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The map label for this gene is rimP

Identifier: 71908072

GI number: 71908072

Start: 2655966

End: 2656406

Strand: Reverse

Name: rimP

Synonym: Daro_2454

Alternate gene names: 71908072

Gene position: 2656406-2655966 (Counterclockwise)

Preceding gene: 71908073

Following gene: 71908071

Centisome position: 59.02

GC content: 50.11

Gene sequence:

>441_bases
ATGGATTTAAACACGCTGCTTGAAACGACTGTTGTTGGTCTGGGTTATGAACTCGTTGATGTCGAGATGTCGCCGCGCGG
TCGTACGATTCGCGTCTTCATCGATGCGCCGGCGAAAGAAACCGGTATTGATGTTGAGGATTGTGCCAAGGTTTCCAATC
AGCTGACGCGTGTTTTCGAAGTCGAGAATTTCGATTTTGATCGTCTTGAAATTTCTTCGCCGGGGCTCGATCGAGTCGTC
AAGAAGGCTGCAGATTTCGAGCGTTTTTCTGGCCAGGAAATTCAAATAAAGGTTCGTATTCCCCAGGGGGGGCGCCGCAA
TTTCCAGGGTGAACTGCTTGGCCTGAAAGATGGCAAGGTTGGTTTGCGCCTGGCAAAAGATGATGTGGAACTGGAATTCA
CCAATATCGAGAAGGCACGTCTGGTGCCTCGTTTCGACTGA

Upstream 100 bases:

>100_bases
AATAAACTCGTTATAATTCACGGGTTTGTTCCTCCCGTCGTTTCTGGCGGGCATCTTTTTATTGTGATGTGGGCGTTTCG
CCCATTTTTTATTTGTGGCT

Downstream 100 bases:

>100_bases
AGGACTAGGAGGTTTTAGCCCATGAGCCGTGAAATTTTGCTGCTGGTCGATGCTCTGGCCCGCGAAAAAAATGTCAGCAA
GGAGATCGTCTTTGGCGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MDLNTLLETTVVGLGYELVDVEMSPRGRTIRVFIDAPAKETGIDVEDCAKVSNQLTRVFEVENFDFDRLEISSPGLDRVV
KKAADFERFSGQEIQIKVRIPQGGRRNFQGELLGLKDGKVGLRLAKDDVELEFTNIEKARLVPRFD

Sequences:

>Translated_146_residues
MDLNTLLETTVVGLGYELVDVEMSPRGRTIRVFIDAPAKETGIDVEDCAKVSNQLTRVFEVENFDFDRLEISSPGLDRVV
KKAADFERFSGQEIQIKVRIPQGGRRNFQGELLGLKDGKVGLRLAKDDVELEFTNIEKARLVPRFD
>Mature_146_residues
MDLNTLLETTVVGLGYELVDVEMSPRGRTIRVFIDAPAKETGIDVEDCAKVSNQLTRVFEVENFDFDRLEISSPGLDRVV
KKAADFERFSGQEIQIKVRIPQGGRRNFQGELLGLKDGKVGLRLAKDDVELEFTNIEKARLVPRFD

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=148, Percent_Identity=37.8378378378378, Blast_Score=92, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_DECAR (Q47D92)

Other databases:

- EMBL:   CP000089
- RefSeq:   YP_285659.1
- ProteinModelPortal:   Q47D92
- SMR:   Q47D92
- STRING:   Q47D92
- GeneID:   3568227
- GenomeReviews:   CP000089_GR
- KEGG:   dar:Daro_2454
- NMPDR:   fig|159087.4.peg.2820
- eggNOG:   COG0779
- HOGENOM:   HBG668072
- OMA:   VMDVEDP
- ProtClustDB:   PRK00092
- BioCyc:   DARO159087:DARO_2454-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 16471; Mature: 16471

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNTLLETTVVGLGYELVDVEMSPRGRTIRVFIDAPAKETGIDVEDCAKVSNQLTRVFE
CCHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHEEEE
VENFDFDRLEISSPGLDRVVKKAADFERFSGQEIQIKVRIPQGGRRNFQGELLGLKDGKV
ECCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCCCE
GLRLAKDDVELEFTNIEKARLVPRFD
EEEEECCCCEEEEECCCHHCCCCCCC
>Mature Secondary Structure
MDLNTLLETTVVGLGYELVDVEMSPRGRTIRVFIDAPAKETGIDVEDCAKVSNQLTRVFE
CCHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHEEEE
VENFDFDRLEISSPGLDRVVKKAADFERFSGQEIQIKVRIPQGGRRNFQGELLGLKDGKV
ECCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCCCE
GLRLAKDDVELEFTNIEKARLVPRFD
EEEEECCCCEEEEECCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA