| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is 71907791
Identifier: 71907791
GI number: 71907791
Start: 2339770
End: 2342571
Strand: Reverse
Name: 71907791
Synonym: Daro_2169
Alternate gene names: NA
Gene position: 2342571-2339770 (Counterclockwise)
Preceding gene: 71907792
Following gene: 71907790
Centisome position: 52.04
GC content: 63.35
Gene sequence:
>2802_bases ATGACCATGAACAGCTTCCTAGATCTGATTTCCGGCGGCGCCGCCTGGCGCCAGACCGACCGGCTACTGACGCTGACCAC GCCGGCCGGGCCGGATGCCTTGCTGGCCGAAACGGCCAGCATTGACGAAGCCCTCGGCCCGGTTGCAGAGCACGCCGGTT ATCGCATCCAATTAACGGTTCTGACGGCCAACGCCGAGCAATCCCTGACCGCCTTGCTCGGCCAGCCAGCCCGTCTGGAC CTGCAAACCAGTGCCTTGCGCACAGTGCGGCGGCCTTTCCACGGTCACATTACGCAAGTCACCCGTCTTGGTGCCAACGG CGGTTTCGCCCGTTACAAACTGATCATCGAACCCTGGCTCGCCTTCCTTGGCCACAATCAGGACAACTACCTGTTTCAGG ACAAGAGCGTCATCGAGATCATTGACGAACTGCTCGGCGACTGGAAGTCCCAAGGCAAGCTCGTTCCCGACTGGCGCTGG GTCCTGGCTGACACCGCCGCTTACCCCAAGCGCGGCATGACCGTGCAATACCGCGAAAGCGATCTCGCTTTCCTCAAGCG TCTGCTGGCCGAAGAGGGGTTGTTCTGCTGGTTCGAACACCAGGCTGAAGAAGGCGACACCCTGGGTAAGCACACCCTGA TCATCGCTGACCATAACGGTGCCTTCACCGATAACACGCAACCCCGCATCCGCTTCACCCAGGCCGGCGCAACGCTCTCC GAAGACAGTCTCGACCGCTGGCACGGCCTGCGCCAGCTCGACACCGTCGAAACCAACGCCAGCAGTTGGGATTACCGCAG CCTCTCGACCCGGCCGCAAGGCGCCCGCAGCAGTATCGACAGCGGCAGCCTACCCAAGACCGCTGCCTGGCACGACCCCG GCCAATACGCCTGGCAGAACAGCGCCCACGGCGAACGTATGCTCGGCAACCAACGCCAAGCTATCGATGCGCGAATGAAA CAATTCGACGGCCAAGGCACCGTCCGTAGCGCCGCCCCCGGCACCACCTTCAGGCTGGCCGACCACCCCGAACACGACCT CGACGCCCCGGAACAACGCAAGTTCCTGATCACCGCCGTCAGCCACCAAGCTCGTAATAATCTGGACGAAACCGTCAATG GCGAACAAGGCCGGGAGCAGGGCAGCGAACAAAGCGTCGACCTCTACCGCAACCAGATCACCGCCATCCGTGCCAGCATC CCCTGGCGCCCCTTGAGCTCGGACAGCCACGGCCGGAACATCCACCCGCGCCCGACCATCAACGGCACGCTGACCGCTGT CGTCGTCGGCAACGGCCAACCCACCCACACCGACCGTGACAGGCGCGTCCGCGTCCAGTTCCCCTGGCAACGTGGTGCCC AATCCGCCGGGCGCAGCGAACACCCCACCGGCGCGGACAACGGTCCGGCCAGCGACGCCCTTGGCGTCTGGCTCCGCGTC ATGACCCCCGTCGCCGGTGCCAACTGGGGCGGCCACATGACCCCGCGCCCCGGCCAGGAAGTCCTCGTCGCCTTCCAGAA CGGCAACATCGACCGCCCGATCATCATCGGCACCGTCTACAACGGCAGCGGCAACACCGACGCCCAAGGCAACCAGCAAG CCGGCAGCACCCTGCAAGCCAGTGCCAATGCCCCCGCCTTCTTCGCGGGCAAGGAAGCCGAAGCCCACACCCACAACGCC AGCCTCTCCGGCCTCAAAAGCCAGCAACTCAATGCCAGCAAAACCGGGCAGGGCGGCTACAACCAACTCGTCTTCGACGA CACCCCCGGCGAATCCCGCATCGAAGTCTCTACCACCGAATACCAGAGCATTCTCCAACTCGGCCACCTCAAACAACAAA