| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is arnT [H]
Identifier: 71908371
GI number: 71908371
Start: 2957230
End: 2958834
Strand: Reverse
Name: arnT [H]
Synonym: Daro_2758
Alternate gene names: 71908371
Gene position: 2958834-2957230 (Counterclockwise)
Preceding gene: 71908372
Following gene: 71908369
Centisome position: 65.74
GC content: 52.15
Gene sequence:
>1605_bases GTGACCAACTGGCTATTGGATTTGCATAATCTGCCGTTGCTGCCTGAGAAAAAGCGGTGGCTTCTCATCTTTCTCATCTG CACACTGTGGCTCGGAATAACAGCCGGGCTCCGGCCGTTGATGATTCCCGACGAGGGGCGATATGTGGGCGTCGCATGGG AAATGTTGCAGTCGGGTAGCCTGGCAACGCCATTGCTTGACGGAATGCCATATTTCCACAAGCCGCCGCTGTTCTATTGG CTGACTCTCTTCAGCATAAAAATATTTGGTGCGAATGTTTGGAGTGCCCGGTTTGCCTCTATTTTGGCGGCAAGTGGCGC TGCGACTGGTTTGTTTGTCTTCGTCCGCCGATACGTGAACGAACGTACGGCTGCATTCACCCTTGTCGTACTCCTGACCC AGCCTTTTTTCTTCGCTGGCGCACAGTTTGCCAATCTTGACATGCTGGTCGCCGCAATGATCTCCCTGTGCATTCTGTCG GCGGCGGATGTCGTTTTTCGGGCCGAAGCAGGAGAGAAATACCGGGGGCGCTTGTCAGTCGCTTATGCCTTTGCTGCCCT TGGTCTTTTGGCCAAAGGGCTTATCGGCATTGTTCTGCCCGGTGCCGTACTTTTTGTGTGGATTCTGCTCACCCGGAGAT TCAAAAGCATCCGGGTTCTATTGTCTCCAGTCGGGATTGGCCTTTTCGGATTGATTGGATTGCCTTGGTTCATGCTGATG CAACAGCATTTCCACGGTTTTTTTGACTACTTTGTGATTTACCACCATTTTCAGAGATTTTCCGAAACTGGATTCAATAA TCGACAGCCTCTCTGGTTCTATGTTCCGACCTTGTTTGCCCTGACCTTGCCGTGGTCGCCTTGGTTGTGGCAGGCCGTGC GTACGTTTAATACCCCACGCGAATCCAGACACCGCGACATTCAATGGTTGATGCTGTGCTGGGTCATTCTTATCCTGGTG TTCTTTTCGATACCGGTTTCCAAACCAGTCGGCTACATCATGCCGGCGCTTCCCGCCTTGGCGTTCCTGATCGCAGCCCC ATTTGCACGTCAATTGGAGCCCCAACGATTGCTCAAGGCACAGCGATATTTGAGCTTGAACACGATCGCGGGGGCCGGGG TTTGTGTTGCCGTTCTCATCGGTGTCGCCAACCACGATTATGTCGCTTCGGCAAACCAGCTTGCTCCAAAGATTCGTGAG GTCTTTTCTGAGCATGACCGTGTCGCCATGATTGAACGCTATCAATATGACTTGCCGTTTTATCTTCGGCTGGATAGGCC TGCATGGGTTATCAGCAACTGGGACGATCCATCCATTTCAGCGCATGACAATTGGCGTAAGGAACTCTACGACGCCAAAC AATTCGATCACGCTGCCGGTATCGATACTTTGCTGACTTACGCTCAATTCAGTCAGCGTATCTGTAACGTACGCGAGGTC GAATCGATATGGGTTTGGGGTACAGAAGCAGACCGGCAACGATTAGACATTCTCGCCAATCTCACCCCGTATGCCAGCCA CAACGAACAAAGAGTTTGGCGGCTGACGCCGGAGATCAGGCTGAATTATTGCGAAAGGCCCACGAACGGCTCAGCACAAA CGTAA
Upstream 100 bases:
>100_bases GGAGAATATCTCGCACAAGTATTTGAAGAAGTAAAAGGACGCCCGTTGTATTTGATTCGCCAACGTCTTGGCTCAGGCTC TTTCTACTCGAGCTAATTCC
Downstream 100 bases:
>100_bases GTGCCGCGACAGCGACCAGGACGCAGAAAAGCAGTATTTCGTAACTGACCTCTGTGTTCTTTAGCAAGAAAGCATATGCG CTTTCATTGACCAAGAATCC
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase [H]
Number of amino acids: Translated: 534; Mature: 533
Protein sequence:
>534_residues MTNWLLDLHNLPLLPEKKRWLLIFLICTLWLGITAGLRPLMIPDEGRYVGVAWEMLQSGSLATPLLDGMPYFHKPPLFYW LTLFSIKIFGANVWSARFASILAASGAATGLFVFVRRYVNERTAAFTLVVLLTQPFFFAGAQFANLDMLVAAMISLCILS AADVVFRAEAGEKYRGRLSVAYAFAALGLLAKGLIGIVLPGAVLFVWILLTRRFKSIRVLLSPVGIGLFGLIGLPWFMLM QQHFHGFFDYFVIYHHFQRFSETGFNNRQPLWFYVPTLFALTLPWSPWLWQAVRTFNTPRESRHRDIQWLMLCWVILILV FFSIPVSKPVGYIMPALPALAFLIAAPFARQLEPQRLLKAQRYLSLNTIAGAGVCVAVLIGVANHDYVASANQLAPKIRE VFSEHDRVAMIERYQYDLPFYLRLDRPAWVISNWDDPSISAHDNWRKELYDAKQFDHAAGIDTLLTYAQFSQRICNVREV ESIWVWGTEADRQRLDILANLTPYASHNEQRVWRLTPEIRLNYCERPTNGSAQT
Sequences:
>Translated_534_residues MTNWLLDLHNLPLLPEKKRWLLIFLICTLWLGITAGLRPLMIPDEGRYVGVAWEMLQSGSLATPLLDGMPYFHKPPLFYW LTLFSIKIFGANVWSARFASILAASGAATGLFVFVRRYVNERTAAFTLVVLLTQPFFFAGAQFANLDMLVAAMISLCILS AADVVFRAEAGEKYRGRLSVAYAFAALGLLAKGLIGIVLPGAVLFVWILLTRRFKSIRVLLSPVGIGLFGLIGLPWFMLM QQHFHGFFDYFVIYHHFQRFSETGFNNRQPLWFYVPTLFALTLPWSPWLWQAVRTFNTPRESRHRDIQWLMLCWVILILV FFSIPVSKPVGYIMPALPALAFLIAAPFARQLEPQRLLKAQRYLSLNTIAGAGVCVAVLIGVANHDYVASANQLAPKIRE VFSEHDRVAMIERYQYDLPFYLRLDRPAWVISNWDDPSISAHDNWRKELYDAKQFDHAAGIDTLLTYAQFSQRICNVREV ESIWVWGTEADRQRLDILANLTPYASHNEQRVWRLTPEIRLNYCERPTNGSAQT >Mature_533_residues TNWLLDLHNLPLLPEKKRWLLIFLICTLWLGITAGLRPLMIPDEGRYVGVAWEMLQSGSLATPLLDGMPYFHKPPLFYWL TLFSIKIFGANVWSARFASILAASGAATGLFVFVRRYVNERTAAFTLVVLLTQPFFFAGAQFANLDMLVAAMISLCILSA ADVVFRAEAGEKYRGRLSVAYAFAALGLLAKGLIGIVLPGAVLFVWILLTRRFKSIRVLLSPVGIGLFGLIGLPWFMLMQ QHFHGFFDYFVIYHHFQRFSETGFNNRQPLWFYVPTLFALTLPWSPWLWQAVRTFNTPRESRHRDIQWLMLCWVILILVF FSIPVSKPVGYIMPALPALAFLIAAPFARQLEPQRLLKAQRYLSLNTIAGAGVCVAVLIGVANHDYVASANQLAPKIREV FSEHDRVAMIERYQYDLPFYLRLDRPAWVISNWDDPSISAHDNWRKELYDAKQFDHAAGIDTLLTYAQFSQRICNVREVE SIWVWGTEADRQRLDILANLTPYASHNEQRVWRLTPEIRLNYCERPTNGSAQT
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=331, Percent_Identity=30.5135951661631, Blast_Score=117, Evalue=2e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 61086; Mature: 60955
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNWLLDLHNLPLLPEKKRWLLIFLICTLWLGITAGLRPLMIPDEGRYVGVAWEMLQSGS CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEHHHHHHHHCCC LATPLLDGMPYFHKPPLFYWLTLFSIKIFGANVWSARFASILAASGAATGLFVFVRRYVN CCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH ERTAAFTLVVLLTQPFFFAGAQFANLDMLVAAMISLCILSAADVVFRAEAGEKYRGRLSV HHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHH AYAFAALGLLAKGLIGIVLPGAVLFVWILLTRRFKSIRVLLSPVGIGLFGLIGLPWFMLM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQHFHGFFDYFVIYHHFQRFSETGFNNRQPLWFYVPTLFALTLPWSPWLWQAVRTFNTPR HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHCCCCH ESRHRDIQWLMLCWVILILVFFSIPVSKPVGYIMPALPALAFLIAAPFARQLEPQRLLKA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHH QRYLSLNTIAGAGVCVAVLIGVANHDYVASANQLAPKIREVFSEHDRVAMIERYQYDLPF HHHHHHHHHCHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHCCCCCEEHHHHHCCCCCE YLRLDRPAWVISNWDDPSISAHDNWRKELYDAKQFDHAAGIDTLLTYAQFSQRICNVREV EEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHH ESIWVWGTEADRQRLDILANLTPYASHNEQRVWRLTPEIRLNYCERPTNGSAQT CEEEEECCCCHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHCCCCCCCCCCCC >Mature Secondary Structure TNWLLDLHNLPLLPEKKRWLLIFLICTLWLGITAGLRPLMIPDEGRYVGVAWEMLQSGS CCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEHHHHHHHHCCC LATPLLDGMPYFHKPPLFYWLTLFSIKIFGANVWSARFASILAASGAATGLFVFVRRYVN CCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH ERTAAFTLVVLLTQPFFFAGAQFANLDMLVAAMISLCILSAADVVFRAEAGEKYRGRLSV HHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHH AYAFAALGLLAKGLIGIVLPGAVLFVWILLTRRFKSIRVLLSPVGIGLFGLIGLPWFMLM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQHFHGFFDYFVIYHHFQRFSETGFNNRQPLWFYVPTLFALTLPWSPWLWQAVRTFNTPR HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHCCCCH ESRHRDIQWLMLCWVILILVFFSIPVSKPVGYIMPALPALAFLIAAPFARQLEPQRLLKA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHH QRYLSLNTIAGAGVCVAVLIGVANHDYVASANQLAPKIREVFSEHDRVAMIERYQYDLPF HHHHHHHHHCHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHCCCCCEEHHHHHCCCCCE YLRLDRPAWVISNWDDPSISAHDNWRKELYDAKQFDHAAGIDTLLTYAQFSQRICNVREV EEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHH ESIWVWGTEADRQRLDILANLTPYASHNEQRVWRLTPEIRLNYCERPTNGSAQT CEEEEECCCCHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA