Definition Dechloromonas aromatica RCB, complete genome.
Accession NC_007298
Length 4,501,104

Click here to switch to the map view.

The map label for this gene is 71907858

Identifier: 71907858

GI number: 71907858

Start: 2415706

End: 2417370

Strand: Reverse

Name: 71907858

Synonym: Daro_2236

Alternate gene names: NA

Gene position: 2417370-2415706 (Counterclockwise)

Preceding gene: 71907859

Following gene: 71907857

Centisome position: 53.71

GC content: 58.98

Gene sequence:

>1665_bases
ATGACAGCGACCGTTGTGGCATCTGTGGATGCCAATCCCCCCTCTGAACAGTTTCAGGCCGTCTCACTCTGGACTTTCGT
CCACCTGAAAACACCTCGCTTTACTTCGGAAGCAGCACTCGATGTGGTTCGGCACCTGATGCCAACCGCTGACGAGGATC
CCAAGCATCTCGCGAAACGCCTGCGTAAATCCCTGCTAGAGCACGGCATCGCCCTCAAGCACGTCAATTCGCTCGATGCG
GCGGCGCGCCTGCTTGGGCACGCCGATTGGCACGCGGCAAATCGCGCGCAGCCGAAGACGACCCTCAAGCTGACGCCGAT
GGCCGATGCCGCGGAAGAGTTGTTCGAAGACTGGCGCCAACTTGCACCACGTCTGTGTGCATGGTGCGATGCATGGCTTC
GGGGAAAAGGTGGCAAGGTCTTTGAGGTGCGTTTCGGCCCCGGCTATGTCATGGTCAGCATTCCTACACCCAAGGAGGGT
GGGCCGGCAGGAAGCATGGACGAGCTGCCGCTGCTTATGGTCAATCCCGTCGGGGATGCCGAACATTGGTTGCAGGAAGC
CCCAGCGGCATTCGAAACTCTGCGCCGTCACTTGGAAGAGTCCGGACAGGCAGTTCTGGACGGTGTTGCCGTGCTGCAGT
TATGCAATCGCAACAGTCGGGAAGCATTGGACCGTTTGCCGTCGATACCGCAGCCGGTGCGACCAACGGATGCCGGCAAT
TCGGAATTGGTCTTGCTGCGCGAGGACGATGAGCTCATGCCGGGGTCGGGCTACGAGATTGCCCGTGGCGACGAGCTGAC
ATGCTGGGCACAGCTCCATCTGGCGATGAAGGACCACAAGTCCGAGGGAATTACTTTGGATGACGGGGCCTGGCGGATCG
GTGGGGGCCGCTATGTATGGCAGTTATCGACAATCCATCCCAAGGACTTTGTCCCCGGGCTGGTGATCACGATGCTGAGC
GAGACCGATTCGGAGAAGCTGCTGCGTCGCTACAAGCTTGTACAGCGGGTACTTTCGCAAAACTTCAAGCATCATGAGGT
GACCAAGCGCTTACAGTACTTGAGTGGCCCGTCGGATATCTACCGTGTTGATTTGCACAAACTGCTATTGGCATTGAACG
ACGCGGGTCTGACCTGGGAGGGCTTTTGCCAGGAGGTCGAGGTGCAGCAGGCAATGGTCCCCGAGCTGCCCGTTGGTTTC
GCGATGACCATCATCGAACGGCTCAAGCCGAAGGACCCGAATCTCTTCTTCGCACTGCCGAGCCGTGCAGAGCTGGCCCG
AGCCGATGACGATTCCCTGCTGCGGACCTTGTTGCCCCGCATTGACATCGTGCGGTACCGGATCGTGCGTGGCGTGTCCG
ATGAAGTTAAGCAGACCGTCCGCGACGCGATTGACGAGTTCGGTACGTCGATCCGTATGCAGGCGCTGACGGCTGCAGGG
CAGCTGACCGATCCGAACGATCCGCTGCCGTATCTGGTCTATGCCGGCGATGGCGAAGAACTCCGACTAAAGCTCGAATC
TGAAGGGCTCGTAATGTACGCGGGAGTCATGCCGCATTTGTTTCCAACCGAAGGCGTGGTCGAGAAACTGCCCAACATGT
GGTCTTACGCCTTCGGACATAGCCTGTTTCTGGATGTCGACTTCGCGGAAGGTGGTGCGCAATGA

Upstream 100 bases:

>100_bases
GCCAGTTGAATACCCGCAAGTAACCTCCCGGCTAGGTGAACTCCTGGAAAGCCGGACAACGCGTGCCGTCCTGAAGTGCT
TTCCGATATGGAGCTCATCA

Downstream 100 bases:

>100_bases
ATGGCACCATCGAGAACCTGCGGATATTCCTGGAAGAGCGCGACATCGGCGGCTTCCTCGCTGCCTACGAAACGATGGTG
CCGGGTGCCGACGTCCTTAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 554; Mature: 553

Protein sequence:

>554_residues
MTATVVASVDANPPSEQFQAVSLWTFVHLKTPRFTSEAALDVVRHLMPTADEDPKHLAKRLRKSLLEHGIALKHVNSLDA
AARLLGHADWHAANRAQPKTTLKLTPMADAAEELFEDWRQLAPRLCAWCDAWLRGKGGKVFEVRFGPGYVMVSIPTPKEG
GPAGSMDELPLLMVNPVGDAEHWLQEAPAAFETLRRHLEESGQAVLDGVAVLQLCNRNSREALDRLPSIPQPVRPTDAGN
SELVLLREDDELMPGSGYEIARGDELTCWAQLHLAMKDHKSEGITLDDGAWRIGGGRYVWQLSTIHPKDFVPGLVITMLS
ETDSEKLLRRYKLVQRVLSQNFKHHEVTKRLQYLSGPSDIYRVDLHKLLLALNDAGLTWEGFCQEVEVQQAMVPELPVGF
AMTIIERLKPKDPNLFFALPSRAELARADDDSLLRTLLPRIDIVRYRIVRGVSDEVKQTVRDAIDEFGTSIRMQALTAAG
QLTDPNDPLPYLVYAGDGEELRLKLESEGLVMYAGVMPHLFPTEGVVEKLPNMWSYAFGHSLFLDVDFAEGGAQ

Sequences:

>Translated_554_residues
MTATVVASVDANPPSEQFQAVSLWTFVHLKTPRFTSEAALDVVRHLMPTADEDPKHLAKRLRKSLLEHGIALKHVNSLDA
AARLLGHADWHAANRAQPKTTLKLTPMADAAEELFEDWRQLAPRLCAWCDAWLRGKGGKVFEVRFGPGYVMVSIPTPKEG
GPAGSMDELPLLMVNPVGDAEHWLQEAPAAFETLRRHLEESGQAVLDGVAVLQLCNRNSREALDRLPSIPQPVRPTDAGN
SELVLLREDDELMPGSGYEIARGDELTCWAQLHLAMKDHKSEGITLDDGAWRIGGGRYVWQLSTIHPKDFVPGLVITMLS
ETDSEKLLRRYKLVQRVLSQNFKHHEVTKRLQYLSGPSDIYRVDLHKLLLALNDAGLTWEGFCQEVEVQQAMVPELPVGF
AMTIIERLKPKDPNLFFALPSRAELARADDDSLLRTLLPRIDIVRYRIVRGVSDEVKQTVRDAIDEFGTSIRMQALTAAG
QLTDPNDPLPYLVYAGDGEELRLKLESEGLVMYAGVMPHLFPTEGVVEKLPNMWSYAFGHSLFLDVDFAEGGAQ
>Mature_553_residues
TATVVASVDANPPSEQFQAVSLWTFVHLKTPRFTSEAALDVVRHLMPTADEDPKHLAKRLRKSLLEHGIALKHVNSLDAA
ARLLGHADWHAANRAQPKTTLKLTPMADAAEELFEDWRQLAPRLCAWCDAWLRGKGGKVFEVRFGPGYVMVSIPTPKEGG
PAGSMDELPLLMVNPVGDAEHWLQEAPAAFETLRRHLEESGQAVLDGVAVLQLCNRNSREALDRLPSIPQPVRPTDAGNS
ELVLLREDDELMPGSGYEIARGDELTCWAQLHLAMKDHKSEGITLDDGAWRIGGGRYVWQLSTIHPKDFVPGLVITMLSE
TDSEKLLRRYKLVQRVLSQNFKHHEVTKRLQYLSGPSDIYRVDLHKLLLALNDAGLTWEGFCQEVEVQQAMVPELPVGFA
MTIIERLKPKDPNLFFALPSRAELARADDDSLLRTLLPRIDIVRYRIVRGVSDEVKQTVRDAIDEFGTSIRMQALTAAGQ
LTDPNDPLPYLVYAGDGEELRLKLESEGLVMYAGVMPHLFPTEGVVEKLPNMWSYAFGHSLFLDVDFAEGGAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61745; Mature: 61614

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATVVASVDANPPSEQFQAVSLWTFVHLKTPRFTSEAALDVVRHLMPTADEDPKHLAKR
CCEEEEEEECCCCCHHHHHHEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHH
LRKSLLEHGIALKHVNSLDAAARLLGHADWHAANRAQPKTTLKLTPMADAAEELFEDWRQ
HHHHHHHCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHH
LAPRLCAWCDAWLRGKGGKVFEVRFGPGYVMVSIPTPKEGGPAGSMDELPLLMVNPVGDA
HHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCH
EHWLQEAPAAFETLRRHLEESGQAVLDGVAVLQLCNRNSREALDRLPSIPQPVRPTDAGN
HHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCC
SELVLLREDDELMPGSGYEIARGDELTCWAQLHLAMKDHKSEGITLDDGAWRIGGGRYVW
CCEEEEECCCCCCCCCCCEECCCCCEEEHHHHHHHHHHCCCCCEEECCCCEEECCCEEEE
QLSTIHPKDFVPGLVITMLSETDSEKLLRRYKLVQRVLSQNFKHHEVTKRLQYLSGPSDI
EEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHH
YRVDLHKLLLALNDAGLTWEGFCQEVEVQQAMVPELPVGFAMTIIERLKPKDPNLFFALP
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEECC
SRAELARADDDSLLRTLLPRIDIVRYRIVRGVSDEVKQTVRDAIDEFGTSIRMQALTAAG
CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCC
QLTDPNDPLPYLVYAGDGEELRLKLESEGLVMYAGVMPHLFPTEGVVEKLPNMWSYAFGH
CCCCCCCCCCEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCHHHHHCCHHHHHHCCC
SLFLDVDFAEGGAQ
EEEEEEECCCCCCC
>Mature Secondary Structure 
TATVVASVDANPPSEQFQAVSLWTFVHLKTPRFTSEAALDVVRHLMPTADEDPKHLAKR
CEEEEEEECCCCCHHHHHHEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHH
LRKSLLEHGIALKHVNSLDAAARLLGHADWHAANRAQPKTTLKLTPMADAAEELFEDWRQ
HHHHHHHCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHH
LAPRLCAWCDAWLRGKGGKVFEVRFGPGYVMVSIPTPKEGGPAGSMDELPLLMVNPVGDA
HHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCH
EHWLQEAPAAFETLRRHLEESGQAVLDGVAVLQLCNRNSREALDRLPSIPQPVRPTDAGN
HHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCC
SELVLLREDDELMPGSGYEIARGDELTCWAQLHLAMKDHKSEGITLDDGAWRIGGGRYVW
CCEEEEECCCCCCCCCCCEECCCCCEEEHHHHHHHHHHCCCCCEEECCCCEEECCCEEEE
QLSTIHPKDFVPGLVITMLSETDSEKLLRRYKLVQRVLSQNFKHHEVTKRLQYLSGPSDI
EEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHH
YRVDLHKLLLALNDAGLTWEGFCQEVEVQQAMVPELPVGFAMTIIERLKPKDPNLFFALP
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEECC
SRAELARADDDSLLRTLLPRIDIVRYRIVRGVSDEVKQTVRDAIDEFGTSIRMQALTAAG
CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCC
QLTDPNDPLPYLVYAGDGEELRLKLESEGLVMYAGVMPHLFPTEGVVEKLPNMWSYAFGH
CCCCCCCCCCEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCHHHHHCCHHHHHHCCC
SLFLDVDFAEGGAQ
EEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA