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The map label for this gene is yfdE [H]

Identifier: 73540552

GI number: 73540552

Start: 919342

End: 920643

Strand: Reverse

Name: yfdE [H]

Synonym: Reut_A0849

Alternate gene names: 73540552

Gene position: 920643-919342 (Counterclockwise)

Preceding gene: 73540555

Following gene: 73540551

Centisome position: 24.19

GC content: 66.97

Gene sequence:

>1302_bases
GTGCAGCGTGTCCGCGCCAGCCCATCCGCAGGCTTCGGCATCCCCCTTTACACCCTCTGCAAACGGAGCCCCCTCGCTGC
CATGGGAGCCTTAAGCCATCTCCGCGTTCTCGACCTGACCCGCGTCCTTGCCGGGCCTTGGTGTGCCCAGAACCTTGCCG
ATTTCGGCGCCGATGTCATCAAGATCGAACGCCCCGGCGCCGGGGATGACACCCGTACCTGGGGACCGCCGTGGCTCAAG
GCCACCGACGGCAGCGATACCGCAGAAGCCGCCTACTACCTGGCAGCGAACCGCAACAAGCGTTCGGTGACCTGCGATAT
TTCATCGCCCGAAGGCCAGCAACTCGTGCGCGAACTCGCCGCGCAGAGTGATGTGGTGCTGGAAAACTACAAGGTCGGCC
AGTTGAAGAAGTACGGGCTCGACTATGCATCGCTGAAGGCGGTGAAGCCGGACATCATTTATTGCTCGGTGACCGGCTTC
GGCCAGAGCGGCCCATATGCGGCCCGCCCCGGCTATGACTTCATCATCCAGGGCATGGGCGGCTTCATGAGCCTGACCGG
CGAGCGCGACGACCTGCCGGGCGGCGGCCCGCAGAAGGCCGGCGTGGCGATCTCCGACCTGATGACCGGCCAGTACGCGA
CTATCGCCGTGCTGGCCGCGCTGGCGCACCGCGACCGCACGGGCGAAGGCCAGTACATCGACATGGCGCTGCTCGACGTG
CAGGTCGCCATGCTGGCCAATATGAATACCAACTACTTGGCGAGCGGCCAGGCTCCGCGCCGCTGGGGCAATGCGCACCC
GAACATCGTCCCGTACCAGACCTTCCAGGCCGCCGACGGCTGGCTGATCGTCGCGGTCGGCAACGACGGGCAGTTCCGCA
AGTTCGTCAACGACGGCGGCCAGCCGGAACTGGCGGATGATCCGCGCTTTTCGACCAACCCGCTGCGCGTGGCCAACCGC
GACGTGCTGGTGCCGATCCTGGCCGACATGGTGCGCACGCGTACGCGCGCACAGTGGATCCGCGACCTGGAAGCGGCCGG
CGTGCCGTGCGGCCCGATCAACTCGCTCGACGAAGTCTTCGAGGACGAGCAGGTCAAGGCCCGCGGCCTGCGCGTGGACT
TGCCGCACCCGAGCGCCGGCGAGGTCAAGCTGGTCGGCAGCCCGATCAAGATGAGCGCCACGCCGCCCGAGGCGCTGCGC
CATCCGCCGCTGCTTGGCGAGCACACCGACACCATCCTGGCCGAGTCACTGGGCTACAGCCCCGAGAAGATCGCGGCGCT
ACGCGCCAAGGGCGTGGTATAA

Upstream 100 bases:

>100_bases
GCCACCGCGCCGCGCGATCGGTCGGTTATCGCCCAAATCCCGACTTGCGAAGCGGCGCATAAGGCACCAGAAGGCGCCAT
ATACCAGCCCCGGTGGTAGA

Downstream 100 bases:

>100_bases
GAGCCACTTGCGCCGGGCCTGGCGCAATGCGCAGTTGTTGATCAGTCGTCCCCCGAAGCTGTTCCGCGCGACGAGGATTG
CCTTGCGCTGGCGCCCCGAG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MQRVRASPSAGFGIPLYTLCKRSPLAAMGALSHLRVLDLTRVLAGPWCAQNLADFGADVIKIERPGAGDDTRTWGPPWLK
ATDGSDTAEAAYYLAANRNKRSVTCDISSPEGQQLVRELAAQSDVVLENYKVGQLKKYGLDYASLKAVKPDIIYCSVTGF
GQSGPYAARPGYDFIIQGMGGFMSLTGERDDLPGGGPQKAGVAISDLMTGQYATIAVLAALAHRDRTGEGQYIDMALLDV
QVAMLANMNTNYLASGQAPRRWGNAHPNIVPYQTFQAADGWLIVAVGNDGQFRKFVNDGGQPELADDPRFSTNPLRVANR
DVLVPILADMVRTRTRAQWIRDLEAAGVPCGPINSLDEVFEDEQVKARGLRVDLPHPSAGEVKLVGSPIKMSATPPEALR
HPPLLGEHTDTILAESLGYSPEKIAALRAKGVV

Sequences:

>Translated_433_residues
MQRVRASPSAGFGIPLYTLCKRSPLAAMGALSHLRVLDLTRVLAGPWCAQNLADFGADVIKIERPGAGDDTRTWGPPWLK
ATDGSDTAEAAYYLAANRNKRSVTCDISSPEGQQLVRELAAQSDVVLENYKVGQLKKYGLDYASLKAVKPDIIYCSVTGF
GQSGPYAARPGYDFIIQGMGGFMSLTGERDDLPGGGPQKAGVAISDLMTGQYATIAVLAALAHRDRTGEGQYIDMALLDV
QVAMLANMNTNYLASGQAPRRWGNAHPNIVPYQTFQAADGWLIVAVGNDGQFRKFVNDGGQPELADDPRFSTNPLRVANR
DVLVPILADMVRTRTRAQWIRDLEAAGVPCGPINSLDEVFEDEQVKARGLRVDLPHPSAGEVKLVGSPIKMSATPPEALR
HPPLLGEHTDTILAESLGYSPEKIAALRAKGVV
>Mature_433_residues
MQRVRASPSAGFGIPLYTLCKRSPLAAMGALSHLRVLDLTRVLAGPWCAQNLADFGADVIKIERPGAGDDTRTWGPPWLK
ATDGSDTAEAAYYLAANRNKRSVTCDISSPEGQQLVRELAAQSDVVLENYKVGQLKKYGLDYASLKAVKPDIIYCSVTGF
GQSGPYAARPGYDFIIQGMGGFMSLTGERDDLPGGGPQKAGVAISDLMTGQYATIAVLAALAHRDRTGEGQYIDMALLDV
QVAMLANMNTNYLASGQAPRRWGNAHPNIVPYQTFQAADGWLIVAVGNDGQFRKFVNDGGQPELADDPRFSTNPLRVANR
DVLVPILADMVRTRTRAQWIRDLEAAGVPCGPINSLDEVFEDEQVKARGLRVDLPHPSAGEVKLVGSPIKMSATPPEALR
HPPLLGEHTDTILAESLGYSPEKIAALRAKGVV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=423, Percent_Identity=43.2624113475177, Blast_Score=365, Evalue=1e-101,
Organism=Homo sapiens, GI300863124, Length=449, Percent_Identity=40.7572383073497, Blast_Score=351, Evalue=7e-97,
Organism=Homo sapiens, GI300863126, Length=423, Percent_Identity=38.0614657210402, Blast_Score=304, Evalue=1e-82,
Organism=Homo sapiens, GI13376042, Length=449, Percent_Identity=37.4164810690423, Blast_Score=303, Evalue=2e-82,
Organism=Homo sapiens, GI266456254, Length=407, Percent_Identity=26.7813267813268, Blast_Score=145, Evalue=1e-34,
Organism=Homo sapiens, GI42794625, Length=407, Percent_Identity=26.7813267813268, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI266458397, Length=272, Percent_Identity=29.0441176470588, Blast_Score=112, Evalue=8e-25,
Organism=Homo sapiens, GI266458393, Length=273, Percent_Identity=29.6703296703297, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI266458395, Length=163, Percent_Identity=31.9018404907975, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI42822893, Length=163, Percent_Identity=31.9018404907975, Blast_Score=89, Evalue=8e-18,
Organism=Escherichia coli, GI87082093, Length=388, Percent_Identity=34.020618556701, Blast_Score=242, Evalue=4e-65,
Organism=Escherichia coli, GI1788717, Length=425, Percent_Identity=30.8235294117647, Blast_Score=181, Evalue=7e-47,
Organism=Escherichia coli, GI1786222, Length=417, Percent_Identity=24.4604316546763, Blast_Score=95, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI32564160, Length=353, Percent_Identity=24.6458923512748, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=343, Percent_Identity=24.4897959183673, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=48.1389578163772, Blast_Score=376, Evalue=1e-104,
Organism=Drosophila melanogaster, GI24585488, Length=352, Percent_Identity=25.5681818181818, Blast_Score=100, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 46565; Mature: 46565

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRVRASPSAGFGIPLYTLCKRSPLAAMGALSHLRVLDLTRVLAGPWCAQNLADFGADVI
CCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEE
KIERPGAGDDTRTWGPPWLKATDGSDTAEAAYYLAANRNKRSVTCDISSPEGQQLVRELA
EEECCCCCCCCCCCCCCCEEECCCCCHHHEEEEEEECCCCCEEEEECCCCCHHHHHHHHH
AQSDVVLENYKVGQLKKYGLDYASLKAVKPDIIYCSVTGFGQSGPYAARPGYDFIIQGMG
HCCCEEEECCCCCCHHHHCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHEEEECCC
GFMSLTGERDDLPGGGPQKAGVAISDLMTGQYATIAVLAALAHRDRTGEGQYIDMALLDV
CEEEECCCCCCCCCCCCCCCCEEHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHH
QVAMLANMNTNYLASGQAPRRWGNAHPNIVPYQTFQAADGWLIVAVGNDGQFRKFVNDGG
HHHHHHCCCCCEEECCCCCHHCCCCCCCCCCCCEEECCCCEEEEEECCCCCHHHHHCCCC
QPELADDPRFSTNPLRVANRDVLVPILADMVRTRTRAQWIRDLEAAGVPCGPINSLDEVF
CCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
EDEQVKARGLRVDLPHPSAGEVKLVGSPIKMSATPPEALRHPPLLGEHTDTILAESLGYS
CCCHHHHCCCEEECCCCCCCCEEEECCCEEECCCCHHHHCCCCCCCCCHHHHHHHHHCCC
PEKIAALRAKGVV
HHHHHHHHHCCCC
>Mature Secondary Structure
MQRVRASPSAGFGIPLYTLCKRSPLAAMGALSHLRVLDLTRVLAGPWCAQNLADFGADVI
CCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEE
KIERPGAGDDTRTWGPPWLKATDGSDTAEAAYYLAANRNKRSVTCDISSPEGQQLVRELA
EEECCCCCCCCCCCCCCCEEECCCCCHHHEEEEEEECCCCCEEEEECCCCCHHHHHHHHH
AQSDVVLENYKVGQLKKYGLDYASLKAVKPDIIYCSVTGFGQSGPYAARPGYDFIIQGMG
HCCCEEEECCCCCCHHHHCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHEEEECCC
GFMSLTGERDDLPGGGPQKAGVAISDLMTGQYATIAVLAALAHRDRTGEGQYIDMALLDV
CEEEECCCCCCCCCCCCCCCCEEHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHH
QVAMLANMNTNYLASGQAPRRWGNAHPNIVPYQTFQAADGWLIVAVGNDGQFRKFVNDGG
HHHHHHCCCCCEEECCCCCHHCCCCCCCCCCCCEEECCCCEEEEEECCCCCHHHHHCCCC
QPELADDPRFSTNPLRVANRDVLVPILADMVRTRTRAQWIRDLEAAGVPCGPINSLDEVF
CCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
EDEQVKARGLRVDLPHPSAGEVKLVGSPIKMSATPPEALRHPPLLGEHTDTILAESLGYS
CCCHHHHCCCEEECCCCCCCCEEEECCCEEECCCCHHHHCCCCCCCCCHHHHHHHHHCCC
PEKIAALRAKGVV
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]