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The map label for this gene is yciO [H]

Identifier: 71908079

GI number: 71908079

Start: 2661062

End: 2661688

Strand: Reverse

Name: yciO [H]

Synonym: Daro_2461

Alternate gene names: 71908079

Gene position: 2661688-2661062 (Counterclockwise)

Preceding gene: 71908080

Following gene: 71908078

Centisome position: 59.13

GC content: 59.65

Gene sequence:

>627_bases
ATGGCACGCGTTGTCAATATTCATCCCGAATCTCCGCAGCAGCGCCTGCTCGCCCAGGCAGCCGAATTTATTCGCAATGG
CGCCATCGTCGCCTTGCCCACCGACTCCTGCTACGCGCTGGGTTGTCATCTCGGCGACAAGGAAGCGCTGGACAAGATTC
GCCTGATTCGCCAGATGGATGATCGCCATCACCTGACGCTGATGGTCCGCGACCTTTCCGAAATTGCTCATTTCGCCCGG
GTCGACAATGCACAGTACCGTCTGCTCAAGGCGGCGACGCCGGGCAGCTATACCTTCATTCTGGAAGGTTCCAAGGAACT
GCCGCGCCGGGTCATGCATCCGAAACGCAAGACCATCGGCCTGCGTGTGCCGGATCATCCGGTCGCGCTGGCCTTGCTTG
AAGAGTTGAATGAGCCGCTGCTGACAACGACGCTGCAGTTGCCGGGCGACGAGTTTCCGCTGACCGAAGGCTGGGAAATC
CAGGATCGACTTGAAGATCAATTGGAGCTGATTCTCGATGCGGGGCCTTGTGGTACTGAGCCGACAACCGTCATCGATCT
GACCGGTTCGGCACCCGAGCTGATTCGCGCCGGCCGCGGTCCGCTCGAAATCTTCGGTCTGGGCTAA

Upstream 100 bases:

>100_bases
GGCTCCGATTTTCATGGGCCCGAGGAAAGCTATGTGGATCTCGGTAAACTTCCTCAATTGCCTGAAGACCTGAAACCGGT
CTGGCGTCTGGTGTTCTGAC

Downstream 100 bases:

>100_bases
AGGGCCCATGCTCGAAAGCCTGATCCAGACCCTCGCCATATCGGCTCTGCCGGTGATTTTTGCAATCACGCTGCACGAAG
CGGCACACGGCTATGCGGCA

Product: Sua5/YciO/YrdC/YwlC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MARVVNIHPESPQQRLLAQAAEFIRNGAIVALPTDSCYALGCHLGDKEALDKIRLIRQMDDRHHLTLMVRDLSEIAHFAR
VDNAQYRLLKAATPGSYTFILEGSKELPRRVMHPKRKTIGLRVPDHPVALALLEELNEPLLTTTLQLPGDEFPLTEGWEI
QDRLEDQLELILDAGPCGTEPTTVIDLTGSAPELIRAGRGPLEIFGLG

Sequences:

>Translated_208_residues
MARVVNIHPESPQQRLLAQAAEFIRNGAIVALPTDSCYALGCHLGDKEALDKIRLIRQMDDRHHLTLMVRDLSEIAHFAR
VDNAQYRLLKAATPGSYTFILEGSKELPRRVMHPKRKTIGLRVPDHPVALALLEELNEPLLTTTLQLPGDEFPLTEGWEI
QDRLEDQLELILDAGPCGTEPTTVIDLTGSAPELIRAGRGPLEIFGLG
>Mature_207_residues
ARVVNIHPESPQQRLLAQAAEFIRNGAIVALPTDSCYALGCHLGDKEALDKIRLIRQMDDRHHLTLMVRDLSEIAHFARV
DNAQYRLLKAATPGSYTFILEGSKELPRRVMHPKRKTIGLRVPDHPVALALLEELNEPLLTTTLQLPGDEFPLTEGWEIQ
DRLEDQLELILDAGPCGTEPTTVIDLTGSAPELIRAGRGPLEIFGLG

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=53.6585365853659, Blast_Score=236, Evalue=1e-63,
Organism=Drosophila melanogaster, GI78707274, Length=186, Percent_Identity=29.5698924731183, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23078; Mature: 22947

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVVNIHPESPQQRLLAQAAEFIRNGAIVALPTDSCYALGCHLGDKEALDKIRLIRQMD
CCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHCC
DRHHLTLMVRDLSEIAHFARVDNAQYRLLKAATPGSYTFILEGSKELPRRVMHPKRKTIG
CCHHEEHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCHHHHHHHCCCCCCEEE
LRVPDHPVALALLEELNEPLLTTTLQLPGDEFPLTEGWEIQDRLEDQLELILDAGPCGTE
EECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHEEEECCCCCCC
PTTVIDLTGSAPELIRAGRGPLEIFGLG
CCEEEEECCCCHHHHHCCCCCEEEEECC
>Mature Secondary Structure 
ARVVNIHPESPQQRLLAQAAEFIRNGAIVALPTDSCYALGCHLGDKEALDKIRLIRQMD
CEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHCC
DRHHLTLMVRDLSEIAHFARVDNAQYRLLKAATPGSYTFILEGSKELPRRVMHPKRKTIG
CCHHEEHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCHHHHHHHCCCCCCEEE
LRVPDHPVALALLEELNEPLLTTTLQLPGDEFPLTEGWEIQDRLEDQLELILDAGPCGTE
EECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHEEEECCCCCCC
PTTVIDLTGSAPELIRAGRGPLEIFGLG
CCEEEEECCCCHHHHHCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]