| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is selA [H]
Identifier: 71907443
GI number: 71907443
Start: 1949463
End: 1950860
Strand: Reverse
Name: selA [H]
Synonym: Daro_1814
Alternate gene names: 71907443
Gene position: 1950860-1949463 (Counterclockwise)
Preceding gene: 71907444
Following gene: 71907442
Centisome position: 43.34
GC content: 65.81
Gene sequence:
>1398_bases ATGAACGAAAAACGAAATCTACCCGCGGTTGACCGCGTTCTGGCCCAGCTAGCCGATCTCATTGAAGCGCATGGCCGCCA GCTGGTCACCGGCTGTGTCCGCGCCGAACTGGCTGCCGCCCGCGAAGGCCTGAAACATGGCCTGCCGCTGCCCGACGAAG GCGCACTGCTCGCCGCCATCCGCCGCCGGGCCAACGACGCCGGCCGTGCCAATCTGCGCCCCGTCTTCAACCTGACCGGC ACGGTGCTTCACACTAACCTCGGCCGTGCCCAATTGGCGGAAGAAGCCATTGCCGCCATGGTCGAAGCCGCCCGTTCACC CTGTGCGCTGGAATACGACCTGGCCTCCGGTGGCCGCGGTGATCGCGACGATCTGGTGTCCGGCCTGCTCGCCGAACTGA TTGCCGGCGGTTCGCCCGACATCGCCGCCACCATCGTCAACAACAACGCTGCCGCTGTATTGCTCACCCTGAACGCCCTC GCCCAAGGCAAGGAGGCCGTGGTATCGCGTGGCGAGCTGGTCGAGATCGGCGGCGCTTTCCGCATTCCCGACGTGATGCG CCGGGCGCAGGTCAAGCTGCACGAAATCGGCACTACCAACCGCACCCACGCCAAGGACTTTCAGGAAGCCATCAATCCCA AAACGGCCTTGCTGATGAAGATCCACACCAGTAACTACGCCGTCACCGGTTTCACGGCAGCTGTCGACGAAAAGGTGATT GCCGAAATCGCCCACGCCGCCAACCTGCCCTTCGTCATCGACCTCGGCAGCGGCACGCTGTGCGACTTCGCCGCCCATGG TCTGCCAGCCGAGCCGACGCCGCAACAGGCACTGGCCGCTGGTGCCGACATCGTCACCTTCTCCGGCGACAAGCTGCTCG GCGGCCCACAGGCCGGGCTGATCGTCGGCCGCAAGGATCTGGTCGCCAAGATCAAGAAAAACCCGCTGAAGCGCGCCCTG CGCGTCGGCAAGACGACACTGGCCGCGCTGGAAGCAACCCTGCGCCTCTATCGCGACCCGGATCGCCTGGCCGAACGCCT GCCGACGCTGCGCTTGCTGACCCGACCGGTGGCAGAAATCACCGCGCTGGCTGAACGGGTGCTGCCGGCAGCCCAAGCCG CCCTCGGCGAACTGGCCGCAGTCAGCATCCAGCCCTGCAGCAGCCAGATCGGCAGCGGCGCCCTGCCGGTCGAGCGGCTC CCATCGGCTGCCCTGGTCTGCCGACCCACCGCCAGGAAACCTGGCAAGGCCTTGCTCGCCATCGAGGCCGCCTTCCGCGG TTTGCCGACGCCGGTCATCGGCCACATCCGCGACGACGCGTATCATCTCGACTTGCGTTGCCTGGAAGCGAAAGACGAAG CCCGCTTCATGGCGCAATTGCAACAACTGAAGTTTTGA
Upstream 100 bases:
>100_bases ACGAAGCCGGCTACGAACGCTCCGGCCCCAACCTGTTGCTGATCGGCGCCAACGCTTAACTCCATTGATCAACCTTTCTG CCCGGTCCGGGTGAAAGCCT
Downstream 100 bases:
>100_bases AAGCAGCCTCGCTGGGCAGTCTGCGTACCGCCTGCTGTTTTCTTTCGTGCCTGAAAAGGCACCCCCGTAAATCCGGGCAT CTCCGTGTCCGGGTGGTTCA
Product: selenocysteine synthase
Products: NA
Alternate protein names: Selenocysteine synthase; Sec synthase; Selenocysteinyl-tRNA(Sec) synthase [H]
Number of amino acids: Translated: 465; Mature: 465
Protein sequence:
>465_residues MNEKRNLPAVDRVLAQLADLIEAHGRQLVTGCVRAELAAAREGLKHGLPLPDEGALLAAIRRRANDAGRANLRPVFNLTG TVLHTNLGRAQLAEEAIAAMVEAARSPCALEYDLASGGRGDRDDLVSGLLAELIAGGSPDIAATIVNNNAAAVLLTLNAL AQGKEAVVSRGELVEIGGAFRIPDVMRRAQVKLHEIGTTNRTHAKDFQEAINPKTALLMKIHTSNYAVTGFTAAVDEKVI AEIAHAANLPFVIDLGSGTLCDFAAHGLPAEPTPQQALAAGADIVTFSGDKLLGGPQAGLIVGRKDLVAKIKKNPLKRAL RVGKTTLAALEATLRLYRDPDRLAERLPTLRLLTRPVAEITALAERVLPAAQAALGELAAVSIQPCSSQIGSGALPVERL PSAALVCRPTARKPGKALLAIEAAFRGLPTPVIGHIRDDAYHLDLRCLEAKDEARFMAQLQQLKF
Sequences:
>Translated_465_residues MNEKRNLPAVDRVLAQLADLIEAHGRQLVTGCVRAELAAAREGLKHGLPLPDEGALLAAIRRRANDAGRANLRPVFNLTG TVLHTNLGRAQLAEEAIAAMVEAARSPCALEYDLASGGRGDRDDLVSGLLAELIAGGSPDIAATIVNNNAAAVLLTLNAL AQGKEAVVSRGELVEIGGAFRIPDVMRRAQVKLHEIGTTNRTHAKDFQEAINPKTALLMKIHTSNYAVTGFTAAVDEKVI AEIAHAANLPFVIDLGSGTLCDFAAHGLPAEPTPQQALAAGADIVTFSGDKLLGGPQAGLIVGRKDLVAKIKKNPLKRAL RVGKTTLAALEATLRLYRDPDRLAERLPTLRLLTRPVAEITALAERVLPAAQAALGELAAVSIQPCSSQIGSGALPVERL PSAALVCRPTARKPGKALLAIEAAFRGLPTPVIGHIRDDAYHLDLRCLEAKDEARFMAQLQQLKF >Mature_465_residues MNEKRNLPAVDRVLAQLADLIEAHGRQLVTGCVRAELAAAREGLKHGLPLPDEGALLAAIRRRANDAGRANLRPVFNLTG TVLHTNLGRAQLAEEAIAAMVEAARSPCALEYDLASGGRGDRDDLVSGLLAELIAGGSPDIAATIVNNNAAAVLLTLNAL AQGKEAVVSRGELVEIGGAFRIPDVMRRAQVKLHEIGTTNRTHAKDFQEAINPKTALLMKIHTSNYAVTGFTAAVDEKVI AEIAHAANLPFVIDLGSGTLCDFAAHGLPAEPTPQQALAAGADIVTFSGDKLLGGPQAGLIVGRKDLVAKIKKNPLKRAL RVGKTTLAALEATLRLYRDPDRLAERLPTLRLLTRPVAEITALAERVLPAAQAALGELAAVSIQPCSSQIGSGALPVERL PSAALVCRPTARKPGKALLAIEAAFRGLPTPVIGHIRDDAYHLDLRCLEAKDEARFMAQLQQLKF
Specific function: Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis [H]
COG id: COG1921
COG function: function code E; Selenocysteine synthase [seryl-tRNASer selenium transferase]
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the selA family [H]
Homologues:
Organism=Escherichia coli, GI2367248, Length=458, Percent_Identity=54.3668122270742, Blast_Score=426, Evalue=1e-120,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR018319 - InterPro: IPR004534 [H]
Pfam domain/function: PF03841 SelA [H]
EC number: =2.9.1.1 [H]
Molecular weight: Translated: 49174; Mature: 49174
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEKRNLPAVDRVLAQLADLIEAHGRQLVTGCVRAELAAAREGLKHGLPLPDEGALLAAI CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH RRRANDAGRANLRPVFNLTGTVLHTNLGRAQLAEEAIAAMVEAARSPCALEYDLASGGRG HHHCCCCCCCCCCCHHCCCCHHEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC DRDDLVSGLLAELIAGGSPDIAATIVNNNAAAVLLTLNALAQGKEAVVSRGELVEIGGAF CHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEHHHHHCCHHHHHCCCCEEEECCCC RIPDVMRRAQVKLHEIGTTNRTHAKDFQEAINPKTALLMKIHTSNYAVTGFTAAVDEKVI CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEEECCCEEEEEHHHHHHHHHH AEIAHAANLPFVIDLGSGTLCDFAAHGLPAEPTPQQALAAGADIVTFSGDKLLGGPQAGL HHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCE IVGRKDLVAKIKKNPLKRALRVGKTTLAALEATLRLYRDPDRLAERLPTLRLLTRPVAEI EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHH TALAERVLPAAQAALGELAAVSIQPCSSQIGSGALPVERLPSAALVCRPTARKPGKALLA HHHHHHHHHHHHHHHHHHHHEEECCHHHHCCCCCCCHHHCCCCEEEECCCCCCCCCEEEE IEAAFRGLPTPVIGHIRDDAYHLDLRCLEAKDEARFMAQLQQLKF HHHHHCCCCCCHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHCC >Mature Secondary Structure MNEKRNLPAVDRVLAQLADLIEAHGRQLVTGCVRAELAAAREGLKHGLPLPDEGALLAAI CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH RRRANDAGRANLRPVFNLTGTVLHTNLGRAQLAEEAIAAMVEAARSPCALEYDLASGGRG HHHCCCCCCCCCCCHHCCCCHHEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC DRDDLVSGLLAELIAGGSPDIAATIVNNNAAAVLLTLNALAQGKEAVVSRGELVEIGGAF CHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEHHHHHCCHHHHHCCCCEEEECCCC RIPDVMRRAQVKLHEIGTTNRTHAKDFQEAINPKTALLMKIHTSNYAVTGFTAAVDEKVI CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEEECCCEEEEEHHHHHHHHHH AEIAHAANLPFVIDLGSGTLCDFAAHGLPAEPTPQQALAAGADIVTFSGDKLLGGPQAGL HHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCE IVGRKDLVAKIKKNPLKRALRVGKTTLAALEATLRLYRDPDRLAERLPTLRLLTRPVAEI EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHH TALAERVLPAAQAALGELAAVSIQPCSSQIGSGALPVERLPSAALVCRPTARKPGKALLA HHHHHHHHHHHHHHHHHHHHEEECCHHHHCCCCCCCHHHCCCCEEEECCCCCCCCCEEEE IEAAFRGLPTPVIGHIRDDAYHLDLRCLEAKDEARFMAQLQQLKF HHHHHCCCCCCHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA