| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is hflX [H]
Identifier: 71908333
GI number: 71908333
Start: 2913818
End: 2915224
Strand: Reverse
Name: hflX [H]
Synonym: Daro_2720
Alternate gene names: 71908333
Gene position: 2915224-2913818 (Counterclockwise)
Preceding gene: 71908334
Following gene: 71908332
Centisome position: 64.77
GC content: 60.13
Gene sequence:
>1407_bases ATGGCGGCGCCTTCGGTATTGGCGGGTACTATCTGCCTTTGCCCATTTAAGAGAAGCAATCCCGGAATGCGAAGTGAAGT AGAAGACAAGACCAGATACGCCGTTGCGGCGGCTGTGCAATTACCGAATGTCAGCGATATCGAGTTCGAGGCCTCATTGA CCGAGTTACGCGAACTGGCAAAAACACTGGGCTTCAAGGTGGTCCATACGTTTGTGCAAAAACGCGCCGGGTTCGATACG ACGGGCTACCTGGGCATTGGCAAGCGCCAGGAAATACACGATTTCGTCAATCATGGTGTCGAAGGCGAGGGGGCGATCCC GGGGGCGGCCGCTTTTTCCGGCCAGATCGATGCCATCCTTGTCGACCATGAAATTTCACCGTCACAGGCGCGCAACCTCG AAAAAGAGGTTGGCTGCGAGGTGATGGATCGCACCATGGTGATCCTCGAGATTTTTCACAACAACGCCCGTTCCCGGGCT GCCCGGGCTCAGGTGGAGATCGCGCGCCTTGGCTACATGGCGCCGCGCCTGCGCGAGGCGGCAAAGCTGGCCGGGCCGCA GGGGCGCCAGCGCAGCGGTGCCGGTGGTCGAGGGGGCGGTGAGTCGCACACCGAACTGGATCGCCGCAAAATTCGTGACC GCATCGCCGAACTGCAACAGGAAATCGTTGCCATGGATGTCGAACGCAAGACGCAGCGTGCGCGGCGCCAGGAGCGGCAG GGGCTGGCGGGCGTGGCGCTCGTTGGCTACACCAATGCCGGTAAATCCACCTTGATGCGAGCGCTGACCGGTAGTGAGGT GCTCGTCGCCAATAAACTCTTCGCGACGCTCGACACCACCGTCCGCACCCTCCATCCGGAAAGCGTGCCGCGGGTGCTGG TCAGTGACACTGTCGGCTTCATCAAGAATCTGCCGCACGGCCTGGTTGCCTCTTTCAAGTCAACGCTCGAAGAGGCGCTT GATGCCTCACTGCTGCTTCACGTGATCGATGCGAGCGATCCCGGATTCGAGCGTCAGCTTCAGGTGACCGACGACGTGCT GCACGAGATCGGTGCCGATGCCGTGCCGCGCATTCGGGTCTTCAACAAGATTGACCATGTCGGCGACTCAGAGGCGCAAG CCGAATGCGAAGCAGCATTGCGGGAAAAATATCCGGATTGTGTCGTGATGAGTGCCCGTCGCCCGGATGAGGTCGCCAGG TTGCGCCTGACGATCATCTCGTTTTTCCAGCAAGGCCTGGTTGAAGCTGAACTCTTCCTTCCATGGTCGGCGCAGCAACT GCGTGGGGAGCTTTACGCCAGTTGCGAGGTGCTGGAGGAGCGTGCCGATGAAGAGGGGGCTTTCTTCCGTGTTCGCGGTG AACCCGATACCTTGATGATCCTGCGCGAGCAGTTCGCACAGGCTTGA
Upstream 100 bases:
>100_bases TGATTGGATGCACTCGGGTGCTCGAAGCCCGGGCGACGCGTGGTTTGTATCCCTGATATGGCTGCGGCGAGGCTTTTAGC CTGCGGTTGGACCGCATTCT
Downstream 100 bases:
>100_bases CGCCCTGCTTTTTCAGGCAGGGAGGCGGGCCTATGTACGGTTTTTCGACGGCGATTGGCTGCCGTTCCCGGTTCAAGCAT CGGTACGCCATGCTAGAATC
Product: GTP-binding protein, HSR1-related
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 468; Mature: 467
Protein sequence:
>468_residues MAAPSVLAGTICLCPFKRSNPGMRSEVEDKTRYAVAAAVQLPNVSDIEFEASLTELRELAKTLGFKVVHTFVQKRAGFDT TGYLGIGKRQEIHDFVNHGVEGEGAIPGAAAFSGQIDAILVDHEISPSQARNLEKEVGCEVMDRTMVILEIFHNNARSRA ARAQVEIARLGYMAPRLREAAKLAGPQGRQRSGAGGRGGGESHTELDRRKIRDRIAELQQEIVAMDVERKTQRARRQERQ GLAGVALVGYTNAGKSTLMRALTGSEVLVANKLFATLDTTVRTLHPESVPRVLVSDTVGFIKNLPHGLVASFKSTLEEAL DASLLLHVIDASDPGFERQLQVTDDVLHEIGADAVPRIRVFNKIDHVGDSEAQAECEAALREKYPDCVVMSARRPDEVAR LRLTIISFFQQGLVEAELFLPWSAQQLRGELYASCEVLEERADEEGAFFRVRGEPDTLMILREQFAQA
Sequences:
>Translated_468_residues MAAPSVLAGTICLCPFKRSNPGMRSEVEDKTRYAVAAAVQLPNVSDIEFEASLTELRELAKTLGFKVVHTFVQKRAGFDT TGYLGIGKRQEIHDFVNHGVEGEGAIPGAAAFSGQIDAILVDHEISPSQARNLEKEVGCEVMDRTMVILEIFHNNARSRA ARAQVEIARLGYMAPRLREAAKLAGPQGRQRSGAGGRGGGESHTELDRRKIRDRIAELQQEIVAMDVERKTQRARRQERQ GLAGVALVGYTNAGKSTLMRALTGSEVLVANKLFATLDTTVRTLHPESVPRVLVSDTVGFIKNLPHGLVASFKSTLEEAL DASLLLHVIDASDPGFERQLQVTDDVLHEIGADAVPRIRVFNKIDHVGDSEAQAECEAALREKYPDCVVMSARRPDEVAR LRLTIISFFQQGLVEAELFLPWSAQQLRGELYASCEVLEERADEEGAFFRVRGEPDTLMILREQFAQA >Mature_467_residues AAPSVLAGTICLCPFKRSNPGMRSEVEDKTRYAVAAAVQLPNVSDIEFEASLTELRELAKTLGFKVVHTFVQKRAGFDTT GYLGIGKRQEIHDFVNHGVEGEGAIPGAAAFSGQIDAILVDHEISPSQARNLEKEVGCEVMDRTMVILEIFHNNARSRAA RAQVEIARLGYMAPRLREAAKLAGPQGRQRSGAGGRGGGESHTELDRRKIRDRIAELQQEIVAMDVERKTQRARRQERQG LAGVALVGYTNAGKSTLMRALTGSEVLVANKLFATLDTTVRTLHPESVPRVLVSDTVGFIKNLPHGLVASFKSTLEEALD ASLLLHVIDASDPGFERQLQVTDDVLHEIGADAVPRIRVFNKIDHVGDSEAQAECEAALREKYPDCVVMSARRPDEVARL RLTIISFFQQGLVEAELFLPWSAQQLRGELYASCEVLEERADEEGAFFRVRGEPDTLMILREQFAQA
Specific function: Unknown
COG id: COG2262
COG function: function code R; GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI310133116, Length=190, Percent_Identity=38.4210526315789, Blast_Score=103, Evalue=5e-22, Organism=Homo sapiens, GI310133118, Length=194, Percent_Identity=37.1134020618557, Blast_Score=103, Evalue=5e-22, Organism=Homo sapiens, GI310124269, Length=180, Percent_Identity=37.7777777777778, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI310124267, Length=180, Percent_Identity=37.7777777777778, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI310124171, Length=180, Percent_Identity=37.7777777777778, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI310124169, Length=180, Percent_Identity=37.7777777777778, Blast_Score=101, Evalue=1e-21, Organism=Escherichia coli, GI1790615, Length=420, Percent_Identity=35.2380952380952, Blast_Score=218, Evalue=9e-58, Organism=Caenorhabditis elegans, GI17561038, Length=253, Percent_Identity=32.8063241106719, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI24650079, Length=267, Percent_Identity=34.0823970037453, Blast_Score=109, Evalue=3e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR016496 - InterPro: IPR006073 - InterPro: IPR002917 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 51478; Mature: 51347
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAPSVLAGTICLCPFKRSNPGMRSEVEDKTRYAVAAAVQLPNVSDIEFEASLTELRELA CCCCHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHH KTLGFKVVHTFVQKRAGFDTTGYLGIGKRQEIHDFVNHGVEGEGAIPGAAAFSGQIDAIL HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHCCCCCEEEE VDHEISPSQARNLEKEVGCEVMDRTMVILEIFHNNARSRAARAQVEIARLGYMAPRLREA EECCCCHHHHHCCHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH AKLAGPQGRQRSGAGGRGGGESHTELDRRKIRDRIAELQQEIVAMDVERKTQRARRQERQ HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GLAGVALVGYTNAGKSTLMRALTGSEVLVANKLFATLDTTVRTLHPESVPRVLVSDTVGF CCCEEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH IKNLPHGLVASFKSTLEEALDASLLLHVIDASDPGFERQLQVTDDVLHEIGADAVPRIRV HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHH FNKIDHVGDSEAQAECEAALREKYPDCVVMSARRPDEVARLRLTIISFFQQGLVEAELFL HHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEC PWSAQQLRGELYASCEVLEERADEEGAFFRVRGEPDTLMILREQFAQA CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCC >Mature Secondary Structure AAPSVLAGTICLCPFKRSNPGMRSEVEDKTRYAVAAAVQLPNVSDIEFEASLTELRELA CCCHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHH KTLGFKVVHTFVQKRAGFDTTGYLGIGKRQEIHDFVNHGVEGEGAIPGAAAFSGQIDAIL HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHCCCCCEEEE VDHEISPSQARNLEKEVGCEVMDRTMVILEIFHNNARSRAARAQVEIARLGYMAPRLREA EECCCCHHHHHCCHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH AKLAGPQGRQRSGAGGRGGGESHTELDRRKIRDRIAELQQEIVAMDVERKTQRARRQERQ HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GLAGVALVGYTNAGKSTLMRALTGSEVLVANKLFATLDTTVRTLHPESVPRVLVSDTVGF CCCEEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH IKNLPHGLVASFKSTLEEALDASLLLHVIDASDPGFERQLQVTDDVLHEIGADAVPRIRV HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHH FNKIDHVGDSEAQAECEAALREKYPDCVVMSARRPDEVARLRLTIISFFQQGLVEAELFL HHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEC PWSAQQLRGELYASCEVLEERADEEGAFFRVRGEPDTLMILREQFAQA CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8248183; 7610040; 9278503; 2020545; 3040675 [H]