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The map label for this gene is csd1 [H]

Identifier: 71907761

GI number: 71907761

Start: 2305171

End: 2305818

Strand: Reverse

Name: csd1 [H]

Synonym: Daro_2137

Alternate gene names: 71907761

Gene position: 2305818-2305171 (Counterclockwise)

Preceding gene: 71907762

Following gene: 71907756

Centisome position: 51.23

GC content: 64.04

Gene sequence:

>648_bases
TTGCCGAACTGCATTCGGCACGAGATCGCTGGCGTGCAGCGCAGCAGCGGAGTCTGGAATTCGCGGTGCGCGAATTTCCG
TCCCGCGAAGCGCTCAATCGGTCCGACCGGGATCGGCGTGGTCTACGGCAAGAAGGCGCTGCTGGAGCAGATGCCTCCCT
GGCAGGGGGGCGGCAACATGATTGCTGACGTCACCTTCGAGAAGACGTTGTTCCAGCCGGCACCGAACAAGTTCGAAGCT
GGTACTGGCAACATCGCCGACGCGGTAGGGCTGGGCGCTGCTTTGGATTACGTCGACCGCATCGGCATCGAGAACATTGC
CCGCTACGAGCACGACCTGCTGGTCTATGCGACGCGCGGCCTGTCCTTGATTCCTGGCGTGCGCCTGATCGGCACGGCGG
CGGACAAGGCGAGCGTGGCGTCCTTCGTGCTGGCCGGTTACACGACGGAGGAAGTGGGCCGGGCGTTGAACGAGGAAGGC
ATCGCGGTGCGCTCCGGTCACCACTGCGCCCAGCCGATTCTGCGTCGCTTCGGCGTCGAGGCGACCGTTCGTCCTTCACT
GGCGTTCTACAACACCTGTGAGGAAATCGACCGCATGCTGGCTGTGGTACGTCGTTTGGCCCGTGGCAAGGGCAAGGTTG
CGGCCTGA

Upstream 100 bases:

>100_bases
AGGCTTGTTCAACGAAGCCGGGCTGGCCGCATGAGACACCCCGTTGCCAACTCATCCCTGGCCTACGAGCAGGTGGGTGG
CTGGGGCGTCAAAGGGATCG

Downstream 100 bases:

>100_bases
TTCGGTCAGGCCACGACAAAAAAGGAGCCGGCGGTAACGTCGGCTCTTTTTTTACCTGCCGGTGCGGCGCTTGCGTTCGA
AGGTGATGGCGCGGTGCAGG

Product: putative cysteine desulfurase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MPNCIRHEIAGVQRSSGVWNSRCANFRPAKRSIGPTGIGVVYGKKALLEQMPPWQGGGNMIADVTFEKTLFQPAPNKFEA
GTGNIADAVGLGAALDYVDRIGIENIARYEHDLLVYATRGLSLIPGVRLIGTAADKASVASFVLAGYTTEEVGRALNEEG
IAVRSGHHCAQPILRRFGVEATVRPSLAFYNTCEEIDRMLAVVRRLARGKGKVAA

Sequences:

>Translated_215_residues
MPNCIRHEIAGVQRSSGVWNSRCANFRPAKRSIGPTGIGVVYGKKALLEQMPPWQGGGNMIADVTFEKTLFQPAPNKFEA
GTGNIADAVGLGAALDYVDRIGIENIARYEHDLLVYATRGLSLIPGVRLIGTAADKASVASFVLAGYTTEEVGRALNEEG
IAVRSGHHCAQPILRRFGVEATVRPSLAFYNTCEEIDRMLAVVRRLARGKGKVAA
>Mature_214_residues
PNCIRHEIAGVQRSSGVWNSRCANFRPAKRSIGPTGIGVVYGKKALLEQMPPWQGGGNMIADVTFEKTLFQPAPNKFEAG
TGNIADAVGLGAALDYVDRIGIENIARYEHDLLVYATRGLSLIPGVRLIGTAADKASVASFVLAGYTTEEVGRALNEEGI
AVRSGHHCAQPILRRFGVEATVRPSLAFYNTCEEIDRMLAVVRRLARGKGKVAA

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=179, Percent_Identity=48.0446927374302, Blast_Score=170, Evalue=6e-44,
Organism=Escherichia coli, GI1789175, Length=172, Percent_Identity=42.4418604651163, Blast_Score=135, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 23108; Mature: 22977

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNCIRHEIAGVQRSSGVWNSRCANFRPAKRSIGPTGIGVVYGKKALLEQMPPWQGGGNM
CCCHHHHHHHCCHHCCCCCHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCE
IADVTFEKTLFQPAPNKFEAGTGNIADAVGLGAALDYVDRIGIENIARYEHDLLVYATRG
EEEEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCEEEEEECC
LSLIPGVRLIGTAADKASVASFVLAGYTTEEVGRALNEEGIAVRSGHHCAQPILRRFGVE
CCCCCCHHEEECCCCHHHHHHHHHHCCCHHHHHHHHCCCCCEEECCCHHHHHHHHHHCCC
ATVRPSLAFYNTCEEIDRMLAVVRRLARGKGKVAA
CEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PNCIRHEIAGVQRSSGVWNSRCANFRPAKRSIGPTGIGVVYGKKALLEQMPPWQGGGNM
CCHHHHHHHCCHHCCCCCHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCE
IADVTFEKTLFQPAPNKFEAGTGNIADAVGLGAALDYVDRIGIENIARYEHDLLVYATRG
EEEEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCEEEEEECC
LSLIPGVRLIGTAADKASVASFVLAGYTTEEVGRALNEEGIAVRSGHHCAQPILRRFGVE
CCCCCCHHEEECCCCHHHHHHHHHHCCCHHHHHHHHCCCCCEEECCCHHHHHHHHHHCCC
ATVRPSLAFYNTCEEIDRMLAVVRRLARGKGKVAA
CEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]