGGCCGAGGCGCTCAAGGGCCGTCGCGTGTGGA
TCCGGCGTGCGGACTTTCCCGCGCCGGAAGAGAATGAGTTTTACTGGGTAGACCTGATCGGCTGCGCCGTCAGCAACGAG
CAAGGCGAGTTGCTTGGCGAGGTGTCCGGTCTGATCGATAACGGGGCTCACCAGATCCTGCAGGTGGCTTACGCATTGCC
CGACGGCAAGGCCGGTGAACGGCTGGTTCCGTTTGTCGATGCGTTCCTGCGCACGGTCGACACCGCGGGCAAGCGCATCG
TGGTGGACTGGGGGCTCGACTACTGA

Upstream 100 bases:

>100_bases
GCCGACCGTTGCTCGCCTGGTCAAGCAGAACGCCGCCAAGGCCGCTGCCTGATAGCAGTCTGTTACGCGCTCCCTGGCGG
GGCGCGTTTTCATTGCACAC

Downstream 100 bases:

>100_bases
ATTGCCGAAGCCGGCAGTTCGGACGGGGAGGGCGGATGCAGTTCGATGTAATCACGCTGTTTCCCGAAATGTTTCGCGCG
CTGACCGACTGGGGTATCAC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MTERKQGAAAPRPLNRPQGESPKATKLPATLLYADPLPDDLVEVGYVGAAYGIRGWIKVEPHANDASALLHARRWWLLTP
PQAGLVATAEASRAQAVCVRVAQSREHSGTVVAQATGVSDRNLAEALKGRRVWIRRADFPAPEENEFYWVDLIGCAVSNE
QGELLGEVSGLIDNGAHQILQVAYALPDGKAGERLVPFVDAFLRTVDTAGKRIVVDWGLDY

Sequences:

>Translated_221_residues
MTERKQGAAAPRPLNRPQGESPKATKLPATLLYADPLPDDLVEVGYVGAAYGIRGWIKVEPHANDASALLHARRWWLLTP
PQAGLVATAEASRAQAVCVRVAQSREHSGTVVAQATGVSDRNLAEALKGRRVWIRRADFPAPEENEFYWVDLIGCAVSNE
QGELLGEVSGLIDNGAHQILQVAYALPDGKAGERLVPFVDAFLRTVDTAGKRIVVDWGLDY
>Mature_220_residues
TERKQGAAAPRPLNRPQGESPKATKLPATLLYADPLPDDLVEVGYVGAAYGIRGWIKVEPHANDASALLHARRWWLLTPP
QAGLVATAEASRAQAVCVRVAQSREHSGTVVAQATGVSDRNLAEALKGRRVWIRRADFPAPEENEFYWVDLIGCAVSNEQ
GELLGEVSGLIDNGAHQILQVAYALPDGKAGERLVPFVDAFLRTVDTAGKRIVVDWGLDY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=182, Percent_Identity=30.7692307692308, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_CUPPJ (Q46Y83)

Other databases:

- EMBL:   CP000090
- RefSeq:   YP_296744.1
- ProteinModelPortal:   Q46Y83
- SMR:   Q46Y83
- GeneID:   3609311
- GenomeReviews:   CP000090_GR
- KEGG:   reu:Reut_A2539
- NMPDR:   fig|264198.3.peg.3283
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- ProtClustDB:   PRK00122
- BioCyc:   REUT264198:REUT_A2539-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 23971; Mature: 23840

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTERKQGAAAPRPLNRPQGESPKATKLPATLLYADPLPDDLVEVGYVGAAYGIRGWIKVE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHCCHHHHCCCCEEEEEC
PHANDASALLHARRWWLLTPPQAGLVATAEASRAQAVCVRVAQSREHSGTVVAQATGVSD
CCCCHHHHHHHHHHEEEECCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
RNLAEALKGRRVWIRRADFPAPEENEFYWVDLIGCAVSNEQGELLGEVSGLIDNGAHQIL
HHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCCHHHHHH
QVAYALPDGKAGERLVPFVDAFLRTVDTAGKRIVVDWGLDY
HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
>Mature Secondary Structure 
TERKQGAAAPRPLNRPQGESPKATKLPATLLYADPLPDDLVEVGYVGAAYGIRGWIKVE
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHCCHHHHCCCCEEEEEC
PHANDASALLHARRWWLLTPPQAGLVATAEASRAQAVCVRVAQSREHSGTVVAQATGVSD
CCCCHHHHHHHHHHEEEECCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
RNLAEALKGRRVWIRRADFPAPEENEFYWVDLIGCAVSNEQGELLGEVSGLIDNGAHQIL
HHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCCHHHHHH
QVAYALPDGKAGERLVPFVDAFLRTVDTAGKRIVVDWGLDY
HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA