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The map label for this gene is sodB [H]

Identifier: 73540303

GI number: 73540303

Start: 648496

End: 649077

Strand: Direct

Name: sodB [H]

Synonym: Reut_A0597

Alternate gene names: 73540303

Gene position: 648496-649077 (Clockwise)

Preceding gene: 73540302

Following gene: 73540304

Centisome position: 17.04

GC content: 60.48

Gene sequence:

>582_bases
ATGGAACACAAGCTCCCCCCGCTGCCGTACGCGCATGATGCCCTGGCTCCGCACATCTCCAAGGAGACGCTGGAGTTCCA
CCACGACAAGCATCACCAGACGTACGTCACCAACCTGAACAACCTCATCAAGGGCACCGAGTTCGAAAACGCGACCCTCG
AAGAGATCACCAAAAAGTCGTCGGGCGGCATCTTCAACAACGCCGCCCAAGTGTGGAACCACACGTTCTACTGGGAATCG
ATGAAGCCCAACGGCGGCGGCCAGCCGACCGGCGCGCTGGCTGATGCCATCAACGCCAAGTGGGGTTCGTTCGACAAGTT
CAAGGAAGAGTTCACGAAGACCGCGGTTGGCACCTTCGGTTCGGGTTGGGCATGGCTGGTCAAGAAGGCCGATGGCTCGC
TGGACCTGTTGTCCACGTCCAACGCCGCCACGCCGCTGACCACCGACGCCAAGCCGCTGCTGACCTGCGACGTGTGGGAA
CACGCCTACTACATCGACTACCGCAATGCCCGTCCGAAGTACGTCGAGGCATTCTGGAACGTCGTGAACTGGGACTTCGC
CGCTCAGAACTTCGCAGGCTGA

Upstream 100 bases:

>100_bases
ATGACCCCAGGGGGCTTTGCGCCGCGGTTTGCGTGGGTCTTGCAAGTCTCCTACAATCGGCAATTCCTCGACCACAACCC
CAACCCACAGAGACAGAACA

Downstream 100 bases:

>100_bases
TTCGTTTCAGCGCATACAAGGCCCCGAAATGTTCGGGGCTTTTTTTCGCTTTCGATCGGACCGCCCGTATTGCCGCCCAT
CAATCGTGGATGTGAATCGG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MEHKLPPLPYAHDALAPHISKETLEFHHDKHHQTYVTNLNNLIKGTEFENATLEEITKKSSGGIFNNAAQVWNHTFYWES
MKPNGGGQPTGALADAINAKWGSFDKFKEEFTKTAVGTFGSGWAWLVKKADGSLDLLSTSNAATPLTTDAKPLLTCDVWE
HAYYIDYRNARPKYVEAFWNVVNWDFAAQNFAG

Sequences:

>Translated_193_residues
MEHKLPPLPYAHDALAPHISKETLEFHHDKHHQTYVTNLNNLIKGTEFENATLEEITKKSSGGIFNNAAQVWNHTFYWES
MKPNGGGQPTGALADAINAKWGSFDKFKEEFTKTAVGTFGSGWAWLVKKADGSLDLLSTSNAATPLTTDAKPLLTCDVWE
HAYYIDYRNARPKYVEAFWNVVNWDFAAQNFAG
>Mature_193_residues
MEHKLPPLPYAHDALAPHISKETLEFHHDKHHQTYVTNLNNLIKGTEFENATLEEITKKSSGGIFNNAAQVWNHTFYWES
MKPNGGGQPTGALADAINAKWGSFDKFKEEFTKTAVGTFGSGWAWLVKKADGSLDLLSTSNAATPLTTDAKPLLTCDVWE
HAYYIDYRNARPKYVEAFWNVVNWDFAAQNFAG

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=201, Percent_Identity=43.7810945273632, Blast_Score=169, Evalue=2e-42,
Organism=Homo sapiens, GI67782305, Length=201, Percent_Identity=43.7810945273632, Blast_Score=169, Evalue=2e-42,
Organism=Homo sapiens, GI67782309, Length=193, Percent_Identity=38.860103626943, Blast_Score=131, Evalue=3e-31,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=68.9119170984456, Blast_Score=289, Evalue=1e-79,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=46.3768115942029, Blast_Score=176, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI17506561, Length=201, Percent_Identity=37.8109452736318, Blast_Score=141, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI17569479, Length=194, Percent_Identity=36.5979381443299, Blast_Score=133, Evalue=5e-32,
Organism=Saccharomyces cerevisiae, GI6321796, Length=200, Percent_Identity=37.5, Blast_Score=126, Evalue=2e-30,
Organism=Drosophila melanogaster, GI17136812, Length=195, Percent_Identity=42.0512820512821, Blast_Score=153, Evalue=6e-38,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21664; Mature: 21664

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHKLPPLPYAHDALAPHISKETLEFHHDKHHQTYVTNLNNLIKGTEFENATLEEITKKS
CCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHC
SGGIFNNAAQVWNHTFYWESMKPNGGGQPTGALADAINAKWGSFDKFKEEFTKTAVGTFG
CCCCCHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
SGWAWLVKKADGSLDLLSTSNAATPLTTDAKPLLTCDVWEHAYYIDYRNARPKYVEAFWN
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHH
VVNWDFAAQNFAG
HHHHCHHHHCCCC
>Mature Secondary Structure
MEHKLPPLPYAHDALAPHISKETLEFHHDKHHQTYVTNLNNLIKGTEFENATLEEITKKS
CCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHC
SGGIFNNAAQVWNHTFYWESMKPNGGGQPTGALADAINAKWGSFDKFKEEFTKTAVGTFG
CCCCCHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
SGWAWLVKKADGSLDLLSTSNAATPLTTDAKPLLTCDVWEHAYYIDYRNARPKYVEAFWN
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHH
VVNWDFAAQNFAG
HHHHCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]