GTGACAACGCCCGCCAAGCCGACCGTGGCCACGGCGCCGAACTGGCGACCCAGTCTGCCAGCGCCATACGCGCCGGCAAC GGCCTCCTGATCAGTGCCGATGCCCGCCCCAATGCCAGCAGCAGCCACCTCGACAGCCGCGAACCCATCGCCCAGACCCA GGACGCCCAAAGCCTGACGCAAAGCTTGGCGGAGGTCGCCGCCAAACAAAACGCCGCCCTCAAAGGCGACCCCCAAGCCG ACAAACTCCCGGCCAGCGAAGCCCTCAAACACGCCATCGACGTCATGAGCGCCACCGCGACTCAAGGCCAAACTCAAGCC GGCAGCGACACCATCAAAGCCACCCTCGGCGGCACCGGTACCGTCCCCGCCTGGTCAGAACCGCGCATTCAATACAGCGC CCCGGCCGGCATCGCCCAACTCACCCCGCAAAACCACATCCTCGCCGCCGGCAAACACCTCAGCATTGCCACCGGACAGG ACACCAACCTCATCGCCCAAGGCCACCACAGCCTCTCCGTCAAGGATGGCATTGCCCTCTTCACCGTCGGCAAAGCCAAG GGCAAAAACAAACCCAACACTGAAACTGGCATCCACCTCCACGCCGCCAGCGGAAGCGTCAGCCTGCAAAGCCAAAGCGG CAAAACCACCGGTGCTGCCGACAAGAAAGTGACGATCGCCAGCACCACCGGTAACCTCAACGCCAGTGCCAAACAACACA TCCTCGCTATGGCCCAAGGGGCTTACCTGAAGATCGAGGGCGGGAATATTAGCCTGCATGCACCGGGCAAGGTGGAACTG AAGGCGAGTCAAAAGAATTTGACGGGGCCCAAGAGTGCTTCAACAAACTTGCCGGCCTGGAACGTTGGCGAACTGAACTT GGCCAATTCTCCTGAGCGAAAAGCAACCTGCCTCCAGGCGGCAAGCCGTAGCGGCGCTGCATTCGTTCAACTGGATAAGT AA
Upstream 100 bases:
>100_bases AAATTCGTTTAACATATCGCGTTGGGCTCGATCCGGTTTTCGATGAGCTGCTCAAAAGTTCATCCTGCCGTTTATTTACA CCACACCAACCGTTGATTGC
Downstream 100 bases:
>100_bases CTATGGCGTGGCACTACGAATGCATCCCGGCCCAAACGCCGGATACGTTGGCGGCCTGGCTTTCAGAACCGGACCAAACT GACCGCTATGCGCTCATTGA
Product: Rhs element Vgr protein
Products: NA
Alternate protein names: Type VI Secretion System Vgr Family Protein; VGR-Related Protein; Rhs Element Vgr Family Protein; Vgr-Related Protein; VGR-Like Protein; Rhs-Family Protein; Rhs Element Vgr Family; VgrG Protein; VGR-Related Type VI Secretion System Protein; Vgr Related Protein; Rhs Element Vgr Related Protein; Rhs Element Vgr-Related Protein; Replication/Virulence Associated Protein; Conserved Hypothethical Protein; Rhs Element VGR-Related Protein; Type VI Secretion System VgrG Family Protein; Rhs Family Protein; Vgr Protein; VgrG Family T6SS G
Number of amino acids: Translated: 933; Mature: 932
Protein sequence:
>933_residues MTMNSFLDLISGGAAWRQTDRLLTLTTPAGPDALLAETASIDEALGPVAEHAGYRIQLTVLTANAEQSLTALLGQPARLD LQTSALRTVRRPFHGHITQVTRLGANGGFARYKLIIEPWLAFLGHNQDNYLFQDKSVIEIIDELLGDWKSQGKLVPDWRW VLADTAAYPKRGMTVQYRESDLAFLKRLLAEEGLFCWFEHQAEEGDTLGKHTLIIADHNGAFTDNTQPRIRFTQAGATLS EDSLDRWHGLRQLDTVETNASSWDYRSLSTRPQGARSSIDSGSLPKTAAWHDPGQYAWQNSAHGERMLGNQRQAIDARMK