Click here to switch to the map view.

The map label for this gene is yiaD [C]

Identifier: 71907808

GI number: 71907808

Start: 2360816

End: 2361601

Strand: Reverse

Name: yiaD [C]

Synonym: Daro_2186

Alternate gene names: 71907808

Gene position: 2361601-2360816 (Counterclockwise)

Preceding gene: 71907809

Following gene: 71907800

Centisome position: 52.47

GC content: 54.58

Gene sequence:

>786_bases
ATGAATATGAAAACCCCACTAATCGTTGCTGCATTGTGTCTCGCCTTCCAAGGGGCAGCTTTTGCCCAGTCAAAATCCCC
CGAAGAGCCAGGTAAGGTGATTGCATCTGGTACCGTTCCGGATGAGGCATCGCGTGCGGCGATCCTCGGCAAGCTTCGCG
ATCTTTATGGCGCGGGTAATGTGGTTGATCGCATGGAAGTTGGCGGGGTCGTTCCGCCAAGTAACTGGACCGAGAACATG
ACCAAGATCATCGGTCCCAATCTCAAGCAGGTTCATAAGGGCCAAATGCAGGTTAACGGTACCCAGATCGCGATCAAGGG
CAATGTGGCCAATGAGGCTTTGCGCCAACAGGTGGTCAGCAATCTGGCCACTTCGCTCAACCCAACCTATACCATCGATA
ACGGCCTGGTTGCAGCTGCTGGCGAGGCACAGAACGTGCTGGACAAGACGCTATCCAATCGTGTCGTTGAATTCGAGGTT
GGCGCAGCAACGCTGACGCCGGCTGGGCGTGTCATTCTTGATGAAATGTATGCCGCTATCAAGCAAATCGGCACCCCCAA
GGTTCAGGTGATCGGCCACACTGATAGTTCGGGAAGCCGACAAGCCAATATCGCACTCAGCTTGTCGCGGGCTAATTCGG
TCCGCTCTTACCTTATTGAAAAAGGTCTTCCGGCAGATGGTTTGACTGCAGTGGGCTCGGGGCCGGATCAACCGGTGGGT
TCGAACGATTCGTCAGAGGGGCGGGCGAAAAACCGACGCATAGAATTCAAACTGGCCGGTCAATAA

Upstream 100 bases:

>100_bases
TCAATGACTATGGGGTTGCCAAGCTTTCCTCATATCTCGCTCAGCCGAATATTTCCCTTGAGCATGCCATCAATACGTTC
AGAGAAGTTTTTCTAGGCGA

Downstream 100 bases:

>100_bases
CCAAATACAGGCGGTTGCCAGTCAGCAACCGCCTGATAAGACTGTTTTAGTTTGATTCCCCGGTGTTGGGATCGACGCCC
AGCAACTCTTCCATGCGCAG

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MNMKTPLIVAALCLAFQGAAFAQSKSPEEPGKVIASGTVPDEASRAAILGKLRDLYGAGNVVDRMEVGGVVPPSNWTENM
TKIIGPNLKQVHKGQMQVNGTQIAIKGNVANEALRQQVVSNLATSLNPTYTIDNGLVAAAGEAQNVLDKTLSNRVVEFEV
GAATLTPAGRVILDEMYAAIKQIGTPKVQVIGHTDSSGSRQANIALSLSRANSVRSYLIEKGLPADGLTAVGSGPDQPVG
SNDSSEGRAKNRRIEFKLAGQ

Sequences:

>Translated_261_residues
MNMKTPLIVAALCLAFQGAAFAQSKSPEEPGKVIASGTVPDEASRAAILGKLRDLYGAGNVVDRMEVGGVVPPSNWTENM
TKIIGPNLKQVHKGQMQVNGTQIAIKGNVANEALRQQVVSNLATSLNPTYTIDNGLVAAAGEAQNVLDKTLSNRVVEFEV
GAATLTPAGRVILDEMYAAIKQIGTPKVQVIGHTDSSGSRQANIALSLSRANSVRSYLIEKGLPADGLTAVGSGPDQPVG
SNDSSEGRAKNRRIEFKLAGQ
>Mature_261_residues
MNMKTPLIVAALCLAFQGAAFAQSKSPEEPGKVIASGTVPDEASRAAILGKLRDLYGAGNVVDRMEVGGVVPPSNWTENM
TKIIGPNLKQVHKGQMQVNGTQIAIKGNVANEALRQQVVSNLATSLNPTYTIDNGLVAAAGEAQNVLDKTLSNRVVEFEV
GAATLTPAGRVILDEMYAAIKQIGTPKVQVIGHTDSSGSRQANIALSLSRANSVRSYLIEKGLPADGLTAVGSGPDQPVG
SNDSSEGRAKNRRIEFKLAGQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=104, Percent_Identity=42.3076923076923, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1787191, Length=123, Percent_Identity=39.8373983739837, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 27314; Mature: 27314

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMKTPLIVAALCLAFQGAAFAQSKSPEEPGKVIASGTVPDEASRAAILGKLRDLYGAGN
CCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCC
VVDRMEVGGVVPPSNWTENMTKIIGPNLKQVHKGQMQVNGTQIAIKGNVANEALRQQVVS
HHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHCCCEEECCEEEEEECCHHHHHHHHHHHH
NLATSLNPTYTIDNGLVAAAGEAQNVLDKTLSNRVVEFEVGAATLTPAGRVILDEMYAAI
HHHHHCCCCEEECCCEEEECCCHHHHHHHHHHCCEEEEECCCEEECCCHHHHHHHHHHHH
KQIGTPKVQVIGHTDSSGSRQANIALSLSRANSVRSYLIEKGLPADGLTAVGSGPDQPVG
HHCCCCEEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCC
SNDSSEGRAKNRRIEFKLAGQ
CCCCCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MNMKTPLIVAALCLAFQGAAFAQSKSPEEPGKVIASGTVPDEASRAAILGKLRDLYGAGN
CCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCC
VVDRMEVGGVVPPSNWTENMTKIIGPNLKQVHKGQMQVNGTQIAIKGNVANEALRQQVVS
HHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHCCCEEECCEEEEEECCHHHHHHHHHHHH
NLATSLNPTYTIDNGLVAAAGEAQNVLDKTLSNRVVEFEVGAATLTPAGRVILDEMYAAI
HHHHHCCCCEEECCCEEEECCCHHHHHHHHHHCCEEEEECCCEEECCCHHHHHHHHHHHH
KQIGTPKVQVIGHTDSSGSRQANIALSLSRANSVRSYLIEKGLPADGLTAVGSGPDQPVG
HHCCCCEEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCC
SNDSSEGRAKNRRIEFKLAGQ
CCCCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]