| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is yfcA [C]
Identifier: 71907742
GI number: 71907742
Start: 2286137
End: 2286916
Strand: Reverse
Name: yfcA [C]
Synonym: Daro_2116
Alternate gene names: 71907742
Gene position: 2286916-2286137 (Counterclockwise)
Preceding gene: 71907743
Following gene: 71907736
Centisome position: 50.81
GC content: 60.0
Gene sequence:
>780_bases ATGACGCTGAATGAAGCCCTTCTCGTTGCCCTCGGCGCATTCCTGGCTGGAGGCATGAACGCTATCGCTGGTGGAGGTAC CTTTTTTTCCTTCCCGGCCATGCTCGCTGCGGGAGTGCCGCCCGTTACGGCCAATGCCAGCAATACGGTCGCTCTATGGC CAGCCAGCTTGTCCAGCGCCTGGGCGTATCGCAAGGAAGCCATGCGCCACGGGCGCTGGGCCATCTTGCTGATCGCCGTA TCCGTCATCGGCGGCCTCGCCGGCGGTTTGCTGCTGCTCTCTACTTCAAATGCTGCCTTTTCGGCACTGATCCCTTGGTT ACTTCTGGTCGCCACCAGCTTGTTTGCCTTCAGTGCCCGGGTCAGTCGGCTCGTCGCATGGGGCAAGCGGCGCTTCGGAG CAGAGTCAACCGGCGAGCCCGGTGGCGGTATTGGTGGGGCCTTGTTTCAACTTATCGTCGCCATTTACGGCGGATTCTTT GGTGCCGGCATGGGTATCCTGACTCTGGCTGCGCTATCCATTCAAGGTTATGAGGACATGCAGGAACTCAATGCCTTGAA GAATCTGACTTCCGCGGTGAACTACAGCATCGCAGCAGTGACCTTTCTGGTTGCCGGCGCAATCAGTTGGCCGCACACCC TAGTCGCCCTGGGTACAGCGACCATCGGTGGCATGGCTGGTGCAGCGGTTGCCAAGCGCATGCCGGCGATCTGGCTACGG CGACTGGTGATTGCCGTCGGCGCGACGTTGACCACCGTCTACTTCTTCAAAACCTACTGA
Upstream 100 bases:
>100_bases GACTAAGCGGCAGTCGCAGCGCGTACGGGAAAATCACACTATCGCACGGGCGGCAAATTGGACAGAATCACCAATAATTT TCTTGTGGTGACCCAATAAG
Downstream 100 bases:
>100_bases TCGATATCGCAGAGTAATAAGGCCCTAACTGGCCGGGTTAGGAGGTAGCAAAGGTCCCGAAGGACCAAGTGATGCCGAAT GTTCGCTTCCATACGCCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MTLNEALLVALGAFLAGGMNAIAGGGTFFSFPAMLAAGVPPVTANASNTVALWPASLSSAWAYRKEAMRHGRWAILLIAV SVIGGLAGGLLLLSTSNAAFSALIPWLLLVATSLFAFSARVSRLVAWGKRRFGAESTGEPGGGIGGALFQLIVAIYGGFF GAGMGILTLAALSIQGYEDMQELNALKNLTSAVNYSIAAVTFLVAGAISWPHTLVALGTATIGGMAGAAVAKRMPAIWLR RLVIAVGATLTTVYFFKTY
Sequences:
>Translated_259_residues MTLNEALLVALGAFLAGGMNAIAGGGTFFSFPAMLAAGVPPVTANASNTVALWPASLSSAWAYRKEAMRHGRWAILLIAV SVIGGLAGGLLLLSTSNAAFSALIPWLLLVATSLFAFSARVSRLVAWGKRRFGAESTGEPGGGIGGALFQLIVAIYGGFF GAGMGILTLAALSIQGYEDMQELNALKNLTSAVNYSIAAVTFLVAGAISWPHTLVALGTATIGGMAGAAVAKRMPAIWLR RLVIAVGATLTTVYFFKTY >Mature_258_residues TLNEALLVALGAFLAGGMNAIAGGGTFFSFPAMLAAGVPPVTANASNTVALWPASLSSAWAYRKEAMRHGRWAILLIAVS VIGGLAGGLLLLSTSNAAFSALIPWLLLVATSLFAFSARVSRLVAWGKRRFGAESTGEPGGGIGGALFQLIVAIYGGFFG AGMGILTLAALSIQGYEDMQELNALKNLTSAVNYSIAAVTFLVAGAISWPHTLVALGTATIGGMAGAAVAKRMPAIWLRR LVIAVGATLTTVYFFKTY
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0721 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002781 [H]
Pfam domain/function: PF01925 DUF81 [H]
EC number: NA
Molecular weight: Translated: 26660; Mature: 26528
Theoretical pI: Translated: 10.67; Mature: 10.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLNEALLVALGAFLAGGMNAIAGGGTFFSFPAMLAAGVPPVTANASNTVALWPASLSSA CCCHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHH WAYRKEAMRHGRWAILLIAVSVIGGLAGGLLLLSTSNAAFSALIPWLLLVATSLFAFSAR HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH VSRLVAWGKRRFGAESTGEPGGGIGGALFQLIVAIYGGFFGAGMGILTLAALSIQGYEDM HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH QELNALKNLTSAVNYSIAAVTFLVAGAISWPHTLVALGTATIGGMAGAAVAKRMPAIWLR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLVIAVGATLTTVYFFKTY HHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TLNEALLVALGAFLAGGMNAIAGGGTFFSFPAMLAAGVPPVTANASNTVALWPASLSSA CCHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHH WAYRKEAMRHGRWAILLIAVSVIGGLAGGLLLLSTSNAAFSALIPWLLLVATSLFAFSAR HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH VSRLVAWGKRRFGAESTGEPGGGIGGALFQLIVAIYGGFFGAGMGILTLAALSIQGYEDM HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH QELNALKNLTSAVNYSIAAVTFLVAGAISWPHTLVALGTATIGGMAGAAVAKRMPAIWLR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLVIAVGATLTTVYFFKTY HHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]