QFDGQGTVRSAAPGTTFRLADHPEHDLDAPEQRKFLITAVSHQARNNLDETVNGEQGREQGSEQSVDLYRNQITAIRASI PWRPLSSDSHGRNIHPRPTINGTLTAVVVGNGQPTHTDRDRRVRVQFPWQRGAQSAGRSEHPTGADNGPASDALGVWLRV MTPVAGANWGGHMTPRPGQEVLVAFQNGNIDRPIIIGTVYNGSGNTDAQGNQQAGSTLQASANAPAFFAGKEAEAHTHNA SLSGLKSQQLNASKTGQGGYNQLVFDDTPGESRIEVSTTEYQSILQLGHLKQQSDNARQADRGHGAELATQSASAIRAGN GLLISADARPNASSSHLDSREPIAQTQDAQSLTQSLAEVAAKQNAALKGDPQADKLPASEALKHAIDVMSATATQGQTQA GSDTIKATLGGTGTVPAWSEPRIQYSAPAGIAQLTPQNHILAAGKHLSIATGQDTNLIAQGHHSLSVKDGIALFTVGKAK GKNKPNTETGIHLHAASGSVSLQSQSGKTTGAADKKVTIASTTGNLNASAKQHILAMAQGAYLKIEGGNISLHAPGKVEL KASQKNLTGPKSASTNLPAWNVGELNLANSPERKATCLQAASRSGAAFVQLDK
Sequences:
>Translated_933_residues MTMNSFLDLISGGAAWRQTDRLLTLTTPAGPDALLAETASIDEALGPVAEHAGYRIQLTVLTANAEQSLTALLGQPARLD LQTSALRTVRRPFHGHITQVTRLGANGGFARYKLIIEPWLAFLGHNQDNYLFQDKSVIEIIDELLGDWKSQGKLVPDWRW VLADTAAYPKRGMTVQYRESDLAFLKRLLAEEGLFCWFEHQAEEGDTLGKHTLIIADHNGAFTDNTQPRIRFTQAGATLS EDSLDRWHGLRQLDTVETNASSWDYRSLSTRPQGARSSIDSGSLPKTAAWHDPGQYAWQNSAHGERMLGNQRQAIDARMK QFDGQGTVRSAAPGTTFRLADHPEHDLDAPEQRKFLITAVSHQARNNLDETVNGEQGREQGSEQSVDLYRNQITAIRASI PWRPLSSDSHGRNIHPRPTINGTLTAVVVGNGQPTHTDRDRRVRVQFPWQRGAQSAGRSEHPTGADNGPASDALGVWLRV MTPVAGANWGGHMTPRPGQEVLVAFQNGNIDRPIIIGTVYNGSGNTDAQGNQQAGSTLQASANAPAFFAGKEAEAHTHNA SLSGLKSQQLNASKTGQGGYNQLVFDDTPGESRIEVSTTEYQSILQLGHLKQQSDNARQADRGHGAELATQSASAIRAGN GLLISADARPNASSSHLDSREPIAQTQDAQSLTQSLAEVAAKQNAALKGDPQADKLPASEALKHAIDVMSATATQGQTQA GSDTIKATLGGTGTVPAWSEPRIQYSAPAGIAQLTPQNHILAAGKHLSIATGQDTNLIAQGHHSLSVKDGIALFTVGKAK GKNKPNTETGIHLHAASGSVSLQSQSGKTTGAADKKVTIASTTGNLNASAKQHILAMAQGAYLKIEGGNISLHAPGKVEL KASQKNLTGPKSASTNLPAWNVGELNLANSPERKATCLQAASRSGAAFVQLDK >Mature_932_residues TMNSFLDLISGGAAWRQTDRLLTLTTPAGPDALLAETASIDEALGPVAEHAGYRIQLTVLTANAEQSLTALLGQPARLDL QTSALRTVRRPFHGHITQVTRLGANGGFARYKLIIEPWLAFLGHNQDNYLFQDKSVIEIIDELLGDWKSQGKLVPDWRWV LADTAAYPKRGMTVQYRESDLAFLKRLLAEEGLFCWFEHQAEEGDTLGKHTLIIADHNGAFTDNTQPRIRFTQAGATLSE DSLDRWHGLRQLDTVETNASSWDYRSLSTRPQGARSSIDSGSLPKTAAWHDPGQYAWQNSAHGERMLGNQRQAIDARMKQ FDGQGTVRSAAPGTTFRLADHPEHDLDAPEQRKFLITAVSHQARNNLDETVNGEQGREQGSEQSVDLYRNQITAIRASIP WRPLSSDSHGRNIHPRPTINGTLTAVVVGNGQPTHTDRDRRVRVQFPWQRGAQSAGRSEHPTGADNGPASDALGVWLRVM TPVAGANWGGHMTPRPGQEVLVAFQNGNIDRPIIIGTVYNGSGNTDAQGNQQAGSTLQASANAPAFFAGKEAEAHTHNAS LSGLKSQQLNASKTGQGGYNQLVFDDTPGESRIEVSTTEYQSILQLGHLKQQSDNARQADRGHGAELATQSASAIRAGNG LLISADARPNASSSHLDSREPIAQTQDAQSLTQSLAEVAAKQNAALKGDPQADKLPASEALKHAIDVMSATATQGQTQAG SDTIKATLGGTGTVPAWSEPRIQYSAPAGIAQLTPQNHILAAGKHLSIATGQDTNLIAQGHHSLSVKDGIALFTVGKAKG KNKPNTETGIHLHAASGSVSLQSQSGKTTGAADKKVTIASTTGNLNASAKQHILAMAQGAYLKIEGGNISLHAPGKVELK ASQKNLTGPKSASTNLPAWNVGELNLANSPERKATCLQAASRSGAAFVQLDK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 99816; Mature: 99685
Theoretical pI: Translated: 7.60; Mature: 7.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMNSFLDLISGGAAWRQTDRLLTLTTPAGPDALLAETASIDEALGPVAEHAGYRIQLTV CCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEE LTANAEQSLTALLGQPARLDLQTSALRTVRRPFHGHITQVTRLGANGGFARYKLIIEPWL EECCCHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCHHHHHEECCCCCCEEEEEHHHHHH AFLGHNQDNYLFQDKSVIEIIDELLGDWKSQGKLVPDWRWVLADTAAYPKRGMTVQYRES HHHCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECCH DLAFLKRLLAEEGLFCWFEHQAEEGDTLGKHTLIIADHNGAFTDNTQPRIRFTQAGATLS HHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCC EDSLDRWHGLRQLDTVETNASSWDYRSLSTRPQGARSSIDSGSLPKTAAWHDPGQYAWQN CCHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC SAHGERMLGNQRQAIDARMKQFDGQGTVRSAAPGTTFRLADHPEHDLDAPEQRKFLITAV CCCCHHHHCCHHHHHHHHHHHCCCCCCEECCCCCCEEEECCCCCCCCCCCCCCEEEEEEH SHQARNNLDETVNGEQGREQGSEQSVDLYRNQITAIRASIPWRPLSSDSHGRNIHPRPTI HHHHHCCCHHHCCCCCHHHCCCCHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCC NGTLTAVVVGNGQPTHTDRDRRVRVQFPWQRGAQSAGRSEHPTGADNGPASDALGVWLRV CCEEEEEEEECCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH MTPVAGANWGGHMTPRPGQEVLVAFQNGNIDRPIIIGTVYNGSGNTDAQGNQQAGSTLQA HHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEE SANAPAFFAGKEAEAHTHNASLSGLKSQQLNASKTGQGGYNQLVFDDTPGESRIEVSTTE CCCCCEEEECCCCCCCCCCCHHCCCCHHCCCCCCCCCCCCCEEEEECCCCCCEEEEEHHH YQSILQLGHLKQQSDNARQADRGHGAELATQSASAIRAGNGLLISADARPNASSSHLDSR HHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHCHHHEECCCCEEEECCCCCCCCCCCCCCC EPIAQTQDAQSLTQSLAEVAAKQNAALKGDPQADKLPASEALKHAIDVMSATATQGQTQA CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC GSDTIKATLGGTGTVPAWSEPRIQYSAPAGIAQLTPQNHILAAGKHLSIATGQDTNLIAQ CCCEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEECCCEEEEECCCCCCEEEC GHHSLSVKDGIALFTVGKAKGKNKPNTETGIHLHAASGSVSLQSQSGKTTGAADKKVTIA CCCCEEECCCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCEEEEE STTGNLNASAKQHILAMAQGAYLKIEGGNISLHAPGKVELKASQKNLTGPKSASTNLPAW ECCCCCCCHHHHHHHHEECCCEEEEECCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCC NVGELNLANSPERKATCLQAASRSGAAFVQLDK CCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECC >Mature Secondary Structure TMNSFLDLISGGAAWRQTDRLLTLTTPAGPDALLAETASIDEALGPVAEHAGYRIQLTV CHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEE LTANAEQSLTALLGQPARLDLQTSALRTVRRPFHGHITQVTRLGANGGFARYKLIIEPWL EECCCHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCHHHHHEECCCCCCEEEEEHHHHHH AFLGHNQDNYLFQDKSVIEIIDELLGDWKSQGKLVPDWRWVLADTAAYPKRGMTVQYRES HHHCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECCH DLAFLKRLLAEEGLFCWFEHQAEEGDTLGKHTLIIADHNGAFTDNTQPRIRFTQAGATLS HHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCC EDSLDRWHGLRQLDTVETNASSWDYRSLSTRPQGARSSIDSGSLPKTAAWHDPGQYAWQN CCHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC SAHGERMLGNQRQAIDARMKQFDGQGTVRSAAPGTTFRLADHPEHDLDAPEQRKFLITAV CCCCHHHHCCHHHHHHHHHHHCCCCCCEECCCCCCEEEECCCCCCCCCCCCCCEEEEEEH SHQARNNLDETVNGEQGREQGSEQSVDLYRNQITAIRASIPWRPLSSDSHGRNIHPRPTI HHHHHCCCHHHCCCCCHHHCCCCHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCC NGTLTAVVVGNGQPTHTDRDRRVRVQFPWQRGAQSAGRSEHPTGADNGPASDALGVWLRV CCEEEEEEEECCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH MTPVAGANWGGHMTPRPGQEVLVAFQNGNIDRPIIIGTVYNGSGNTDAQGNQQAGSTLQA HHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEE SANAPAFFAGKEAEAHTHNASLSGLKSQQLNASKTGQGGYNQLVFDDTPGESRIEVSTTE CCCCCEEEECCCCCCCCCCCHHCCCCHHCCCCCCCCCCCCCEEEEECCCCCCEEEEEHHH YQSILQLGHLKQQSDNARQADRGHGAELATQSASAIRAGNGLLISADARPNASSSHLDSR HHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHCHHHEECCCCEEEECCCCCCCCCCCCCCC EPIAQTQDAQSLTQSLAEVAAKQNAALKGDPQADKLPASEALKHAIDVMSATATQGQTQA CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC GSDTIKATLGGTGTVPAWSEPRIQYSAPAGIAQLTPQNHILAAGKHLSIATGQDTNLIAQ CCCEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEECCCEEEEECCCCCCEEEC GHHSLSVKDGIALFTVGKAKGKNKPNTETGIHLHAASGSVSLQSQSGKTTGAADKKVTIA CCCCEEECCCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCEEEEE STTGNLNASAKQHILAMAQGAYLKIEGGNISLHAPGKVELKASQKNLTGPKSASTNLPAW ECCCCCCCHHHHHHHHEECCCEEEEECCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCC NVGELNLANSPERKATCLQAASRSGAAFVQLDK CCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA